Clone Sequence Records
BO09152.3prime Sequence
933 bp (823 high quality bases) assembled on 2006-01-11
> BO09152.3prime
ATGGTCTAGAAAGCTTGCATTACTTAAGTGTATCGAAATAATTTTAATGT
CGTCGTAGGGCTTGTCCGTCTTGGGATTCGCCTTGGAATTGCAAATGTTG
AGAACCACCTCCATGCCGCGGTAAACTCTTCCGAACACCGTGTGCTTGTT
GTCGAGCCAGGGCGTGGGCAGGACTGTGATAAAGAACTGGCTTCCATTCG
TGTTTGGACCCGCGTTAGCCATGCTGACCGTGTAGGGCCGATCGTGTTTC
AGGCTCGGCACGAACTCGTCTTTGAAATCGCTTCCCCAAATGGATTTGCC
GCCCGTGCCCGTTCCCGTGGGATCGCCAGTCTGCACCATGAAGCCCTTGA
TCACGCGATGGAATATGTGTCCATTGTAGTACCCATTTTTCGCATGAACA
CAGAAGTTCTCAACCGTCTTTGGAACCTCCTTGAAGAACAGCCTCATGTG
GATATCGCCTTTCGTGGTGTGGAGCACCACGTTCTCGTAGATGCGTTGCA
CGACTGAAGCTTCCGGCACGGCGATAATGTCCTCCTTCGAGGGCTTCTCG
TTGAAAATATCGCGGTCGACATCCTGCAGATCCGAGGGCAGTCTTCGGCT
GTACAAATAGAAGCGACTTTTTTTGTAAGCAGTGCAAAAGGCTGTTGGAT
CGTTAAGGATATTCTGGAGTGCTGGGTTTTCACTGGCCTCTTGCTCCATT
GTTATAGCAGCTTTTTGGCGCTTAATTCTTCCTTGAAACAAGGCCACCTG
GAGGGGCCGTATGTTGTCGGTTTTTCCTAGAATTGTGACGCAGCGATTCG
TTACCACATTGATCACCTTGATGCCCNACATCGTTGGGTAGAGCAAGAAG
TTGCCAGTGCTGTCGAAACAAATATTAAGGGTTGCATTCTGGGCAGTCTT
CTCCAGATCCCGCTCAGCCGCCATTCTTCTGCC
BO09152.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-PA | 1914 | CG3511-RA | 997..1911 | 933..19 | 4506 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-RB | 2044 | CG3511-RB | 1054..1968 | 933..19 | 4534 | 99.7 | Minus |
CG3511-RA | 2202 | CG3511-RA | 1212..2126 | 933..19 | 4534 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24573180..24573484 | 927..623 | 1484 | 99 | Minus |
2R | 25286936 | 2R | 24573995..24574215 | 383..163 | 1105 | 100 | Minus |
2R | 25286936 | 2R | 24574283..24574427 | 163..19 | 725 | 100 | Minus |
2R | 25286936 | 2R | 24573814..24573939 | 505..380 | 630 | 100 | Minus |
2R | 25286936 | 2R | 24573552..24573670 | 622..504 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:24:15 has no hits.
