Clone Sequence Records
BO09145.3prime Sequence
939 bp (759 high quality bases) assembled on 2006-01-11
> BO09145.3prime
ATGGTCTAGAAAGCTTGCTGTTGTCCCCTGCTGTAGTGGCTCCGAGTGGA
AGCTCCAGGCCACCGCCCACCGAGTCGTGTGTCCCTGATGGAATTCAGTG
GTGCTGACATTCGCCACCTGCAGCTCCTTGAGGTAATCCAGTATTCTTGG
AACGTTGGCCTTGACGCCCAGCATCGTGGTGAAGATTCGCACACGCTCCT
TGTTCTCCAGACTCTCGTCTATAATGCGTTGCACAAACTGTACCTCGCCA
CCCACGCAGGTGAGTTCCTCCTGGCTTCCAGTTCTGGCATTATTGGGTGC
TGGTCGTCTCTCTGGATTCCTGGTATTGCCGCCTAAGGGATTTGGTAAGT
TCGAGTCGAAGAAGGGTGGATTGCACAGGCAAAATTGATACTGCAACTGT
TGCTGATCCTGCTCAAAATAGCTCTTAAAGATGTTCGTGTTGTCTGGTTG
AGCATAGACTTCTATAAGGCTTTCCATGTGATTTCTCTTTACATTCTCCT
TGGCGTATTCTATGTTTTGCGGTTTCGATTCCAAAGCCAACATGTGCCAA
CCATTTTTCTTGGCCCCAAGGAGTGAATAAATGCAGGAGGAGCCGCAGCC
TATATCTATACCACGTATGTTCTGCAAATTTAGAGGTTCCATTAGATCCT
CCAACCACAAAATGTAATTCAAACGTAGTGCTAATGTGGGCACCAAACTT
CCGGGTGCAAAATCCACATCTAAATCGTAATATTCCTTCAACAGCATTTT
GGTCAACTCACGAAGGGTCTTTTCATTGCGAAAGTTCACAGAAACCTTGC
CATTGAGCTCCAACTGGCACTGCTGCCGAAAATCTTTGTATTTTATAGCC
ATTTTGGTATAGTCGGGCTGCGTGCGTAACACATTACGTGGATGCATGCC
GACTATCTTTTGGTTCCCTTAGTTTTTACATGTCGACTG
BO09145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PA | 918 | CG7544-RA | 19..915 | 915..19 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 110..1021 | 929..19 | 4535 | 99.9 | Minus |
CG7544-RA | 1585 | CG7544-RA | 110..1021 | 929..19 | 4535 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 601..188 | 2070 | 100 | Minus |
2R | 25286936 | 2R | 15148149..15148361 | 811..599 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 15148883..15149052 | 188..19 | 850 | 100 | Minus |
2R | 25286936 | 2R | 15147969..15148089 | 929..810 | 555 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:07:31 has no hits.
BO09145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:09 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..918 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:03:59 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..918 | 15..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:57:27 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 110..1028 | 11..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:39 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 110..1028 | 11..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:39 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15147969..15148088 | 811..929 | 99 | -> | Minus |
2R | 15148150..15148360 | 600..810 | 100 | -> | Minus |
2R | 15148412..15148823 | 188..599 | 100 | -> | Minus |
2R | 15148884..15149059 | 11..187 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:57:27 Download gff for
BO09145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035474..11035593 | 811..929 | 99 | -> | Minus |
arm_2R | 11035655..11035865 | 600..810 | 100 | -> | Minus |
arm_2R | 11035917..11036328 | 188..599 | 100 | -> | Minus |
arm_2R | 11036389..11036564 | 11..187 | 97 | | Minus |
BO09145.5prime Sequence
892 bp (862 high quality bases) assembled on 2006-01-10
> BO09145.5prime
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATCANGGACACACGACTCGGTGGGCGGTGGCC
BO09145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PA | 918 | CG7544-RA | 1..876 | 17..892 | 4361 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:15:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 107..982 | 17..892 | 4369 | 99.9 | Plus |
CG7544-RA | 1585 | CG7544-RA | 107..982 | 17..892 | 4369 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 349..762 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 15148149..15148361 | 139..351 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 15148883..15149013 | 762..892 | 644 | 99.2 | Plus |
2R | 25286936 | 2R | 15147966..15148089 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:15:29 has no hits.
