Clone Sequence Records
BO09151.3prime Sequence
900 bp (838 high quality bases) assembled on 2006-01-11
> BO09151.3prime
ATGGTCTAGAAAGCTTGCATCATCGATAGTGTACTCGGGCATCTTCTCGT
ACTTTTGCTTGGTGGCCTCATGGGTGGTGTCCACAAGCAACACCGTGTGC
GAGTAACCCATAGTCACTTGAGGTATTTTAATGTTGTCCAACTTTGGCAC
CTCCTTGGGCACCGTCGACGACTTCTGGAACTCCCCAATGCCCAGCTCGC
CAAACGTGGGCGATGCGCCCCAAGCGATCAGTGTGTCGTCGGCCGAAATC
ATAATCGATGTATTGGCACAGCCAATGTCGGTAATGTTCCAGCCGGAAAG
ATCCTGCACTGGCTTGGGGTACATATTTGCCTCGCCCGTCTTCTTATTCT
GTCCGAACAAAAACAGCAGGCCCAGCTCGTTGACGATCAGACTGAAAGTG
GAGCCGCAAAAGACGCTGCGCCCACCCCGACCCTGAGTATCGAAAAACTT
CATTAAACGCGGCACCATTTCGTCCTTGGGCTCTGCGTGTCCGAGACGCC
CGAAACCGCCAAAGCCCCAGCTATAAACGCGCTTCTTGGAGTCGATGGCG
ACCGTGTGATTATTGCCGCAAGCAAAGTCAACTATCTGCACGCCATCGAC
TGGCGTTACATGACCCTCCTTGCTCTTCTCTATGTACAAAACGACCTTTT
TGGGCGACGTCTCGAAATGGAATGACAATTTGTTGGCGTTGACAAAGTAC
TTGGCGTCAGTATTGTGTCCCAACTGACCGTACTCCGGCAGCCCAAATGT
GTGCAGGCTACCTTTAATGTCCAGAATAACAGAGAACTCAGCTCCGCAAC
CGATGCGAATGATCGGCGGACCTCGGTAGTTAATTGGCGTGGGCGAATAA
ATGTTAGCATGCGTATTTCCCACACCGCACTGGCCGGACTTGTTTTCGCC
BO09151.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PA | 1464 | CG9135-RA | 580..1461 | 900..19 | 4410 | 100 | Minus |
CG9135-PB | 1464 | CG9135-RB | 580..1461 | 900..19 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 763..1644 | 900..19 | 4410 | 100 | Minus |
CG9135-RC | 2227 | CG9135-RC | 724..1605 | 900..19 | 4410 | 100 | Minus |
CG9135-RB | 1978 | CG9135-RB | 870..1751 | 900..19 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052721..6053255 | 553..19 | 2675 | 100 | Minus |
2L | 23513712 | 2L | 6052314..6052663 | 900..551 | 1750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:24:40 has no hits.
BO09151.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:16 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PA | 580..1464 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:08 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PB | 580..1464 | 18..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:34:29 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 724..1605 | 19..900 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:03 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 870..1751 | 19..900 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:03 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6052314..6052661 | 553..900 | 100 | -> | Minus |
2L | 6052722..6053255 | 19..552 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:34:29 Download gff for
BO09151.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6052314..6052661 | 553..900 | 100 | -> | Minus |
arm_2L | 6052722..6053255 | 19..552 | 100 | | Minus |
BO09151.5prime Sequence
982 bp (842 high quality bases) assembled on 2006-01-10
> BO09151.5prime
GAAGTTATCAGTCGACATGTCGGCCAAGCGAAAGGCAGGTGGCAATGGAG
CCGGACCCAACAAGCGGCGACCCAAAAAGAAGGAGTCGGACTACGAGGAC
GAGTTCAGCGACGAGTCCGACGACGATGGCGTGCAGCAGCAGGCAGCGGC
CGCCAACCAGATGGAGGTTCTCATTCCCCACGACGACCTCGACCCGCCTA
GCAAGCTTCCCGAGGACTTGCTGGCCACGCTAGAGAAGACTCCAGGTCAG
ATGCTGATCGCCGGCATGGTGACCTGGGACCTGACTGGCAAGCGGGACCG
CAAGAACGTCACGAAGGTGCGGCCGAATCTGTACAGCTTCCATCGGTTCA
CAGAAGAGAAGTACCGATATGTGGCCAGCGGACCCAGTGCCGCACACACC
ATTCTTATCAACATGGACCGCAAGGCGCTCGGTTTCGGGCGTAATCCCAG
CGGCCAGCTGGGCCTCAGCCAAGACATCAAGTTGGCGGAGAAGCCCACCA
TTATTCCGGCCCTCGAACAGCTGAACATAGTGCAAGCTGCTGTCGGCCGG
CACCACACTCTGTTTCTCACTGACACGGGAACCGTATACGCCTGCGGCGA
AAACAAGTCCGGCCAGTGCGGTGTGGGAAATACGCATGCTAACATTTATT
CGCCCACGCCAATTAACTACCGAGGTCCGCCGATCATTCGCATCGGTTGC
GGAGCTGAGTTCTCTGTTATTCTGGACATTAAAGGTAGCCTGCACACATT
