Clone BO09139 Report

Search the DGRC for BO09139

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG8483-RA
Protein status:BO09139.pep: validated full length
Sequenced Size:1210

Clone Sequence Records

BO09139.3prime Sequence

879 bp (785 high quality bases) assembled on 2006-01-11

> BO09139.3prime
ATGGTCTAGAAAGCTTGCACCACGCCAGGTTAGAAGGCTCCATCCACGAC
TGGGTTTCTTGGTGCTCGAGGGCTCTGGCTGCTGCTGCTGCTGATCCTGT
TCCTTCTGTTGTTGCTGCTGCTGCTGATCCTGCCTCTGTTGATTCTGCTC
TATATAGGTGCGTAGTATGGTATGCTTGTGTACGGACTTCTCGAACTCGG
CCGCACTTGGCCGATACGCCTCGAGCTTGTGCTTATAGCGGCCTGCCGAC
TGCGATGGGTCCGTGGTGTAGGCGTGGCTGCCGCCCCTCGAGGCGCTGCC
AAACGAACTGCCGCCGAAGGTCGACGCTGATGGTACCGCTGCCTGTGGGT
TGAATGGGGAGGGATTTGGATTGATGGTTTGGACGGGCTTGGGTCTTGGT
TGGTTATAGCTGAACTGGCTCTTGTTAATGTTGTTAGTCGGCGGATTGTT
ATTGGCGGTTTGACTGGAAGGGCTGCTGTTGTAGCCGTACTCATACGTTT
CAATTGTGTTTGCTCCGTAAACGCTGTTGGCCGCTGGCGAGGATCCGGGA
GCGGCGCAGAGTCCTTGGTAGCGGGACGAAGGCTTCATGCCGTATGTGGA
GCACGATGGCTTTCCAACCTCATAGGGATTGTAGCCCACCACATTGCCAC
CAGGCCCATAATTGCAGACGTAGAGCTTGTTGTACTTGCTGGTATCCTTG
TACTCCGCATATCCACAGCCCACCAAGCTGGTCTCACCCCAAACCAGTTG
GGAATAGTGTCCAGTTTTGGGGGACCAGGCGTCCCCGAAGGAGTACTTCT
GCACCTCGTTAAACCAACTCTGGATGCGAGAGGGGAAATCACCGTCATCG
GCATCCAAAGGCGCCGTACTCCAGATGAT

BO09139.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-PA 1179 CG8483-RA 316..1176 879..19 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-RA 1869 CG8483-RA 603..1463 879..19 4305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13209160..13209791 19..650 3160 100 Plus
3R 32079331 3R 13210071..13210300 650..879 1150 100 Plus
Blast to na_te.dros performed 2015-02-03 09:06:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dnet\R1B 2038 Dnet\R1B NETR1B 2038bp 1079..1141 346..408 108 63.5 Plus

BO09139.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:02:59 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-PA 316..1179 16..879 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:46 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-PA 316..1179 16..879 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:44:11 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 603..1471 10..879 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:58:24 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 603..1471 10..879 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:58:24 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13209152..13209790 10..649 99 <- Plus
3R 13210071..13210300 650..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:44:11 Download gff for BO09139.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9034874..9035512 10..649 99 <- Plus
arm_3R 9035793..9036022 650..879 100   Plus

BO09139.5prime Sequence

851 bp (841 high quality bases) assembled on 2006-01-10

> BO09139.5prime
GAAGTTATCAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAA
TTATGATCATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATT
GCATCGGGCATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAA
TCGCCTCCGGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTG
CCGAGAATATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCT
CAGAAATGGGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAAT
AAATCGCTTTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGC
CTTTGGATGCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTT
AACGAGGTGCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGG
ACACTATTCCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGAT
ATGCGGAGTACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAAT
TATGGGCCTGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAA
GCCATCGTGCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGAC
TCTGCGCCGCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCA
AACACAATTGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCA
AACCGCCAATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCA
GCTATAACCAACCAAGACCCAAGCCCGTCCAAACCATCAATCCCAATCCC
T

BO09139.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-PA 1179 CG8483-RA 1..835 17..851 4150 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-RA 1869 CG8483-RA 288..1122 17..851 4160 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:52:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13209501..13209791 851..561 1440 99.7 Minus
3R 32079331 3R 13210071..13210329 561..303 1295 100 Minus
3R 32079331 3R 13210897..13211098 302..101 1010 100 Minus
3R 32079331 3R 13214094..13214178 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:52:49 has no hits.

