Clone Sequence Records
BO09139.3prime Sequence
879 bp (785 high quality bases) assembled on 2006-01-11
> BO09139.3prime
ATGGTCTAGAAAGCTTGCACCACGCCAGGTTAGAAGGCTCCATCCACGAC
TGGGTTTCTTGGTGCTCGAGGGCTCTGGCTGCTGCTGCTGCTGATCCTGT
TCCTTCTGTTGTTGCTGCTGCTGCTGATCCTGCCTCTGTTGATTCTGCTC
TATATAGGTGCGTAGTATGGTATGCTTGTGTACGGACTTCTCGAACTCGG
CCGCACTTGGCCGATACGCCTCGAGCTTGTGCTTATAGCGGCCTGCCGAC
TGCGATGGGTCCGTGGTGTAGGCGTGGCTGCCGCCCCTCGAGGCGCTGCC
AAACGAACTGCCGCCGAAGGTCGACGCTGATGGTACCGCTGCCTGTGGGT
TGAATGGGGAGGGATTTGGATTGATGGTTTGGACGGGCTTGGGTCTTGGT
TGGTTATAGCTGAACTGGCTCTTGTTAATGTTGTTAGTCGGCGGATTGTT
ATTGGCGGTTTGACTGGAAGGGCTGCTGTTGTAGCCGTACTCATACGTTT
CAATTGTGTTTGCTCCGTAAACGCTGTTGGCCGCTGGCGAGGATCCGGGA
GCGGCGCAGAGTCCTTGGTAGCGGGACGAAGGCTTCATGCCGTATGTGGA
GCACGATGGCTTTCCAACCTCATAGGGATTGTAGCCCACCACATTGCCAC
CAGGCCCATAATTGCAGACGTAGAGCTTGTTGTACTTGCTGGTATCCTTG
TACTCCGCATATCCACAGCCCACCAAGCTGGTCTCACCCCAAACCAGTTG
GGAATAGTGTCCAGTTTTGGGGGACCAGGCGTCCCCGAAGGAGTACTTCT
GCACCTCGTTAAACCAACTCTGGATGCGAGAGGGGAAATCACCGTCATCG
GCATCCAAAGGCGCCGTACTCCAGATGAT
BO09139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-PA | 1179 | CG8483-RA | 316..1176 | 879..19 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-RA | 1869 | CG8483-RA | 603..1463 | 879..19 | 4305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13209160..13209791 | 19..650 | 3160 | 100 | Plus |
3R | 32079331 | 3R | 13210071..13210300 | 650..879 | 1150 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 09:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 1079..1141 | 346..408 | 108 | 63.5 | Plus |
BO09139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:59 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-PA | 316..1179 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:46 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-PA | 316..1179 | 16..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:44:11 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 603..1471 | 10..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:58:24 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 603..1471 | 10..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:58:24 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13209152..13209790 | 10..649 | 99 | <- | Plus |
3R | 13210071..13210300 | 650..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:44:11 Download gff for
BO09139.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9034874..9035512 | 10..649 | 99 | <- | Plus |
arm_3R | 9035793..9036022 | 650..879 | 100 | | Plus |
BO09139.5prime Sequence
851 bp (841 high quality bases) assembled on 2006-01-10
> BO09139.5prime
GAAGTTATCAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAA
TTATGATCATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATT
GCATCGGGCATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAA
TCGCCTCCGGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTG
CCGAGAATATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCT
CAGAAATGGGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAAT
AAATCGCTTTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGC
CTTTGGATGCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTT
AACGAGGTGCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGG
ACACTATTCCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGAT
ATGCGGAGTACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAAT
TATGGGCCTGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAA
GCCATCGTGCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGAC
TCTGCGCCGCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCA
AACACAATTGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCA
AACCGCCAATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCA
GCTATAACCAACCAAGACCCAAGCCCGTCCAAACCATCAATCCCAATCCC
T
BO09139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-PA | 1179 | CG8483-RA | 1..835 | 17..851 | 4150 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-RA | 1869 | CG8483-RA | 288..1122 | 17..851 | 4160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:52:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13209501..13209791 | 851..561 | 1440 | 99.7 | Minus |
3R | 32079331 | 3R | 13210071..13210329 | 561..303 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 13210897..13211098 | 302..101 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 13214094..13214178 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 09:52:49 has no hits.
