Clone BO09153 Report

Search the DGRC for BO09153

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG3303-RA
Protein status:BO09153.pep: validated full length
Sequenced Size:1000

Clone Sequence Records

BO09153.3prime Sequence

895 bp (798 high quality bases) assembled on 2006-01-11

> BO09153.3prime
ATGGTCTAGAAAGCTTGCGGAGCTGTCCGGATAGACGGTTCCTATCAGGC
GCATACCGTTCCATTTCCATTCGTGGGAGACAATCGTGGCGGAGGCATGA
CCCAACTGGATGTGGCAGGGTTCCTCCTTCGCCGTGGCCAGGAAGCAGGC
GGTGTACAGGGCCATGTCCAGTTCGGGCGAGATGCCCACAAAGAAGCCGT
TGACTGGCTTATTGATGTTGTGAAACGTGTAGCGAACGCTGAGAACCATT
TGGTTGTGCTTTCCCATTTCCTTGTGGTTCAGCCAGCCCTTGTAGTCCAC
ATTGCCACGTTGCTCCTGATCTGCAAAGTACAGCCAGTTATGCAAGCCCA
GGACCTTCTGGTCCCGAATCTCCGCCATGAAGACGTGCTCGAAACTGGAA
CTGCCCACAATGCCACGACCTCTGGAGTAGGGAGTGAACCACAGCTCCTG
CAGCAGACGCAGCTGATCGTCATATTCTACGCTCACAATATCCTTGTGTA
CCAAAAAACGCATGGTCAGCTTCATCACACGCGTACCCATCACGGCCCTA
AGGAAATCATATTGCTCCTGGACGTGCTCCGGCGTTGGATGCTCCTGCAC
AGCCACGTCCAACTCGTAGTTGTCAAAGAGCCTCATTAGCAGAGCGGTGG
TGGAGTTAGCATCCCTGGCCAGCAGATCCTGGTGCAATTCAAAGAGGTTT
CTAGGGGCGCGATCGTCATGAGCACCTGAAGTGGTCTTCCCCTGGAGATT
CACCTTGTAGAGGTATGGACTGACCTCGGTCTCCTCCGCGTACAGATTCT
TCGAGAGGGTCAAGACGTCATCCGGCGTTTTGGGCAGCGGCTTGCTGTGG
AAGTACTCGTAGAAATGCCAGCTCAAAATGCCAATGGTGATCAGC

BO09153.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 969 CG3303-RA 90..966 895..19 4360 99.8 Minus
CG31292-PA 291 CG31292-RA 90..287 895..698 965 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 285..1161 895..19 4370 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909642..15909883 260..19 1210 100 Minus
3R 32079331 3R 15909347..15909580 492..259 1170 100 Minus
3R 32079331 3R 15909085..15909290 697..492 1030 100 Minus
3R 32079331 3R 15908778..15908938 858..698 805 100 Minus
3R 32079331 3R 15906586..15906746 858..698 805 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:02:40 has no hits.

BO09153.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:20 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 90..969 18..895 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:14 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 90..969 18..895 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:28:09 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 249..1125 19..895 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:18:18 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 285..1161 19..895 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:18:18 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15908682..15908719 858..895 97 -> Minus
3R 15908779..15908938 698..857 100 -> Minus
3R 15909085..15909290 492..697 100 -> Minus
3R 15909348..15909580 259..491 100 -> Minus
3R 15909644..15909883 19..258 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:28:09 Download gff for BO09153.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734404..11734441 858..895 97 -> Minus
arm_3R 11734501..11734660 698..857 100 -> Minus
arm_3R 11734807..11735012 492..697 100 -> Minus
arm_3R 11735070..11735302 259..491 100 -> Minus
arm_3R 11735366..11735605 19..258 100   Minus

BO09153.5prime Sequence

877 bp (835 high quality bases) assembled on 2006-01-10

> BO09153.5prime
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAG

BO09153.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 969 CG3303-RA 1..861 17..877 4305 100 Plus
CG31292-PA 291 CG31292-RA 1..287 17..303 1435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:54:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 196..1056 17..877 4305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909347..15909580 509..742 1170 100 Plus
3R 32079331 3R 15909085..15909290 304..509 1030 100 Plus
3R 32079331 3R 15906586..15906746 143..303 805 100 Plus
3R 32079331 3R 15908778..15908938 143..303 805 100 Plus
3R 32079331 3R 15909642..15909778 741..877 685 100 Plus
3R 32079331 3R 15906401..15906527 17..143 635 100 Plus
3R 32079331 3R 15908593..15908719 17..143 635 100 Plus
Blast to na_te.dros performed on 2015-02-09 09:54:25 has no hits.

