Clone BO09152 Report

Search the DGRC for BO09152

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG3511-RA
Protein status:BO09152.pep: validated full length
Sequenced Size:1945

Clone Sequence Records

BO09152.3prime Sequence

933 bp (823 high quality bases) assembled on 2006-01-11

> BO09152.3prime
ATGGTCTAGAAAGCTTGCATTACTTAAGTGTATCGAAATAATTTTAATGT
CGTCGTAGGGCTTGTCCGTCTTGGGATTCGCCTTGGAATTGCAAATGTTG
AGAACCACCTCCATGCCGCGGTAAACTCTTCCGAACACCGTGTGCTTGTT
GTCGAGCCAGGGCGTGGGCAGGACTGTGATAAAGAACTGGCTTCCATTCG
TGTTTGGACCCGCGTTAGCCATGCTGACCGTGTAGGGCCGATCGTGTTTC
AGGCTCGGCACGAACTCGTCTTTGAAATCGCTTCCCCAAATGGATTTGCC
GCCCGTGCCCGTTCCCGTGGGATCGCCAGTCTGCACCATGAAGCCCTTGA
TCACGCGATGGAATATGTGTCCATTGTAGTACCCATTTTTCGCATGAACA
CAGAAGTTCTCAACCGTCTTTGGAACCTCCTTGAAGAACAGCCTCATGTG
GATATCGCCTTTCGTGGTGTGGAGCACCACGTTCTCGTAGATGCGTTGCA
CGACTGAAGCTTCCGGCACGGCGATAATGTCCTCCTTCGAGGGCTTCTCG
TTGAAAATATCGCGGTCGACATCCTGCAGATCCGAGGGCAGTCTTCGGCT
GTACAAATAGAAGCGACTTTTTTTGTAAGCAGTGCAAAAGGCTGTTGGAT
CGTTAAGGATATTCTGGAGTGCTGGGTTTTCACTGGCCTCTTGCTCCATT
GTTATAGCAGCTTTTTGGCGCTTAATTCTTCCTTGAAACAAGGCCACCTG
GAGGGGCCGTATGTTGTCGGTTTTTCCTAGAATTGTGACGCAGCGATTCG
TTACCACATTGATCACCTTGATGCCCNACATCGTTGGGTAGAGCAAGAAG
TTGCCAGTGCTGTCGAAACAAATATTAAGGGTTGCATTCTGGGCAGTCTT
CTCCAGATCCCGCTCAGCCGCCATTCTTCTGCC

BO09152.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-PA 1914 CG3511-RA 997..1911 933..19 4506 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-RB 2044 CG3511-RB 1054..1968 933..19 4534 99.7 Minus
CG3511-RA 2202 CG3511-RA 1212..2126 933..19 4534 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24573180..24573484 927..623 1484 99 Minus
2R 25286936 2R 24573995..24574215 383..163 1105 100 Minus
2R 25286936 2R 24574283..24574427 163..19 725 100 Minus
2R 25286936 2R 24573814..24573939 505..380 630 100 Minus
2R 25286936 2R 24573552..24573670 622..504 595 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:24:15 has no hits.

BO09152.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:18 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-PA 997..1914 16..933 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:11 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-PA 997..1914 16..933 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:20 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 1212..2131 13..933 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:40:53 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 1212..2131 13..933 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:40:53 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24573180..24573484 623..927 99 -> Minus
2R 24573552..24573670 504..622 100 -> Minus
2R 24573816..24573936 383..503 100 -> Minus
2R 24573996..24574215 163..382 100 -> Minus
2R 24574284..24574432 13..162 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:20 Download gff for BO09152.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20461807..20461955 13..162 98   Minus
arm_2R 20461519..20461738 163..382 100 -> Minus
arm_2R 20461075..20461193 504..622 100 -> Minus
arm_2R 20461339..20461459 383..503 100 -> Minus
arm_2R 20460703..20461007 623..927 99 -> Minus