BO09152.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:18 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-PA | 997..1914 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:11 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-PA | 997..1914 | 16..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:20 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 1212..2131 | 13..933 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:53 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 1212..2131 | 13..933 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24573180..24573484 | 623..927 | 99 | -> | Minus |
2R | 24573552..24573670 | 504..622 | 100 | -> | Minus |
2R | 24573816..24573936 | 383..503 | 100 | -> | Minus |
2R | 24573996..24574215 | 163..382 | 100 | -> | Minus |
2R | 24574284..24574432 | 13..162 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:20 Download gff for
BO09152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20461807..20461955 | 13..162 | 98 | | Minus |
arm_2R | 20461519..20461738 | 163..382 | 100 | -> | Minus |
arm_2R | 20461075..20461193 | 504..622 | 100 | -> | Minus |
arm_2R | 20461339..20461459 | 383..503 | 100 | -> | Minus |
arm_2R | 20460703..20461007 | 623..927 | 99 | -> | Minus |
BO09152.5prime Sequence
940 bp (789 high quality bases) assembled on 2006-01-10
> BO09152.5prime
GAAGTTATCAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCA
GTGCCCCGGAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAA
AAAGAGGCGGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGA
GCAGAGCGCTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAAC
ACATCTACCTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTAC
ATGCACCGCGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGT
AGTGACCGCCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGC
TGGGCATCGAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAA
TCACTGACCACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGA
TCAGACAGCCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCA
TTCGATTGGGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGA
GATGCCGTACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACA
CATCTACGACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAAC
TTCACTCGGCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACC
GTCATTTCTGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAA
GTACGACTACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCCAGCTAG
ACACAAGCCTCTTTTGAGTTGCCAAACAGAAGACCCCAGTCACGGGTTTA
GCCGCCACGCCGGATGGAAAGCGTTTTGCCGCCATTTCCACAGATCGTAA
GGTCCGCGTCTTTCAGTCAACACGGGCAAGTTGATCCGGG
BO09152.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-PA | 1914 | CG3511-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG3511-PA | 1914 | CG3511-RA | 803..901 | 819..917 | 470 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-RB | 2044 | CG3511-RB | 58..982 | 17..940 | 4525 | 99.5 | Plus |
CG3511-RA | 2202 | CG3511-RA | 216..1140 | 17..940 | 4525 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24572620..24572857 | 570..807 | 1160 | 99.2 | Plus |
2R | 25286936 | 2R | 24572124..24572328 | 185..389 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 24572384..24572569 | 388..573 | 930 | 100 | Plus |
2R | 25286936 | 2R | 24571906..24572074 | 17..185 | 845 | 100 | Plus |
2R | 25286936 | 2R | 24572927..24573049 | 819..940 | 550 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:49:57 has no hits.
BO09152.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:19 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:13 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-PA | 1..925 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:41 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 216..1140 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:45 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 216..1140 | 17..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:45 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24571906..24572074 | 17..185 | 100 | -> | Plus |
2R | 24572125..24572328 | 186..389 | 100 | -> | Plus |
2R | 24572386..24572569 | 390..573 | 100 | -> | Plus |
