Clone BO09138 Report

Search the DGRC for BO09138

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG6506-RA
Protein status:BO09138.pep: validated full length
Sequenced Size:1111

Clone Sequence Records

BO09138.3prime Sequence

727 bp (709 high quality bases) assembled on 2006-01-11

> BO09138.3prime
ATGGTCTAGAAAGCTTGCCGTTTCAAAAGTGGCGTGAAAGTTGCTAATCG
TGGCCCCATTGCCATTTCCATTGCCGCCCGTGCTGCCATTGCCGCTCGTC
CCCGTCATGTTGGAGGTATTGGACGATATCTGGCCATCGAGCAGGCCGTA
CAGCATCTGCTGGGAGCTGACTGTGCCACTGGAGCCCGTGCTACCGCCCA
GATCCTGCAGCATATCGCCCATGGCCATGCCGCCTATGCTCTGGCTGCTG
CCTGTGGCGCTGTTGTCCAGGATGTTGAGAAAGTCGTGGCCGTTGAACTC
GTTGTGCTGCTTCTGCATGCTGCTCTGGCTCTCCTTCATCAGTTTGTCGT
ACTCCTGCAGTACGCTGTTGAACTCAGCGATCTCCGCGCGATTCCTGGCC
AGCACCTTGTGCTTGTAGTAGTTGTGCACCTGGGTGAGCGAGGTGCCCGT
TTGGGCGAAATGGGCGCGCTCCAGTGGGACCAGCTGCAGCACCGTGGAAT
TCTGCAGCCGCGGCTGACTGTCATAGTAACCGCGATACTCGCCGATAAAG
CTGCGCAGGAACTCCTCGGTGGCGTCCGTCAGCAGTTGCACCGCCGACTC
GGAACAGTCGGTGAAGCCGGCCAGGCGCAGCATGCCGCACATCACCTTGC
GCATCGCCTGGCGGCAAGCAGAGCTGGGGATCTCCGGATATGCCTCCGGA
TCCCCGCGAGAGTAGGCTGTGTCCACG

BO09138.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 1080 CG6506-RA 369..1077 727..19 3520 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 450..1158 727..19 3530 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17851030..17851738 727..19 3530 99.9 Minus
Blast to na_te.dros performed on 2015-02-03 09:06:57 has no hits.

BO09138.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:57 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 369..1080 15..727 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:43 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 369..1080 15..727 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:44:13 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 450..1163 11..727 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:58:26 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 450..1163 11..727 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:58:26 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
X 17851030..17851743 11..727 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:44:13 Download gff for BO09138.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17745063..17745776 11..727 99   Minus

BO09138.5prime Sequence

812 bp (653 high quality bases) assembled on 2006-01-10

> BO09138.5prime
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACCAACTGATGAAGGAGAGCCAGATCAGCATGCACA
AGCAGCACAACG

BO09138.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 1080 CG6506-RA 1..796 17..812 3905 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:53:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 80..877 15..812 3945 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:52:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17850908..17851457 263..812 2705 99.5 Plus
X 23542271 X 17850539..17850683 15..159 725 100 Plus
X 23542271 X 17850745..17850855 160..270 540 99.1 Plus
Blast to na_te.dros performed on 2015-02-09 09:52:59 has no hits.

BO09138.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:58 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 1..796 17..812 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:45 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-PA 1..796 17..812 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:16 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 80..877 15..812 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:30 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 80..877 15..812 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:30 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
X 17850539..17850683 15..159 100 -> Plus
X 17850745..17850851 160..267 98 -> Plus
X 17850913..17851457 268..812 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:16 Download gff for BO09138.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17744572..17744716 15..159 100 -> Plus
arm_X 17744778..17744884 160..267 98 -> Plus
arm_X 17744946..17745490 268..812 99   Plus

BO09138.complete Sequence

1111 bp (1111 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631408

> BO09138.complete
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACAAACTGATGAAGGAGAGCCAGAGCAGCATGCAGA
AGCAGCACAACGAGTTCAACGGCCACGACTTTCTCAACATCCTGGACAAC
AGCGCCACAGGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGGCGATAT
GCTGCAGGATCTGGGCGGTAGCACGGGCTCCAGTGGCACAGTCAGCTCCC
AGCAGATGCTGTACGGCCTGCTCGATGGCCAGATATCGTCCAATACCTCC
AACATGACGGGGACGAGCGGCAATGGCAGCACGGGCGGCAATGGAAATGG
CAATGGGGCCACGATTAGCAACTTTCACGCCACTTTTGAAACGGCAAGCT
TTCTAGACCAT

BO09138.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1080 CG6506-PA 1..1077 17..1093 5385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-RA 1309 CG6506-RA 80..1158 15..1093 5395 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17850908..17851738 263..1093 4155 100 Plus
X 23542271 X 17850539..17850683 15..159 725 100 Plus
X 23542271 X 17850745..17850855 160..270 540 99.1 Plus
Blast to na_te.dros performed on 2014-11-27 14:48:20 has no hits.

BO09138.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:18 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 1..1080 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:01 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 56..1139 15..1101 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:11 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 82..1158 17..1095 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:18 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 56..1139 15..1101 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:58 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
CG6506-RA 82..1158 17..1095 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:58 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
X 17850541..17850683 17..159 100 -> Plus
X 17850745..17850851 160..267 98 -> Plus
X 17850913..17851738 268..1095 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:11 Download gff for BO09138.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17744574..17744716 17..159 100 -> Plus
arm_X 17744778..17744884 160..267 98 -> Plus
arm_X 17744946..17745771 268..1095 99   Plus

BO09138.pep Sequence

Translation from 16 to 1111

> BO09138.pep
MQTEHWGSLPAEDDGGQLTPDKYVPTAAKKLKLDEIRQRGDPQPQEKHHK
LELRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDF
PPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSACRQAMRK
VMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDSQPRLQNS
TVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFNSVLQEYD
KLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMGDMLQDLG
GSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNGNGNGATI
SNFHATFETASFLDH

BO09138.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6506-PA 359 CG6506-PA 1..359 1..359 1869 100 Plus