BO09152.5prime Sequence

940 bp (789 high quality bases) assembled on 2006-01-10

> BO09152.5prime
GAAGTTATCAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCA
GTGCCCCGGAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAA
AAAGAGGCGGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGA
GCAGAGCGCTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAAC
ACATCTACCTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTAC
ATGCACCGCGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGT
AGTGACCGCCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGC
TGGGCATCGAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAA
TCACTGACCACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGA
TCAGACAGCCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCA
TTCGATTGGGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGA
GATGCCGTACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACA
CATCTACGACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAAC
TTCACTCGGCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACC
GTCATTTCTGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAA
GTACGACTACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCCAGCTAG
ACACAAGCCTCTTTTGAGTTGCCAAACAGAAGACCCCAGTCACGGGTTTA
GCCGCCACGCCGGATGGAAAGCGTTTTGCCGCCATTTCCACAGATCGTAA
GGTCCGCGTCTTTCAGTCAACACGGGCAAGTTGATCCGGG

BO09152.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-PA 1914 CG3511-RA 1..798 17..814 3965 99.8 Plus
CG3511-PA 1914 CG3511-RA 803..901 819..917 470 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-RB 2044 CG3511-RB 58..982 17..940 4525 99.5 Plus
CG3511-RA 2202 CG3511-RA 216..1140 17..940 4525 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:49:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24572620..24572857 570..807 1160 99.2 Plus
2R 25286936 2R 24572124..24572328 185..389 1025 100 Plus
2R 25286936 2R 24572384..24572569 388..573 930 100 Plus
2R 25286936 2R 24571906..24572074 17..185 845 100 Plus
2R 25286936 2R 24572927..24573049 819..940 550 98.4 Plus
Blast to na_te.dros performed on 2015-02-12 18:49:57 has no hits.

BO09152.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:19 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:13 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-PA 1..925 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:26:41 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 216..1140 17..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:25:45 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 216..1140 17..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:25:45 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24571906..24572074 17..185 100 -> Plus
2R 24572125..24572328 186..389 100 -> Plus
2R 24572386..24572569 390..573 100 -> Plus
2R 24572624..24572856 574..806 99 -> Plus
2R 24572915..24573049 807..940 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:26:41 Download gff for BO09152.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20459429..20459597 17..185 100 -> Plus
arm_2R 20459648..20459851 186..389 100 -> Plus
arm_2R 20459909..20460092 390..573 100 -> Plus
arm_2R 20460147..20460379 574..806 99 -> Plus
arm_2R 20460438..20460572 807..940 97   Plus

