Clone Sequence Records
BO09155.3prime Sequence
887 bp (808 high quality bases) assembled on 2006-01-11
> BO09155.3prime
ATGGTCTAGAAAGCTTGCCGGTGTATGTGTATCAAAGTACTTGTTGGAGC
TTTCCTGAAAGCGATCGCTACGCGCCAATTCGTTGCGGAAGTAGGAGATG
GTCCGCTGAAGTCCAGTCTCTAGGGGAACCTTTGGCTCCCAATGGAGCAA
CTGGCGGGCTCGAGTTATGTCCGGTTTTCTGCGCTGCGGATCATCTTCCA
TGGCCTTCGATTGCTTTATCACACTGGGCCCGCCGACCAGTTTCTTGATG
ATCTCGGCAAATTCGCCGATTGTCTGCTCCACAGGATTGCCTAAATTCAC
CGGCTGTGTGTAGTTGGATGCCATTAGGGCTATCATTCCGTCCACCAGAT
CCGAAACATACTGAAAGGAGCGCGTTTGTTTGCCATTTCCATACACCGTA
ATGGTTTCATTCCTCAGCGCCTGAAGTATAAAGTTTGACACCACTCGTCC
ATCGTTCATATGCATTCTCGGTCCATAAGTGTTAAAGATGCGCGCCACTC
GGACTTGCACTTTCTCCTGTTTGGCATACGCATAGCTCAGCGTCTCGGAG
ACACGCTTTCCCTCGTCATAACAGGCTCTCGGTCCAATAGGGTTTACATG
TCCCCAGTATGTTTCTGGCTGCGGATGCACTGTGGGATCGCCGTACACTT
CCGAAGTGCTAGCTATCAAAACCTTGGCCATCACGCGCTTGGCCAGACCC
AGTACATTGATCGTGCCCATGGTGTTGGTCTTGATGGTCTTCACCGGATT
GTACATGTAATGCGGTGGCGAGGCTGGCGATGCCAAGTGGTAGATCTCAT
CGATCTCGATGAAAAGCGGATTCACTATGTCGTGGTGGATGAGCTCGAAG
TTCTCGTGCCCCAGCCAGTGCTCGACATTTCGCTTGC
BO09155.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-PA | 1326 | CG7979-RA | 455..1323 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-RA | 2093 | CG7979-RA | 573..1441 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8182216..8182717 | 520..19 | 2510 | 100 | Minus |
3L | 28110227 | 3L | 8181495..8181685 | 887..697 | 955 | 100 | Minus |
3L | 28110227 | 3L | 8181750..8181933 | 699..516 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:10:15 has no hits.
BO09155.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:24 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-PA | 455..1326 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:20 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-PA | 455..1326 | 18..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:20:13 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 573..1441 | 19..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:43 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 573..1441 | 19..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:43 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8181495..8181683 | 699..887 | 100 | -> | Minus |
3L | 8181751..8181932 | 517..698 | 100 | -> | Minus |
3L | 8182220..8182717 | 19..516 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:20:13 Download gff for
BO09155.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8174595..8174783 | 699..887 | 100 | -> | Minus |
arm_3L | 8174851..8175032 | 517..698 | 100 | -> | Minus |
arm_3L | 8175320..8175817 | 19..516 | 100 | | Minus |
BO09155.5prime Sequence
917 bp (907 high quality bases) assembled on 2006-01-10
> BO09155.5prime
GAAGTTATCAGTCGACATGACTGCCACCAAAAAGCGTCTGAAGATCGTTG
CAGCCATCTCGCTGCTCCTCCTGCTCCTGGTCTACCTTTACCGAATGGCC
AGCTTCTGCCCAAGCGGAAAGGTCGCCGTTTCCGTTCCCGGCGTCGAGGA
GGTTCAGGCCAAATGGCCGCCCACGGAAAGTCCGCTACAAAGGAGCCTTC
AGATGGCGTACGAGGAGCAGAGCTCTCTTATTCGAGAACAAAAGGCCGAA
CTCCAGCGCACAAGGGAGAATTTGGCCAGATTGGAGGAACAAGTTCGTAG
CCTCCAGACCAGCACACCGCGCAAGTATCCGAAGGTTAAATACCTGAACT