BO09145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:10 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:00 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:10 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..982 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:12 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..982 | 17..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:12 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15147966..15148088 | 17..139 | 100 | -> | Plus |
2R | 15148150..15148360 | 140..350 | 100 | -> | Plus |
2R | 15148412..15148823 | 351..762 | 100 | -> | Plus |
2R | 15148884..15149013 | 763..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:10 Download gff for
BO09145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035471..11035593 | 17..139 | 100 | -> | Plus |
arm_2R | 11035655..11035865 | 140..350 | 100 | -> | Plus |
arm_2R | 11035917..11036328 | 351..762 | 100 | -> | Plus |
arm_2R | 11036389..11036518 | 763..892 | 99 | | Plus |
BO09145.complete Sequence
949 bp (949 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631410
> BO09145.complete
GAAGTTATCAGTCGACATGGTAAAAACTAAGGGAAACCAAAAGATAGTCG
GCATGCATCCACGTAATGTGTTACGCACGCAGCCCGACTATACCAAAATG
GCTATAAAATACAAAGATTTTCGGCAGCAGTGCCAGTTGGAGCTCAATGG
CAAGGTTTCTGTGAACTTTCGCAATGAAAAGACCCTTCGTGAGTTGACCA
AAATGCTGTTGAAGGAATATTACGATTTAGATGTGGATTTTGCACCCGGA
AGTTTGGTGCCCACATTAGCACTACGTTTGAATTACATTTTGTGGTTGGA
GGATCTAATGGAACCTCTAAATTTGCAGAACATACGTGGTATAGATATAG
GCTGCGGCTCCTCCTGCATTTATTCACTCCTTGGGGCCAAGAAAAATGGT
TGGCACATGTTGGCTTTGGAATCGAAACCGCAAAACATAGAATACGCCAA
GGAGAATGTAAAGAGAAATCACATGGAAAGCCTTATAGAAGTCTATGCTC
AACCAGACAACACGAACATCTTTAAGAGCTATTTTGAGCAGGATCAGCAA
CAGTTGCAGTATCAATTTTGCCTGTGCAATCCACCCTTCTTCGACTCGAA
CTTACCAAATCCCTTAGGCGGCAATACCAGGAATCCAGAGAGACGACCAG
CACCCAATAATGCCAGAACTGGAAGCCAGGAGGAACTCACCTGCGTGGGT
GGCGAGGTACAGTTTGTGCAACGCATTATAGACGAGAGTCTGGAGAACAA
GGAGCGTGTGCGAATCTTCACCACGATGCTGGGCGTCAAGGCCAACGTTC
CAAGAATACTGGATTACCTCAAGGAGCTGCAGGTGGCGAATGTCAGCACC
ACTGAATTCCATCAGGGACACACGACTCGGTGGGCGGTGGCCTGGAGCTT
CCACTCGGAGCCACTACAGCAGGGGACAACAGCAAGCTTTCTAGACCAT
BO09145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 918 | CG7544-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG7544-RA | 918 | CG7544-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-RB | 1592 | CG7544-RB | 107..1021 | 17..931 | 4575 | 100 | Plus |
CG7544-RA | 1585 | CG7544-RA | 107..1021 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15148410..15148823 | 349..762 | 2070 | 100 | Plus |
2R | 25286936 | 2R | 15148149..15148361 | 139..351 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 15148883..15149052 | 762..931 | 850 | 100 | Plus |
2R | 25286936 | 2R | 15147966..15148089 | 17..140 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:35:17 has no hits.
BO09145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:53 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 1..918 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:47 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RB | 90..1011 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:40 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..1021 | 17..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:54 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 90..1011 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:58 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7544-RA | 107..1021 | 17..933 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:58 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15148412..15148823 | 351..762 | 100 | -> | Plus |
2R | 15148884..15149052 | 763..933 | 98 | | Plus |
2R | 15148150..15148360 | 140..350 | 100 | -> | Plus |
2R | 15147966..15148088 | 17..139 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:40 Download gff for
BO09145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11035471..11035593 | 17..139 | 100 | -> | Plus |
arm_2R | 11035655..11035865 | 140..350 | 100 | -> | Plus |
arm_2R | 11035917..11036328 | 351..762 | 100 | -> | Plus |
arm_2R | 11036389..11036557 | 763..933 | 98 | | Plus |
BO09145.pep Sequence
Translation from 16 to 949
> BO09145.pep
MVKTKGNQKIVGMHPRNVLRTQPDYTKMAIKYKDFRQQCQLELNGKVSVN
FRNEKTLRELTKMLLKEYYDLDVDFAPGSLVPTLALRLNYILWLEDLMEP
LNLQNIRGIDIGCGSSCIYSLLGAKKNGWHMLALESKPQNIEYAKENVKR
NHMESLIEVYAQPDNTNIFKSYFEQDQQQLQYQFCLCNPPFFDSNLPNPL
GGNTRNPERRPAPNNARTGSQEELTCVGGEVQFVQRIIDESLENKERVRI
FTTMLGVKANVPRILDYLKELQVANVSTTEFHQGHTTRWAVAWSFHSEPL
QQGTTASFLDH
BO09145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7544-PB | 305 | CG7544-PB | 1..305 | 1..305 | 1618 | 100 | Plus |
CG7544-PA | 305 | CG7544-PA | 1..305 | 1..305 | 1618 | 100 | Plus |