BO09152.complete Sequence

1945 bp (1945 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631413

> BO09152.complete
GAAGTTATCAGTCGACATGAGTGATAAAACCAAGGAAGACCTGAAGCGCA
GTGCCCCGGAGGAGGAGAATGAGCCCCAGGAGGAATCTGTGTCATCCGAA
AAAGAGGCGGAAGGCGAGGAAGACGCCTGGATTGGACCCATGCCTTCAGA
GCAGAGCGCTCCCGCGCCCGCCAAGAAAAAGAAGGTCCTGCCCTATGAAC
ACATCTACCTGGAAAACCTGCCCAATGCTGAGAGCTACGAGAGGAGCTAC
ATGCACCGCGATGTGATCACTCATTTGGTGTGCACGAAGACGGATTTCGT
AGTGACCGCCAGTCTGGATGGACACATCAAATTCTGGAAGAAGGGCGAGC
TGGGCATCGAGTTCGTCAAGCACTTTCGCAGCCACCTAGTACCCATCAAA
TCACTGACCACCAACGACAGCGGCACGCTGCTCTGCTCGGCGGCCACGGA
TCAGACAGCCAAGGTCTTCGATGTTGTCAACTTCGACATGATCAACATCA
TTCGATTGGGCTACACACCGCAGTGCAGTGAGTGGATAAATGGGCCGGGA
GATGCCGTACAAGCACTGGCCATCTCGGATTCAGAGAGTAGCCGCATACA
CATCTACGACGGGCAAGGAGGCGGAGAAGCCCTTCACACCTTGGAGAAAC
TTCACTCGGCGCCCGTGGTGGCGATGTGCTTGAATGTGGCCATGGAGACC
GTCATTTCTGTCGATCGCAATGGCATTCTCGAATACTGGCAAAACTCGAA
GTACGACTACAAGTTTCCACAGCGTCTGGTGAATTTTGACTCCAAGCTAG
ACACAAGCCTCTTTGAGTTTGCCAAACAGAAGACCCAAGTCACGGGTTTA
GCCGCCACGCCGGATGGAAAGCGTTTTGCCGCCATTTCCACAGATCGTAA
GGTCCGCGTCTTTCAGTTCAACACGGGCAAGTTGATCCGGGTATTCGATG
AAGCTCTATCTACATACACCCAAATGCAGCAGACGAAGCACGCCCTGCCC
AACATGGAGTTTGGCAGAAGAATGGCGGCTGAGCGGGATCTGGAGAAGAC
TGCCCAGAATGCAACCCTTAATATTTTGTTCGACAGCACTGGCAACTTCT
TGCTCTACCCAACGATGTTGGGCATCAAGGTGATCAATGTGGTAACGAAT
CGCTGCGTCACAATTCTAGGAAAAACCGACAACATACGGCCCCTCCAGGT
GGCCTTGTTTCAAGGAAGAATTAAGCGCCAAAAAGCTGCTATAACAATGG
AGCAAGAGGCCAGTGAAAACCCAGCACTCCAGAATATCCTTAACGATCCA
ACAGCCTTTTGCACTGCTTACAAAAAAAGTCGCTTCTATTTGTACAGCCG
AAGACTGCCCTCGGATCTGCAGGATGTCGACCGCGATATTTTCAACGAGA
AGCCCTCGAAGGAGGACATTATCGCCGTGCCGGAAGCTTCAGTCGTGCAA
CGCATCTACGAGAACGTGGTGCTCCACACCACGAAAGGCGATATCCACAT
GAGGCTGTTCTTCAAGGAGGTTCCAAAGACGGTTGAGAACTTCTGTGTTC
ATGCGAAAAATGGGTACTACAATGGACACATATTCCATCGCGTGATCAAG
GGCTTCATGGTGCAGACTGGCGATCCCACGGGAACGGGCACGGGCGGCAA
ATCCATTTGGGGAAGCGATTTCAAAGACGAGTTCGTGCCGAGCCTGAAAC
ACGATCGGCCCTACACGGTCAGCATGGCTAACGCGGGTCCAAACACGAAT
GGAAGCCAGTTCTTTATCACAGTCCTGCCCACGCCCTGGCTCGACAACAA
GCACACGGTGTTCGGAAGAGTTTACCGCGGCATGGAGGTGGTTCTCAACA
TTTGCAATTCCAAGGCGAATCCCAAGACGGACAAGCCCTACGACGACATT
AAAATTATTTCGATACACTTAAGTAATGCAAGCTTTCTAGACCAT

BO09152.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-RB 1914 CG3511-PB 1..1911 17..1927 9555 100 Plus
CG3511-RA 1914 CG3511-PA 1..1911 17..1927 9555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-RB 2044 CG3511-RB 58..1968 17..1927 9555 100 Plus
CG3511-RA 2202 CG3511-RA 216..2126 17..1927 9555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24573180..24573484 1019..1323 1525 100 Plus
2R 25286936 2R 24572620..24572857 570..807 1175 99.6 Plus
2R 25286936 2R 24573995..24574215 1563..1783 1105 100 Plus
2R 25286936 2R 24572915..24573128 807..1020 1070 100 Plus
2R 25286936 2R 24572124..24572328 185..389 1025 100 Plus
2R 25286936 2R 24572384..24572569 388..573 930 100 Plus
2R 25286936 2R 24571906..24572074 17..185 845 100 Plus
2R 25286936 2R 24574283..24574427 1783..1927 725 100 Plus
2R 25286936 2R 24573814..24573939 1441..1566 630 100 Plus
2R 25286936 2R 24573552..24573670 1324..1442 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:40:12 has no hits.

