Clone Sequence Records
BO09153.3prime Sequence
895 bp (798 high quality bases) assembled on 2006-01-11
> BO09153.3prime
ATGGTCTAGAAAGCTTGCGGAGCTGTCCGGATAGACGGTTCCTATCAGGC
GCATACCGTTCCATTTCCATTCGTGGGAGACAATCGTGGCGGAGGCATGA
CCCAACTGGATGTGGCAGGGTTCCTCCTTCGCCGTGGCCAGGAAGCAGGC
GGTGTACAGGGCCATGTCCAGTTCGGGCGAGATGCCCACAAAGAAGCCGT
TGACTGGCTTATTGATGTTGTGAAACGTGTAGCGAACGCTGAGAACCATT
TGGTTGTGCTTTCCCATTTCCTTGTGGTTCAGCCAGCCCTTGTAGTCCAC
ATTGCCACGTTGCTCCTGATCTGCAAAGTACAGCCAGTTATGCAAGCCCA
GGACCTTCTGGTCCCGAATCTCCGCCATGAAGACGTGCTCGAAACTGGAA
CTGCCCACAATGCCACGACCTCTGGAGTAGGGAGTGAACCACAGCTCCTG
CAGCAGACGCAGCTGATCGTCATATTCTACGCTCACAATATCCTTGTGTA
CCAAAAAACGCATGGTCAGCTTCATCACACGCGTACCCATCACGGCCCTA
AGGAAATCATATTGCTCCTGGACGTGCTCCGGCGTTGGATGCTCCTGCAC
AGCCACGTCCAACTCGTAGTTGTCAAAGAGCCTCATTAGCAGAGCGGTGG
TGGAGTTAGCATCCCTGGCCAGCAGATCCTGGTGCAATTCAAAGAGGTTT
CTAGGGGCGCGATCGTCATGAGCACCTGAAGTGGTCTTCCCCTGGAGATT
CACCTTGTAGAGGTATGGACTGACCTCGGTCTCCTCCGCGTACAGATTCT
TCGAGAGGGTCAAGACGTCATCCGGCGTTTTGGGCAGCGGCTTGCTGTGG
AAGTACTCGTAGAAATGCCAGCTCAAAATGCCAATGGTGATCAGC
BO09153.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 969 | CG3303-RA | 90..966 | 895..19 | 4360 | 99.8 | Minus |
CG31292-PA | 291 | CG31292-RA | 90..287 | 895..698 | 965 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 285..1161 | 895..19 | 4370 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909642..15909883 | 260..19 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 15909347..15909580 | 492..259 | 1170 | 100 | Minus |
3R | 32079331 | 3R | 15909085..15909290 | 697..492 | 1030 | 100 | Minus |
3R | 32079331 | 3R | 15908778..15908938 | 858..698 | 805 | 100 | Minus |
3R | 32079331 | 3R | 15906586..15906746 | 858..698 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:02:40 has no hits.
BO09153.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:20 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 90..969 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:14 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 90..969 | 18..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:09 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 249..1125 | 19..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:18 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 285..1161 | 19..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:18 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15908682..15908719 | 858..895 | 97 | -> | Minus |
3R | 15908779..15908938 | 698..857 | 100 | -> | Minus |
3R | 15909085..15909290 | 492..697 | 100 | -> | Minus |
3R | 15909348..15909580 | 259..491 | 100 | -> | Minus |
3R | 15909644..15909883 | 19..258 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:09 Download gff for
BO09153.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734404..11734441 | 858..895 | 97 | -> | Minus |
arm_3R | 11734501..11734660 | 698..857 | 100 | -> | Minus |
arm_3R | 11734807..11735012 | 492..697 | 100 | -> | Minus |
arm_3R | 11735070..11735302 | 259..491 | 100 | -> | Minus |
arm_3R | 11735366..11735605 | 19..258 | 100 | | Minus |
BO09153.5prime Sequence
877 bp (835 high quality bases) assembled on 2006-01-10
> BO09153.5prime
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAG
BO09153.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 969 | CG3303-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
CG31292-PA | 291 | CG31292-RA | 1..287 | 17..303 | 1435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 196..1056 | 17..877 | 4305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:54:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909347..15909580 | 509..742 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 15909085..15909290 | 304..509 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 15906586..15906746 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15908778..15908938 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15909642..15909778 | 741..877 | 685 | 100 | Plus |
3R | 32079331 | 3R | 15906401..15906527 | 17..143 | 635 | 100 | Plus |
3R | 32079331 | 3R | 15908593..15908719 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 09:54:25 has no hits.
