Clone Sequence Records
BO09138.3prime Sequence
727 bp (709 high quality bases) assembled on 2006-01-11
> BO09138.3prime
ATGGTCTAGAAAGCTTGCCGTTTCAAAAGTGGCGTGAAAGTTGCTAATCG
TGGCCCCATTGCCATTTCCATTGCCGCCCGTGCTGCCATTGCCGCTCGTC
CCCGTCATGTTGGAGGTATTGGACGATATCTGGCCATCGAGCAGGCCGTA
CAGCATCTGCTGGGAGCTGACTGTGCCACTGGAGCCCGTGCTACCGCCCA
GATCCTGCAGCATATCGCCCATGGCCATGCCGCCTATGCTCTGGCTGCTG
CCTGTGGCGCTGTTGTCCAGGATGTTGAGAAAGTCGTGGCCGTTGAACTC
GTTGTGCTGCTTCTGCATGCTGCTCTGGCTCTCCTTCATCAGTTTGTCGT
ACTCCTGCAGTACGCTGTTGAACTCAGCGATCTCCGCGCGATTCCTGGCC
AGCACCTTGTGCTTGTAGTAGTTGTGCACCTGGGTGAGCGAGGTGCCCGT
TTGGGCGAAATGGGCGCGCTCCAGTGGGACCAGCTGCAGCACCGTGGAAT
TCTGCAGCCGCGGCTGACTGTCATAGTAACCGCGATACTCGCCGATAAAG
CTGCGCAGGAACTCCTCGGTGGCGTCCGTCAGCAGTTGCACCGCCGACTC
GGAACAGTCGGTGAAGCCGGCCAGGCGCAGCATGCCGCACATCACCTTGC
GCATCGCCTGGCGGCAAGCAGAGCTGGGGATCTCCGGATATGCCTCCGGA
TCCCCGCGAGAGTAGGCTGTGTCCACG
BO09138.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 1080 | CG6506-RA | 369..1077 | 727..19 | 3520 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 450..1158 | 727..19 | 3530 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17851030..17851738 | 727..19 | 3530 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:06:57 has no hits.
BO09138.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:57 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 369..1080 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:43 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 369..1080 | 15..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:44:13 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 450..1163 | 11..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:58:26 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 450..1163 | 11..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:58:26 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17851030..17851743 | 11..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:44:13 Download gff for
BO09138.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17745063..17745776 | 11..727 | 99 | | Minus |
BO09138.5prime Sequence
812 bp (653 high quality bases) assembled on 2006-01-10
> BO09138.5prime
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACCAACTGATGAAGGAGAGCCAGATCAGCATGCACA
AGCAGCACAACG
BO09138.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 1080 | CG6506-RA | 1..796 | 17..812 | 3905 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:53:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 80..877 | 15..812 | 3945 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:52:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17850908..17851457 | 263..812 | 2705 | 99.5 | Plus |
X | 23542271 | X | 17850539..17850683 | 15..159 | 725 | 100 | Plus |
X | 23542271 | X | 17850745..17850855 | 160..270 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:52:59 has no hits.