BO09152.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:35 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 1..1914 17..1930 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:37 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 174..2089 17..1933 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:59:22 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 216..2126 17..1929 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:35 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 174..2089 17..1933 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:29:49 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
CG3511-RA 216..2126 17..1929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:29:49 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24573816..24573936 1443..1563 100 -> Plus
2R 24573996..24574215 1564..1783 100 -> Plus
2R 24574284..24574427 1784..1929 98   Plus
2R 24571906..24572074 17..185 100 -> Plus
2R 24572125..24572328 186..389 100 -> Plus
2R 24572386..24572569 390..573 100 -> Plus
2R 24572624..24572856 574..806 100 -> Plus
2R 24572915..24573128 807..1020 100 -> Plus
2R 24573182..24573484 1021..1323 100 -> Plus
2R 24573552..24573670 1324..1442 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:59:22 Download gff for BO09152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20461519..20461738 1564..1783 100 -> Plus
arm_2R 20461807..20461950 1784..1929 98   Plus
arm_2R 20461339..20461459 1443..1563 100 -> Plus
arm_2R 20459429..20459597 17..185 100 -> Plus
arm_2R 20459648..20459851 186..389 100 -> Plus
arm_2R 20459909..20460092 390..573 100 -> Plus
arm_2R 20460147..20460379 574..806 100 -> Plus
arm_2R 20460438..20460651 807..1020 100 -> Plus
arm_2R 20460705..20461007 1021..1323 100 -> Plus
arm_2R 20461075..20461193 1324..1442 100 -> Plus

BO09152.pep Sequence

Translation from 16 to 1945

> BO09152.pep
MSDKTKEDLKRSAPEEENEPQEESVSSEKEAEGEEDAWIGPMPSEQSAPA
PAKKKKVLPYEHIYLENLPNAESYERSYMHRDVITHLVCTKTDFVVTASL
DGHIKFWKKGELGIEFVKHFRSHLVPIKSLTTNDSGTLLCSAATDQTAKV
FDVVNFDMINIIRLGYTPQCSEWINGPGDAVQALAISDSESSRIHIYDGQ
GGGEALHTLEKLHSAPVVAMCLNVAMETVISVDRNGILEYWQNSKYDYKF
PQRLVNFDSKLDTSLFEFAKQKTQVTGLAATPDGKRFAAISTDRKVRVFQ
FNTGKLIRVFDEALSTYTQMQQTKHALPNMEFGRRMAAERDLEKTAQNAT
LNILFDSTGNFLLYPTMLGIKVINVVTNRCVTILGKTDNIRPLQVALFQG
RIKRQKAAITMEQEASENPALQNILNDPTAFCTAYKKSRFYLYSRRLPSD
LQDVDRDIFNEKPSKEDIIAVPEASVVQRIYENVVLHTTKGDIHMRLFFK
EVPKTVENFCVHAKNGYYNGHIFHRVIKGFMVQTGDPTGTGTGGKSIWGS
DFKDEFVPSLKHDRPYTVSMANAGPNTNGSQFFITVLPTPWLDNKHTVFG
RVYRGMEVVLNICNSKANPKTDKPYDDIKIISIHLSNASFLDH

BO09152.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3511-PB 637 CG3511-PB 1..637 1..637 3336 100 Plus
CG3511-PA 637 CG3511-PA 1..637 1..637 3336 100 Plus
Cypl-PA 176 CG13892-PA 23..169 484..631 425 54.1 Plus
CG7747-PA 517 CG7747-PA 282..429 484..632 382 49 Plus
CG11777-PA 161 CG11777-PA 2..155 483..634 365 49.4 Plus