BO09139.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:00 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:47 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:13 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1122 17..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:29 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1122 17..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:29 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13209501..13209790 562..851 99 <- Minus
3R 13210071..13210329 303..561 100 <- Minus
3R 13210897..13211097 102..302 100 <- Minus
3R 13214094..13214182 11..101 95 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:13 Download gff for BO09139.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9035223..9035512 562..851 99 <- Minus
arm_3R 9035793..9036051 303..561 100 <- Minus
arm_3R 9036619..9036819 102..302 100 <- Minus
arm_3R 9039816..9039904 11..101 95 <- Minus

BO09139.complete Sequence

1210 bp (1210 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631409

> BO09139.complete
GAAGTTATCAGTCGACATGATGCAGCCAAGTGCGGTATTACTAACCACAA
TTATGATCATCTCCTGCGAAGTGGCATTCGCCTGCAATGGAAAGATAATT
GCATCGGGCATCACGGCGGAAGAGAGATCAATCATCTTGCAGGAGCACAA
TCGCCTCCGGCAGATCGTGGCCACGGGTCGCTATCCAGGCCAGCCGGGTG
CCGAGAATATGCGGGAGATCGTCTGGGACGATGAGCTGGCCGCCAGAGCT
CAGAAATGGGCTGACAACTGCCAGTTCCGTCACGATCCGCACCGTACAAT
AAATCGCTTTACGATGGGCCAGAATCTGGCCATCATCTGGAGTACGGCGC
CTTTGGATGCCGATGACGGTGATTTCCCCTCTCGCATCCAGAGTTGGTTT
AACGAGGTGCAGAAGTACTCCTTCGGGGACGCCTGGTCCCCCAAAACTGG
ACACTATTCCCAACTGGTTTGGGGTGAGACCAGCTTGGTGGGCTGTGGAT
ATGCGGAGTACAAGGATACCAGCAAGTACAACAAGCTCTACGTCTGCAAT
TATGGGCCTGGTGGCAATGTGGTGGGCTACAATCCCTATGAGGTTGGAAA
GCCATCGTGCTCCACATACGGCATGAAGCCTTCGTCCCGCTACCAAGGAC
TCTGCGCCGCTCCCGGATCCTCGCCAGCGGCCAACAGCGTTTACGGAGCA
AACACAATTGAAACGTATGAGTACGGCTACAACAGCAGCCCTTCCAGTCA
AACCGCCAATAACAATCCGCCGACTAACAACATTAACAAGAGCCAGTTCA
GCTATAACCAACCAAGACCCAAGCCCGTCCAAACCATCAATCCAAATCCC
TCCCCATTCAACCCACAGGCAGCGGTACCATCAGCGTCGACCTTCGGCGG
CAGTTCGTTTGGCAGCGCCTCGAGGGGCGGCAGCCACGCCTACACCACGG
ACCCATCGCAGTCGGCAGGCCGCTATAAGCACAAGCTCGAGGCGTATCGG
CCAAGTGCGGCCGAGTTCGAGAAGTCCGTACACAAGCATACCATACTACG
CACCTATATAGAGCAGAATCAACAGAGGCAGGATCAGCAGCAGCAGCAAC
AACAGAAGGAACAGGATCAGCAGCAGCAGCAGCCAGAGCCCTCGAGCACC
AAGAAACCCAGTCGTGGATGGAGCCTTCTAACCTGGCGTGGTGCAAGCTT
TCTAGACCAT

BO09139.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-RA 1179 CG8483-PA 1..1176 17..1192 5880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-RA 1869 CG8483-RA 288..1463 17..1192 5880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13209160..13209791 1192..561 3160 100 Minus
3R 32079331 3R 13210071..13210329 561..303 1295 100 Minus
3R 32079331 3R 13210897..13211098 302..101 1010 100 Minus
3R 32079331 3R 13214094..13214178 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:56:16 has no hits.

BO09139.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:19 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 1..1179 17..1195 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:03 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1471 17..1201 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:04 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1463 17..1194 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:19 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1471 17..1201 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:34 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
CG8483-RA 288..1463 17..1194 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:34 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13209157..13209790 562..1194 99 <- Minus
3R 13210071..13210329 303..561 100 <- Minus
3R 13210897..13211097 102..302 100 <- Minus
3R 13214094..13214178 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:04 Download gff for BO09139.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9034879..9035512 562..1194 99 <- Minus
arm_3R 9035793..9036051 303..561 100 <- Minus
arm_3R 9036619..9036819 102..302 100 <- Minus
arm_3R 9039816..9039900 17..101 100   Minus

BO09139.pep Sequence

Translation from 16 to 1210

> BO09139.pep
MMQPSAVLLTTIMIISCEVAFACNGKIIASGITAEERSIILQEHNRLRQI
VATGRYPGQPGAENMREIVWDDELAARAQKWADNCQFRHDPHRTINRFTM
GQNLAIIWSTAPLDADDGDFPSRIQSWFNEVQKYSFGDAWSPKTGHYSQL
VWGETSLVGCGYAEYKDTSKYNKLYVCNYGPGGNVVGYNPYEVGKPSCST
YGMKPSSRYQGLCAAPGSSPAANSVYGANTIETYEYGYNSSPSSQTANNN
PPTNNINKSQFSYNQPRPKPVQTINPNPSPFNPQAAVPSASTFGGSSFGS
ASRGGSHAYTTDPSQSAGRYKHKLEAYRPSAAEFEKSVHKHTILRTYIEQ
NQQRQDQQQQQQQKEQDQQQQQPEPSSTKKPSRGWSLLTWRGASFLDH

BO09139.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8483-PA 392 CG8483-PA 1..392 1..392 2118 100 Plus
CG9400-PA 308 CG9400-PA 81..281 22..213 192 27.7 Plus
CG32679-PA 254 CG32679-PA 63..250 39..229 190 32.2 Plus
Ag5r-PC 256 CG9538-PC 42..256 20..226 164 27.2 Plus
Ag5r-PB 256 CG9538-PB 42..256 20..226 164 27.2 Plus