BO09139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:00 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:47 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:13 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1122 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:29 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1122 | 17..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:29 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13209501..13209790 | 562..851 | 99 | <- | Minus |
3R | 13210071..13210329 | 303..561 | 100 | <- | Minus |
3R | 13210897..13211097 | 102..302 | 100 | <- | Minus |
3R | 13214094..13214182 | 11..101 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:13 Download gff for
BO09139.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9035223..9035512 | 562..851 | 99 | <- | Minus |
arm_3R | 9035793..9036051 | 303..561 | 100 | <- | Minus |
arm_3R | 9036619..9036819 | 102..302 | 100 | <- | Minus |
arm_3R | 9039816..9039904 | 11..101 | 95 | <- | Minus |
BO09139.complete Sequence
1210 bp (1210 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631409
> BO09139.complete
GAAGTTATCAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAA
TTATGATCATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATT
GCATCGGGCATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAA
TCGCCTCCGGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTG
CCGAGAATATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCT
CAGAAATGGGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAAT
AAATCGCTTTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGC
CTTTGGATGCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTT
AACGAGGTGCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGG
ACACTATTCCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGAT
ATGCGGAGTACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAAT
TATGGGCCTGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAA
GCCATCGTGCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGAC
TCTGCGCCGCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCA
AACACAATTGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCA
AACCGCCAATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCA
GCTATAACCAACCAAGACCCAAGCCCGTCCAAACCATCAATCCAAATCCC
TCCCCATTCAACCCACAGGCAGCGGTACCATCAGCGTCGACCTTCGGCGG
CAGTTCGTTTGGCAGCGCCTCGAGGGGCGGCAGCCACGCCTACACCACGG
ACCCATCGCAGTCGGCAGGCCGCTATAAGCACAAGCTCGAGGCGTATCGG
CCAAGTGCGGCCGAGTTCGAGAAGTCCGTACACAAGCATACCATACTACG
CACCTATATAGAGCAGAATCAACAGAGGCAGGATCAGCAGCAGCAGCAAC
AACAGAAGGAACAGGATCAGCAGCAGCAGCAGCCAGAGCCCTCGAGCACC
AAGAAACCCAGTCGTGGATGGAGCCTTCTAACCTGGCGTGGTGCAAGCTT
TCTAGACCAT
BO09139.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-RA | 1179 | CG8483-PA | 1..1176 | 17..1192 | 5880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-RA | 1869 | CG8483-RA | 288..1463 | 17..1192 | 5880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13209160..13209791 | 1192..561 | 3160 | 100 | Minus |
3R | 32079331 | 3R | 13210071..13210329 | 561..303 | 1295 | 100 | Minus |
3R | 32079331 | 3R | 13210897..13211098 | 302..101 | 1010 | 100 | Minus |
3R | 32079331 | 3R | 13214094..13214178 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:56:16 has no hits.
BO09139.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:19 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 1..1179 | 17..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:03 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1471 | 17..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:04 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1463 | 17..1194 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:19 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1471 | 17..1201 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:34 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8483-RA | 288..1463 | 17..1194 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:34 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13209157..13209790 | 562..1194 | 99 | <- | Minus |
3R | 13210071..13210329 | 303..561 | 100 | <- | Minus |
3R | 13210897..13211097 | 102..302 | 100 | <- | Minus |
3R | 13214094..13214178 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:04 Download gff for
BO09139.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9034879..9035512 | 562..1194 | 99 | <- | Minus |
arm_3R | 9035793..9036051 | 303..561 | 100 | <- | Minus |
arm_3R | 9036619..9036819 | 102..302 | 100 | <- | Minus |
arm_3R | 9039816..9039900 | 17..101 | 100 | | Minus |
BO09139.pep Sequence
Translation from 16 to 1210
> BO09139.pep
MMQPSAVLLTTIMIISCEVAFACNGKIIASGITAEERSIILQEHNRLRQI
VATGRYPGQPGAENMREIVWDDELAARAQKWADNCQFRHDPHRTINRFTM
GQNLAIIWSTAPLDADDGDFPSRIQSWFNEVQKYSFGDAWSPKTGHYSQL
VWGETSLVGCGYAEYKDTSKYNKLYVCNYGPGGNVVGYNPYEVGKPSCST
YGMKPSSRYQGLCAAPGSSPAANSVYGANTIETYEYGYNSSPSSQTANNN
PPTNNINKSQFSYNQPRPKPVQTINPNPSPFNPQAAVPSASTFGGSSFGS
ASRGGSHAYTTDPSQSAGRYKHKLEAYRPSAAEFEKSVHKHTILRTYIEQ
NQQRQDQQQQQQQKEQDQQQQQPEPSSTKKPSRGWSLLTWRGASFLDH
BO09139.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8483-PA | 392 | CG8483-PA | 1..392 | 1..392 | 2118 | 100 | Plus |
CG9400-PA | 308 | CG9400-PA | 81..281 | 22..213 | 192 | 27.7 | Plus |
CG32679-PA | 254 | CG32679-PA | 63..250 | 39..229 | 190 | 32.2 | Plus |
Ag5r-PC | 256 | CG9538-PC | 42..256 | 20..226 | 164 | 27.2 | Plus |
Ag5r-PB | 256 | CG9538-PB | 42..256 | 20..226 | 164 | 27.2 | Plus |