BO09153.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:21 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:16 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-PA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:24:32 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1020 2..877 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:53:44 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 184..1056 2..877 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:53:44 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15908581..15908719 2..143 96 -> Plus
3R 15908779..15908938 144..303 100 -> Plus
3R 15909085..15909290 304..509 100 -> Plus
3R 15909348..15909580 510..742 100 -> Plus
3R 15909644..15909778 743..877 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:24:32 Download gff for BO09153.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734303..11734441 2..143 96 -> Plus
arm_3R 11734501..11734660 144..303 100 -> Plus
arm_3R 11734807..11735012 304..509 100 -> Plus
arm_3R 11735070..11735302 510..742 100 -> Plus
arm_3R 11735366..11735500 743..877 100   Plus

BO09153.complete Sequence

1000 bp (1000 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631414

> BO09153.complete
GAAGTTATCAGTCGACATGGACGCAGTGCAGCAGCAAACAAACAGCACTA
GCAACATCGACAGCGCCAAATGCCAGAAGCTAAAGAGATTTGTGATCGTA
GGCTTGCTGATCACCATTGGCATTTTGAGCTGGCACTTCTACGAGTACTT
CCACAGCAAGCCGCTGCCCAAAACGCCGGATGACGTCTTGACCCTCTCGA
AGAATCTGTACGCGGAGGAGACCGAGGTCAGTCCATACCTCTACAAGGTG
AATCTCCAGGGGAAGACCACTTCAGGTGCTCATGACGATCGCGCCCCTAG
AAACCTCTTTGAATTGCACCAGGATCTGCTGGCCAGGGATGCTAACTCCA
CCACCGCTCTGCTAATGAGGCTCTTTGACAACTACGAGTTGGACGTGGCT
GTGCAGGAGCATCCAACGCCGGAGCACGTCCAGGAGCAATATGATTTCCT
TAGGGCCGTGATGGGTACGCGTGTGATGAAGCTGACCATGCGTTTTTTGG
TACACAAGGATATTGTGAGCGTAGAATATGACGATCAGCTGCGTCTGCTG
CAGGAGCTGTGGTTCACTCCCTACTCCAGAGGTCGTGGCATTGTGGGCAG
TTCCAGTTTCGAGCACGTCTTCATGGCGGAGATTCGGGACCAGAAGGTCC
TGGGCTTGCATAACTGGCTGTACTTTGCAGATCAGGAGCAACGTGGCAAT
GTGGACTACAAGGGCTGGCTGAACCACAAGGAAATGGGAAAGCACAACCA
AATGGTTCTCAGCGTTCGCTACACGTTTCACAACATCAATAAGCCAGTCA
ACGGCTTCTTTGTGGGCATCTCGCCCGAACTGGACATGGCCCTGTACACC
GCCTGCTTCCTGGCCACGGCGAAGGAGGAACCCTGCCACATCCAGTTGGG
TCATGCCTCCGCCACGATTGTCTCCCACGAATGGAAATGGAACGGTATGC
GCCTGATAGGAACCGTCTATCCGGACAGCTCCGCAAGCTTTCTAGACCAT

BO09153.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:51:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 969 CG3303-PA 1..966 17..982 4830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:51:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-RA 1645 CG3303-RA 196..1161 17..982 4830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15909642..15909883 741..982 1210 100 Plus
3R 32079331 3R 15909347..15909580 509..742 1170 100 Plus
3R 32079331 3R 15909085..15909290 304..509 1030 100 Plus
3R 32079331 3R 15906586..15906746 143..303 805 100 Plus
3R 32079331 3R 15908778..15908938 143..303 805 100 Plus
3R 32079331 3R 15906401..15906527 17..143 635 100 Plus
3R 32079331 3R 15908593..15908719 17..143 635 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:51:42 has no hits.

BO09153.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:02 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 1..969 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:53 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1125 2..982 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:57 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 160..1125 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:03 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 148..1125 2..982 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:09:42 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
CG3303-RA 196..1161 17..984 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:09:42 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15908593..15908719 17..143 100 -> Plus
3R 15908779..15908938 144..303 100 -> Plus
3R 15909085..15909290 304..509 100 -> Plus
3R 15909348..15909580 510..742 100 -> Plus
3R 15909644..15909883 743..984 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:57 Download gff for BO09153.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11734315..11734441 17..143 100 -> Plus
arm_3R 11734501..11734660 144..303 100 -> Plus
arm_3R 11734807..11735012 304..509 100 -> Plus
arm_3R 11735070..11735302 510..742 100 -> Plus
arm_3R 11735366..11735605 743..984 99   Plus

BO09153.pep Sequence

Translation from 16 to 1000

> BO09153.pep
MDAVQQQTNSTSNIDSAKCQKLKRFVIVGLLITIGILSWHFYEYFHSKPL
PKTPDDVLTLSKNLYAEETEVSPYLYKVNLQGKTTSGAHDDRAPRNLFEL
HQDLLARDANSTTALLMRLFDNYELDVAVQEHPTPEHVQEQYDFLRAVMG
TRVMKLTMRFLVHKDIVSVEYDDQLRLLQELWFTPYSRGRGIVGSSSFEH
VFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNHKEMGKHNQMVLSV
RYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHASAT
IVSHEWKWNGMRLIGTVYPDSSASFLDH

BO09153.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3303-PA 322 CG3303-PA 1..322 1..322 1711 100 Plus
CG2145-PB 592 CG2145-PB 329..591 53..320 561 42.8 Plus
CG2145-PA 592 CG2145-PA 329..591 53..320 561 42.8 Plus