BO09153.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:21 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:16 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:32 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1020 | 2..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:44 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 184..1056 | 2..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:44 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15908581..15908719 | 2..143 | 96 | -> | Plus |
3R | 15908779..15908938 | 144..303 | 100 | -> | Plus |
3R | 15909085..15909290 | 304..509 | 100 | -> | Plus |
3R | 15909348..15909580 | 510..742 | 100 | -> | Plus |
3R | 15909644..15909778 | 743..877 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:32 Download gff for
BO09153.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734303..11734441 | 2..143 | 96 | -> | Plus |
arm_3R | 11734501..11734660 | 144..303 | 100 | -> | Plus |
arm_3R | 11734807..11735012 | 304..509 | 100 | -> | Plus |
arm_3R | 11735070..11735302 | 510..742 | 100 | -> | Plus |
arm_3R | 11735366..11735500 | 743..877 | 100 | | Plus |
BO09153.complete Sequence
1000 bp (1000 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631414
> BO09153.complete
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCAGTTGGG
TCATGCCTCCGCCACGATTGTCTCCCACGAATGGAAATGGAACGGTATGC
GCCTGATAGGAACCGTCTATCCGGACAGCTCCGCAAGCTTTCTAGACCAT
BO09153.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 969 | CG3303-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-RA | 1645 | CG3303-RA | 196..1161 | 17..982 | 4830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15909642..15909883 | 741..982 | 1210 | 100 | Plus |
3R | 32079331 | 3R | 15909347..15909580 | 509..742 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 15909085..15909290 | 304..509 | 1030 | 100 | Plus |
3R | 32079331 | 3R | 15906586..15906746 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15908778..15908938 | 143..303 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15906401..15906527 | 17..143 | 635 | 100 | Plus |
3R | 32079331 | 3R | 15908593..15908719 | 17..143 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:51:42 has no hits.
BO09153.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:02 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:53 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1125 | 2..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:57 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 160..1125 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:03 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 148..1125 | 2..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:42 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3303-RA | 196..1161 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:42 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15908593..15908719 | 17..143 | 100 | -> | Plus |
3R | 15908779..15908938 | 144..303 | 100 | -> | Plus |
3R | 15909085..15909290 | 304..509 | 100 | -> | Plus |
3R | 15909348..15909580 | 510..742 | 100 | -> | Plus |
3R | 15909644..15909883 | 743..984 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:57 Download gff for
BO09153.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11734315..11734441 | 17..143 | 100 | -> | Plus |
arm_3R | 11734501..11734660 | 144..303 | 100 | -> | Plus |
arm_3R | 11734807..11735012 | 304..509 | 100 | -> | Plus |
arm_3R | 11735070..11735302 | 510..742 | 100 | -> | Plus |
arm_3R | 11735366..11735605 | 743..984 | 99 | | Plus |
BO09153.pep Sequence
Translation from 16 to 1000
> BO09153.pep
MDAVQQQTNSTSNIDSAKCQKLKRFVIVGLLITIGILSWHFYEYFHSKPL
PKTPDDVLTLSKNLYAEETEVSPYLYKVNLQGKTTSGAHDDRAPRNLFEL
HQDLLARDANSTTALLMRLFDNYELDVAVQEHPTPEHVQEQYDFLRAVMG
TRVMKLTMRFLVHKDIVSVEYDDQLRLLQELWFTPYSRGRGIVGSSSFEH
VFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGKHNQMVLSV
RYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHASAT
IVSHEWKWNGMRLIGTVYPDSSASFLDH
BO09153.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3303-PA | 322 | CG3303-PA | 1..322 | 1..322 | 1711 | 100 | Plus |
CG2145-PB | 592 | CG2145-PB | 329..591 | 53..320 | 561 | 42.8 | Plus |
CG2145-PA | 592 | CG2145-PA | 329..591 | 53..320 | 561 | 42.8 | Plus |