TGGGCTGCCGGAGTACGGTCAGTTGGGACACAATACTGACGCCAAGTACT
TTGTCAACGCCAACAAATTGTCATTCCATTTCGAGACGTCGCCCAAAAAG
GTCGTTTTGTACATAGAGAAGAGCAAGGAGGGTCATGTAACGCCAGTCGA
TGGCGTGCAGATAGTTGACTTTGCTTGCGGCCATAATCACACGGGTCGCA
TCGACTCCAAGAAGCGCGTTTATAGCTGGGGC
BO09151.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PA | 1464 | CG9135-RA | 1..928 | 17..944 | 4615 | 99.8 | Plus |
CG9135-PB | 1464 | CG9135-RB | 1..928 | 17..944 | 4615 | 99.8 | Plus |
CG9135-PA | 1464 | CG9135-RA | 933..966 | 949..982 | 170 | 100 | Plus |
CG9135-PB | 1464 | CG9135-RB | 933..966 | 949..982 | 170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:42:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 184..1149 | 17..982 | 4770 | 99.7 | Plus |
CG9135-RC | 2227 | CG9135-RC | 145..1110 | 17..982 | 4770 | 99.7 | Plus |
CG9135-RB | 1978 | CG9135-RB | 291..1256 | 17..982 | 4770 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:42:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052078..6052662 | 360..944 | 2910 | 99.8 | Plus |
2L | 23513712 | 2L | 6051678..6052022 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:42:35 has no hits.
BO09151.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:17 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PA | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:10 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-PB | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:08 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 140..1110 | 10..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:46 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 286..1256 | 10..982 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:46 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6051673..6052022 | 10..361 | 98 | -> | Plus |
2L | 6052080..6052661 | 362..943 | 99 | -> | Plus |
2L | 6052722..6052760 | 944..982 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:08 Download gff for
BO09151.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6051673..6052022 | 10..361 | 98 | -> | Plus |
arm_2L | 6052080..6052661 | 362..943 | 99 | -> | Plus |
arm_2L | 6052722..6052760 | 944..982 | 95 | | Plus |
BO09151.complete Sequence
1495 bp (1495 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631412
> BO09151.complete
GAAGTTATCAGTCGACATGTCGGCCAAGCGAAAGGCAGGTGGCAATGGAG
CCGGACCCAACAAGCGGCGACCCAAAAAGAAGGAGTCGGACTACGAGGAC
GAGTTCAGCGACGAGTCCGACGACGATGGCGTGCAGCAGCAGGCAGCGGC
CGCCAACCAGATGGAGGTTCTCATTCCCCACGACGACCTCGACCCGCCTA
GCAAGCTTCCCGAGGACTTGCTGGCCACGCTAGAGAAGACTCCAGGTCAG
ATGCTGATCGCCGGCATGGTGACCTGGGACCTGACTGGCAAGCGGGACCG
CAAGAACGTCACGAAGGTGCGGCCGAATCTGTACAGCTTCCATCGGTTCA
CAGAAGAGAAGTACCGATATGTGGCCAGCGGACCCAGTGCCGCACACACC
ATTCTTATCAACATGGACCGCAAGGCGCTCGGTTTCGGGCGTAATCCCAG
CGGCCAGCTGGGCCTCAGCCAAGACATCAAGTTGGCGGAGAAGCCCACCA
TTATTCCGGCCCTCGAACAGCTGAACATAGTGCAAGCTGCTGTCGGCCGG
CACCACACTCTGTTTCTCACTGACACGGGAACCGTATACGCCTGCGGCGA
AAACAAGTCCGGCCAGTGCGGTGTGGGAAATACGCATGCTAACATTTATT
CGCCCACGCCAATTAACTACCGAGGTCCGCCGATCATTCGCATCGGTTGC
GGAGCTGAGTTCTCTGTTATTCTGGACATTAAAGGTAGCCTGCACACATT
TGGGCTGCCGGAGTACGGTCAGTTGGGACACAATACTGACGCCAAGTACT
TTGTCAACGCCAACAAATTGTCATTCCATTTCGAGACGTCGCCCAAAAAG
GTCGTTTTGTACATAGAGAAGAGCAAGGAGGGTCATGTAACGCCAGTCGA
TGGCGTGCAGATAGTTGACTTTGCTTGCGGCAATAATCACACGGTCGCCA
TCGACTCCAAGAAGCGCGTTTATAGCTGGGGCTTTGGCGGTTTCGGGCGT
CTCGGACACGCAGAGCCCAAGGACGAAATGGTGCCGCGTTTAATGAAGTT
TTTCGATACTCAGGGTCGGGGTGGGCGCAGCGTCTTTTGCGGCTCCACTT
TCAGTCTGATCGTCAACGAGCTGGGCCTGCTGTTTTTGTTCGGACAGAAT