2R | 24572624..24572856 | 574..806 | 99 | -> | Plus |
2R | 24572915..24573049 | 807..940 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:41 Download gff for
BO09152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20459429..20459597 | 17..185 | 100 | -> | Plus |
arm_2R | 20459648..20459851 | 186..389 | 100 | -> | Plus |
arm_2R | 20459909..20460092 | 390..573 | 100 | -> | Plus |
arm_2R | 20460147..20460379 | 574..806 | 99 | -> | Plus |
arm_2R | 20460438..20460572 | 807..940 | 97 | | Plus |
BO09152.complete Sequence
1945 bp (1945 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631413
> BO09152.complete
GAAGTTATCAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCA
GTGCCCCGGAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAA
AAAGAGGCGGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGA
GCAGAGCGCTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAAC
ACATCTACCTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTAC
ATGCACCGCGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGT
AGTGACCGCCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGC
TGGGCATCGAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAA
TCACTGACCACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGA
TCAGACAGCCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCA
TTCGATTGGGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGA
GATGCCGTACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACA
CATCTACGACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAAC
TTCACTCGGCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACC
GTCATTTCTGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAA
GTACGACTACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCAAGCTAG
ACACAAGCCTCTTTGAGTTTGCCAAACAGAAGACCCAAGTCACGGGTTTA
GCCGCCACGCCGGATGGAAAGCGTTTTGCCGCCATTTCCACAGATCGTAA
GGTCCGCGTCTTTCAGTTCAACACGGGCAAGTTGATCCGGGTATTCGATG
AAGCTCTATCTACATACACCCAAATGCAGCAGACGAAGCACGCCCTGCCC
AACATGGAGTTTGGCAGAAGAATGGCGGCTGAGCGGGATCTGGAGAAGAC
TGCCCAGAATGCAACCCTTAATATTTTGTTCGACAGCACTGGCAACTTCT
TGCTCTACCCAACGATGTTGGGCATCAAGGTGATCAATGTGGTAACGAAT
CGCTGCGTCACAATTCTAGGAAAAACCGACAACATACGGCCCCTCCAGGT
GGCCTTGTTTCAAGGAAGAATTAAGCGCCAAAAAGCTGCTATAACAATGG
AGCAAGAGGCCAGTGAAAACCCAGCACTCCAGAATATCCTTAACGATCCA
ACAGCCTTTTGCACTGCTTACAAAAAAAGTCGCTTCTATTTGTACAGCCG
AAGACTGCCCTCGGATCTGCAGGATGTCGACCGCGATATTTTCAACGAGA
AGCCCTCGAAGGAGGACATTATCGCCGTGCCGGAAGCTTCAGTCGTGCAA
CGCATCTACGAGAACGTGGTGCTCCACACCACGAAAGGCGATATCCACAT
GAGGCTGTTCTTCAAGGAGGTTCCAAAGACGGTTGAGAACTTCTGTGTTC
ATGCGAAAAATGGGTACTACAATGGACACATATTCCATCGCGTGATCAAG
GGCTTCATGGTGCAGACTGGCGATCCCACGGGAACGGGCACGGGCGGCAA
ATCCATTTGGGGAAGCGATTTCAAAGACGAGTTCGTGCCGAGCCTGAAAC
ACGATCGGCCCTACACGGTCAGCATGGCTAACGCGGGTCCAAACACGAAT
GGAAGCCAGTTCTTTATCACAGTCCTGCCCACGCCCTGGCTCGACAACAA
GCACACGGTGTTCGGAAGAGTTTACCGCGGCATGGAGGTGGTTCTCAACA
TTTGCAATTCCAAGGCGAATCCCAAGACGGACAAGCCCTACGACGACATT
AAAATTATTTCGATACACTTAAGTAATGCAAGCTTTCTAGACCAT
BO09152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-RB | 1914 | CG3511-PB | 1..1911 | 17..1927 | 9555 | 100 | Plus |
CG3511-RA | 1914 | CG3511-PA | 1..1911 | 17..1927 | 9555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-RB | 2044 | CG3511-RB | 58..1968 | 17..1927 | 9555 | 100 | Plus |
CG3511-RA | 2202 | CG3511-RA | 216..2126 | 17..1927 | 9555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24573180..24573484 | 1019..1323 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 24572620..24572857 | 570..807 | 1175 | 99.6 | Plus |
2R | 25286936 | 2R | 24573995..24574215 | 1563..1783 | 1105 | 100 | Plus |
2R | 25286936 | 2R | 24572915..24573128 | 807..1020 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 24572124..24572328 | 185..389 | 1025 | 100 | Plus |
2R | 25286936 | 2R | 24572384..24572569 | 388..573 | 930 | 100 | Plus |
2R | 25286936 | 2R | 24571906..24572074 | 17..185 | 845 | 100 | Plus |
2R | 25286936 | 2R | 24574283..24574427 | 1783..1927 | 725 | 100 | Plus |
2R | 25286936 | 2R | 24573814..24573939 | 1441..1566 | 630 | 100 | Plus |
2R | 25286936 | 2R | 24573552..24573670 | 1324..1442 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:40:12 has no hits.