ATAAGAATCGCAAACGCATACTAATTACCGGAGGAGCTGGCTTCGTGGGC
TCCCACTTGGTCGACGATCTGATGGTCCAGGGGCACGAGGTCATCGTGGT
GGACAATTTCTTTACGGGACGCAAGCGAAATGTCGAGCACTGGCTGGGGC
ACGAGAACTTCGAGCTCATCCACCACGACATAGTGAATCCGCTTTTCATC
GAGATCGATGAGATCTACCACTTGGCATCGCCAGCCTCGCCACCGCATTA
CATGTACAATCCGGTGAAGACCATCAAGACCAACACCATGGGCACGATCA
ATGTACTGGGTCTGGCCAAGCGCGTGATGGCCAAGGTTTTGATAGCTAGC
ACTTCGGAAGTGTACGGCGATCCCACAGTGCATCCGCAGCCAGAAACATA
CTGGGGACATGTAAACCCTATTGGACCGAGAGCCTGTTATGACGAGGGAA
AGCGTGTCTCCGAGACGCTGAGCTATGCGTATGCCAAACAGGAGAAAGTG
CAAGTCCGAGTGGCGCGCATCTTTACACTTATGGACCGAGAATGCATATG
AACGATGGACGAGTGGT
BO09155.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-PA | 1326 | CG7979-RA | 1..859 | 17..875 | 4295 | 100 | Plus |
CG7979-PA | 1326 | CG7979-RA | 860..902 | 875..917 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:45:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-RA | 2093 | CG7979-RA | 119..1020 | 17..917 | 4485 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8181041..8181685 | 17..661 | 3225 | 100 | Plus |
3L | 28110227 | 3L | 8181750..8181933 | 659..842 | 920 | 100 | Plus |
3L | 28110227 | 3L | 8182216..8182296 | 838..917 | 355 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:45:37 has no hits.
BO09155.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:25 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:21 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-PA | 1..902 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:21 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 109..1020 | 7..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:10:47 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 109..1020 | 7..917 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:10:47 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8181031..8181683 | 7..659 | 99 | -> | Plus |
3L | 8181751..8181932 | 660..841 | 100 | -> | Plus |
3L | 8182220..8182296 | 842..917 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:21 Download gff for
BO09155.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8174131..8174783 | 7..659 | 99 | -> | Plus |
arm_3L | 8174851..8175032 | 660..841 | 100 | -> | Plus |
arm_3L | 8175320..8175396 | 842..917 | 98 | | Plus |
BO09155.complete Sequence
1357 bp (1357 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631415
> BO09155.complete
GAAGTTATCAGTCGACATGACTGCCACCAAAAAGCGTCTGAAGATCGTTG
CAGCCATCTCGCTGCTCCTCCTGCTCCTGGTCTACCTTTACCGAATGGCC
AGCTTCTGCCCAAGCGGAAAGGTCGCCGTTTCCGTTCCCGGCGTCGAGGA
GGTTCAGGCCAAATGGCCGCCCACGGAAAGTCCGCTACAAAGGAGCCTTC
AGATGGCGTACGAGGAGCAGAGCTCTCTTATTCGAGAACAAAAGGCCGAA
CTCCAGCGCACAAGGGAGAATTTGGCCAGATTGGAGGAACAAGTTCGTAG
CCTCCAGACCAGCACACCGCGCAAGTATCCGAAGGTTAAATACCTGAACT
ATAAGAATCGCAAACGCATACTAATTACCGGAGGAGCTGGCTTCGTGGGC
TCCCACTTGGTCGACGATCTGATGGTCCAGGGGCACGAGGTCATCGTGGT
GGACAATTTCTTTACGGGACGCAAGCGAAATGTCGAGCACTGGCTGGGGC
ACGAGAACTTCGAGCTCATCCACCACGACATAGTGAATCCGCTTTTCATC
GAGATCGATGAGATCTACCACTTGGCATCGCCAGCCTCGCCACCGCATTA
CATGTACAATCCGGTGAAGACCATCAAGACCAACACCATGGGCACGATCA
ATGTACTGGGTCTGGCCAAGCGCGTGATGGCCAAGGTTTTGATAGCTAGC