AAGAAGACGGGCGAGGCAAATATGTACCCCAAGCCAGTGCAGGATCTTTC
CGGCTGGAACATTACCGACATTGGCTGTGCCAATACATCGATTATGATTT
CGGCCGACGACACACTGATCGCTTGGGGCGCATCGCCCACGTTTGGCGAG
CTGGGCATTGGGGAGTTCCAGAAGTCGTCGACGGTGCCCAAGGAGGTGCC
AAAGTTGGACAACATTAAAATACCTCAAGTGACTATGGGTTACTCGCACA
CGGTGTTGCTTGTGGACACCACCCATGAGGCCACCAAGCAAAAGTACGAG
AAGATGCCCGAGTACACTATCGATGATGCAAGCTTTCTAGACCAT
BO09151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:16:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1464 | CG9135-PD | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG9135-RC | 1464 | CG9135-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
CG9135-RB | 1464 | CG9135-PB | 1..1461 | 17..1477 | 7305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-RD | 1871 | CG9135-RD | 184..1644 | 17..1477 | 7305 | 100 | Plus |
CG9135-RC | 2227 | CG9135-RC | 145..1605 | 17..1477 | 7305 | 100 | Plus |
CG9135-RB | 1978 | CG9135-RB | 291..1751 | 17..1477 | 7305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6052078..6052663 | 360..945 | 2930 | 100 | Plus |
2L | 23513712 | 2L | 6052721..6053255 | 943..1477 | 2675 | 100 | Plus |
2L | 23513712 | 2L | 6051678..6052022 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:16:55 has no hits.
BO09151.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:59 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 1..1464 | 17..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:51 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 296..1761 | 10..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:10:51 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RA | 145..1605 | 17..1479 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:59 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 296..1761 | 10..1477 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:07:21 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9135-RB | 291..1751 | 17..1479 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:07:21 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6051678..6052022 | 17..361 | 100 | -> | Plus |
2L | 6052080..6052661 | 362..943 | 100 | -> | Plus |
2L | 6052722..6053255 | 944..1479 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:10:51 Download gff for
BO09151.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6051678..6052022 | 17..361 | 100 | -> | Plus |
arm_2L | 6052080..6052661 | 362..943 | 100 | -> | Plus |
arm_2L | 6052722..6053255 | 944..1479 | 99 | | Plus |
BO09151.pep Sequence
Translation from 16 to 1495
> BO09151.pep
MSAKRKAGGNGAGPNKRRPKKKESDYEDEFSDESDDDGVQQQAAAANQME
VLIPHDDLDPPSKLPEDLLATLEKTPGQMLIAGMVTWDLTGKRDRKNVTK
VRPNLYSFHRFTEEKYRYVASGPSAAHTILINMDRKALGFGRNPSGQLGL
SQDIKLAEKPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQ
CGVGNTHANIYSPTPINYRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEY
GQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIV
DFACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQG
RGGRSVFCGSTFSLIVNELGLLFLFGQNKKTGEANMYPKPVQDLSGWNIT
DIGCANTSIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKLDNI
KIPQVTMGYSHTVLLVDTTHEATKQKYEKMPEYTIDDASFLDH
BO09151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9135-PD | 487 | CG9135-PD | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PC | 487 | CG9135-PC | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PB | 487 | CG9135-PB | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9135-PA | 487 | CG9135-PA | 1..487 | 1..487 | 2579 | 100 | Plus |
CG9153-PA | 1058 | CG9153-PA | 10..318 | 140..466 | 304 | 30.5 | Plus |