BO09152.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:35 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 1..1914 | 17..1930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:37 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 174..2089 | 17..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:22 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 216..2126 | 17..1929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:35 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 174..2089 | 17..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:49 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3511-RA | 216..2126 | 17..1929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:49 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24573816..24573936 | 1443..1563 | 100 | -> | Plus |
2R | 24573996..24574215 | 1564..1783 | 100 | -> | Plus |
2R | 24574284..24574427 | 1784..1929 | 98 | | Plus |
2R | 24571906..24572074 | 17..185 | 100 | -> | Plus |
2R | 24572125..24572328 | 186..389 | 100 | -> | Plus |
2R | 24572386..24572569 | 390..573 | 100 | -> | Plus |
2R | 24572624..24572856 | 574..806 | 100 | -> | Plus |
2R | 24572915..24573128 | 807..1020 | 100 | -> | Plus |
2R | 24573182..24573484 | 1021..1323 | 100 | -> | Plus |
2R | 24573552..24573670 | 1324..1442 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:22 Download gff for
BO09152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20461519..20461738 | 1564..1783 | 100 | -> | Plus |
arm_2R | 20461807..20461950 | 1784..1929 | 98 | | Plus |
arm_2R | 20461339..20461459 | 1443..1563 | 100 | -> | Plus |
arm_2R | 20459429..20459597 | 17..185 | 100 | -> | Plus |
arm_2R | 20459648..20459851 | 186..389 | 100 | -> | Plus |
arm_2R | 20459909..20460092 | 390..573 | 100 | -> | Plus |
arm_2R | 20460147..20460379 | 574..806 | 100 | -> | Plus |
arm_2R | 20460438..20460651 | 807..1020 | 100 | -> | Plus |
arm_2R | 20460705..20461007 | 1021..1323 | 100 | -> | Plus |
arm_2R | 20461075..20461193 | 1324..1442 | 100 | -> | Plus |
BO09152.pep Sequence
Translation from 16 to 1945
> BO09152.pep
MSDKTKEDLKRSAPEEENEPQEESVSSEKEAEGEEDAWIGPMPSEQSAPA
PAKKKKVLPYEHIYLENLPNAESYERSYMHRDVITHLVCTKTDFVVTASL
DGHIKFWKKGELGIEFVKHFRSHLVPIKSLTTNDSGTLLCSAATDQTAKV
FDVVNFDMINIIRLGYTPQCSEWINGPGDAVQALAISDSESSRIHIYDGQ
GGGEALHTLEKLHSAPVVAMCLNVAMETVISVDRNGILEYWQNSKYDYKF
PQRLVNFDSKLDTSLFEFAKQKTQVTGLAATPDGKRFAAISTDRKVRVFQ
FNTGKLIRVFDEALSTYTQMQQTKHALPNMEFGRRMAAERDLEKTAQNAT
LNILFDSTGNFLLYPTMLGIKVINVVTNRCVTILGKTDNIRPLQVALFQG
RIKRQKAAITMEQEASENPALQNILNDPTAFCTAYKKSRFYLYSRRLPSD
LQDVDRDIFNEKPSKEDIIAVPEASVVQRIYENVVLHTTKGDIHMRLFFK
EVPKTVENFCVHAKNGYYNGHIFHRVIKGFMVQTGDPTGTGTGGKSIWGS
DFKDEFVPSLKHDRPYTVSMANAGPNTNGSQFFITVLPTPWLDNKHTVFG
RVYRGMEVVLNICNSKANPKTDKPYDDIKIISIHLSNASFLDH
BO09152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3511-PB | 637 | CG3511-PB | 1..637 | 1..637 | 3336 | 100 | Plus |
CG3511-PA | 637 | CG3511-PA | 1..637 | 1..637 | 3336 | 100 | Plus |
Cypl-PA | 176 | CG13892-PA | 23..169 | 484..631 | 425 | 54.1 | Plus |
CG7747-PA | 517 | CG7747-PA | 282..429 | 484..632 | 382 | 49 | Plus |
CG11777-PA | 161 | CG11777-PA | 2..155 | 483..634 | 365 | 49.4 | Plus |