ACTTCGGAAGTGTACGGCGATCCCACAGTGCATCCGCAGCCAGAAACATA
CTGGGGACATGTAAACCCTATTGGACCGAGAGCCTGTTATGACGAGGGAA
AGCGTGTCTCCGAGACGCTGAGCTATGCGTATGCCAAACAGGAGAAAGTG
CAAGTCCGAGTGGCGCGCATCTTTAACACTTATGGACCGAGAATGCATAT
GAACGATGGACGAGTGGTGTCAAACTTTATACTTCAGGCGCTGAGGAATG
AAACCATTACGGTGTATGGAAATGGCAAACAAACGCGCTCCTTTCAGTAT
GTTTCGGATCTGGTGGACGGAATGATAGCCCTAATGGCATCCAACTACAC
ACAGCCGGTGAATTTAGGCAATCCTGTGGAGCAGACAATCGGCGAATTTG
CCGAGATCATCAAGAAACTGGTCGGCGGGCCCAGTGTGATAAAGCAATCG
AAGGCCATGGAAGATGATCCGCAGCGCAGAAAACCGGACATAACTCGAGC
CCGCCAGTTGCTCCATTGGGAGCCAAAGGTTCCCCTAGAGACTGGACTTC
AGCGGACCATCTCCTACTTCCGCAACGAATTGGCGCGTAGCGATCGCTTT
CAGGAAAGCTCCAACAAGTACTTTGATACACATACACCGGCAAGCTTTCT
AGACCAT
BO09155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-RA | 1326 | CG7979-PA | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-RA | 2093 | CG7979-RA | 119..1441 | 17..1339 | 6615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8181041..8181685 | 17..661 | 3225 | 100 | Plus |
3L | 28110227 | 3L | 8182216..8182717 | 838..1339 | 2510 | 100 | Plus |
3L | 28110227 | 3L | 8181750..8181933 | 659..842 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:50:13 has no hits.
BO09155.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:07 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 1..1326 | 17..1340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:55 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 109..1441 | 7..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:12 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 119..1441 | 17..1341 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:07 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 109..1441 | 7..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:57 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7979-RA | 119..1441 | 17..1341 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:57 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8181041..8181683 | 17..659 | 100 | -> | Plus |
3L | 8181751..8181932 | 660..841 | 100 | -> | Plus |
3L | 8182220..8182717 | 842..1341 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:12 Download gff for
BO09155.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8174141..8174783 | 17..659 | 100 | -> | Plus |
arm_3L | 8174851..8175032 | 660..841 | 100 | -> | Plus |
arm_3L | 8175320..8175817 | 842..1341 | 99 | | Plus |
BO09155.pep Sequence
Translation from 16 to 1357
> BO09155.pep
MTATKKRLKIVAAISLLLLLLVYLYRMASFCPSGKVAVSVPGVEEVQAKW
PPTESPLQRSLQMAYEEQSSLIREQKAELQRTRENLARLEEQVRSLQTST
PRKYPKVKYLNYKNRKRILITGGAGFVGSHLVDDLMVQGHEVIVVDNFFT
GRKRNVEHWLGHENFELIHHDIVNPLFIEIDEIYHLASPASPPHYMYNPV
KTIKTNTMGTINVLGLAKRVMAKVLIASTSEVYGDPTVHPQPETYWGHVN
PIGPRACYDEGKRVSETLSYAYAKQEKVQVRVARIFNTYGPRMHMNDGRV
VSNFILQALRNETITVYGNGKQTRSFQYVSDLVDGMIALMASNYTQPVNL
GNPVEQTIGEFAEIIKKLVGGPSVIKQSKAMEDDPQRRKPDITRARQLLH
WEPKVPLETGLQRTISYFRNELARSDRFQESSNKYFDTHTPASFLDH
BO09155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7979-PA | 441 | CG7979-PA | 1..441 | 1..441 | 2288 | 100 | Plus |