BO09138.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:58 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:45 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-PA | 1..796 | 17..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:16 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 80..877 | 15..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:30 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 80..877 | 15..812 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:30 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17850539..17850683 | 15..159 | 100 | -> | Plus |
X | 17850745..17850851 | 160..267 | 98 | -> | Plus |
X | 17850913..17851457 | 268..812 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:16 Download gff for
BO09138.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17744572..17744716 | 15..159 | 100 | -> | Plus |
arm_X | 17744778..17744884 | 160..267 | 98 | -> | Plus |
arm_X | 17744946..17745490 | 268..812 | 99 | | Plus |
BO09138.complete Sequence
1111 bp (1111 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631408
> BO09138.complete
GAAGTTATCAGTCGACATGCAAACAGAGCACTGGGGCTCGCTGCCCGCAG
AGGATGACGGCGGTCAACTGACGCCGGACAAATACGTGCCCACGGCGGCC
AAGAAACTTAAGCTGGACGAGATTCGCCAGCGCGGAGATCCGCAACCGCA
AGAAAAGCACCACAAGTTGGAGCTGAGGAGTGCGCTGGTCACCCAGACCA
TCGAGGTGATGAAGCAAACCGAGGTGCTGCAGTCCCTCATTGAAACGTAC
TCCAACAAAAATGGAAGTTCCAATTACCTCTTGAATCCGTGCCTAATGAT
ACCGGAAGTGGACTTTCCGCCGGAGAACGCAGCCGAACTGGTGGGCAGCC
AAAAGTTTCAGAAGCCCATTTGGTTCACACCAACCGTGGACACAGCCTAC
TCTCGCGGGGATCCGGAGGCATATCCGGAGATCCCCAGCTCTGCTTGCCG
CCAGGCGATGCGCAAGGTGATGTGCGGCATGCTGCGCCTGGCCGGCTTCA
CCGACTGTTCCGAGTCGGCGGTGCAACTGCTGACGGACGCCACCGAGGAG
TTCCTGCGCAGCTTTATCGGCGAGTATCGCGGCTACTATGACAGTCAGCC
GCGGCTGCAGAATTCCACGGTGCTGCAGCTGGTCCCACTGGAGCGCGCCC
ATTTCGCCCAAACGGGCACCTCGCTCACCCAGGTGCACAACTACTACAAG
CACAAGGTGCTGGCCAGGAATCGCGCGGAGATCGCTGAGTTCAACAGCGT
ACTGCAGGAGTACGACAAACTGATGAAGGAGAGCCAGAGCAGCATGCAGA
AGCAGCACAACGAGTTCAACGGCCACGACTTTCTCAACATCCTGGACAAC
AGCGCCACAGGCAGCAGCCAGAGCATAGGCGGCATGGCCATGGGCGATAT
GCTGCAGGATCTGGGCGGTAGCACGGGCTCCAGTGGCACAGTCAGCTCCC
AGCAGATGCTGTACGGCCTGCTCGATGGCCAGATATCGTCCAATACCTCC
AACATGACGGGGACGAGCGGCAATGGCAGCACGGGCGGCAATGGAAATGG
CAATGGGGCCACGATTAGCAACTTTCACGCCACTTTTGAAACGGCAAGCT
TTCTAGACCAT
BO09138.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:48:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1080 | CG6506-PA | 1..1077 | 17..1093 | 5385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-RA | 1309 | CG6506-RA | 80..1158 | 15..1093 | 5395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 17850908..17851738 | 263..1093 | 4155 | 100 | Plus |
X | 23542271 | X | 17850539..17850683 | 15..159 | 725 | 100 | Plus |
X | 23542271 | X | 17850745..17850855 | 160..270 | 540 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:48:20 has no hits.
BO09138.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:18 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 1..1080 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:01 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 56..1139 | 15..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:11 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 82..1158 | 17..1095 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:18 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 56..1139 | 15..1101 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:58 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6506-RA | 82..1158 | 17..1095 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:58 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 17850541..17850683 | 17..159 | 100 | -> | Plus |
X | 17850745..17850851 | 160..267 | 98 | -> | Plus |
X | 17850913..17851738 | 268..1095 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:11 Download gff for
BO09138.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17744574..17744716 | 17..159 | 100 | -> | Plus |
arm_X | 17744778..17744884 | 160..267 | 98 | -> | Plus |
arm_X | 17744946..17745771 | 268..1095 | 99 | | Plus |
BO09138.pep Sequence
Translation from 16 to 1111
> BO09138.pep
MQTEHWGSLPAEDDGGQLTPDKYVPTAAKKLKLDEIRQRGDPQPQEKHHK
LELRSALVTQTIEVMKQTEVLQSLIETYSNKNGSSNYLLNPCLMIPEVDF
PPENAAELVGSQKFQKPIWFTPTVDTAYSRGDPEAYPEIPSSACRQAMRK
VMCGMLRLAGFTDCSESAVQLLTDATEEFLRSFIGEYRGYYDSQPRLQNS
TVLQLVPLERAHFAQTGTSLTQVHNYYKHKVLARNRAEIAEFNSVLQEYD
KLMKESQSSMQKQHNEFNGHDFLNILDNSATGSSQSIGGMAMGDMLQDLG
GSTGSSGTVSSQQMLYGLLDGQISSNTSNMTGTSGNGSTGGNGNGNGATI
SNFHATFETASFLDH
BO09138.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6506-PA | 359 | CG6506-PA | 1..359 | 1..359 | 1869 | 100 | Plus |