Clone Sequence Records
BO09163.3prime Sequence
926 bp (802 high quality bases) assembled on 2006-01-11
> BO09163.3prime
ATGGTCTAGAAAGCTTGCCACATTTCTGGTTATTTTACTAAAGTACATGG
GTCCAAAGTTGGCCGGCAGGTAGGGCACCACCATTTGTCCATACTTGAGT
CCCTTTGGGTGCTCGAACTTGAAGACATCGCTGAAGAGCGCCGTGTGGCG
ACTCAGATCCTTGATGGTAGTTGTGATGCCGTACTCCGTGAAGACCTTTT
GCAGAGCCATGTGGACGACACCATCGTTCTGGATGGGCGACAGCGAGCAG
GTGGAGTAGACCAAACTGCCGCCTGGTCGCAGGAGACGCAAGCAGTTGGC
CAGGATGCCTGCCTGGAGCTCTGGTATCCGCAGGCGCTCCTTTATGCGCG
TCGGCTTGAAAATATTGTTGTCCTGCTCGTTGAGCACATGGCGATCCGTG
GTGCAGGGCACGTCGACCAGGATCTTGTCGAACTGCTCGTACTGGTCCAG
ATTGCGGGCGTCACTCTGGCTGAGGATGAGGCGCTTTCCAGCCCAGCGCT
CCTTGTAGTCGAACAGGTACTCCTGCATCACTTTGCGCAGCTTGTTTAGG
CGGGATTCTTGGATGTCATTGCAGACCAGGTGGTCCAAGTGCAGCGTCTG
CAGCATAAGCAGCGATTTGCCGCCGGGAGAGGCACAGGCATCGAGCACAC
GCTCGCCAGGCTTCACCTGCAGGAAGAGAGGCGGCAAAGTCGAGGCACCA
TCCATCATAAAGTGGGAGAGCACACCGGTCATGCACTTCTTGGGTCCCTT
GAAGTCCGAGCAGTTGCCCATTTCATATGTGTACAGGGACAGATGCTCGG
GGTAGTGAAAGGAAGGCTCCGGTTCAATGGCGAGCGGGAAGTCGGCGCTG
GTTTGGTAGTACTTGTAGTGCTCCGACTCTGCCACCCAGTCCTCCATGCC
CTTGATGCTGTGGGCAGGCATGTATT
BO09163.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 1512 | CG4749-RA | 602..1509 | 926..19 | 4540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 645..1552 | 926..19 | 4540 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1148466..1149373 | 926..19 | 4540 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:06:28 has no hits.
BO09163.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:37 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 602..1512 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:38 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 602..1512 | 16..926 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:44:09 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 645..1552 | 19..926 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:58:21 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 645..1552 | 19..926 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:58:21 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1148466..1149373 | 19..926 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:44:09 Download gff for
BO09163.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1148466..1149373 | 19..926 | 100 | | Minus |
BO09163.5prime Sequence
906 bp (791 high quality bases) assembled on 2006-01-10
> BO09163.5prime
GAAGTTATCAGTCGACATGTTGAAAGCACGGAACGTTTGTTTGCTGTCCA
GGAGGTGGAAGAGTGGCGCCAAGAAGCGATGGAATGTCCTGCAGAACAAG
AAGAACAACTGTGACCGAGCGCTGGAGAACTTCGATGACTTCTACGGAAG
TGTCTACGGCACCCGGTGGAAGAACATGCGGGCGGCGCTTCTCACGAGGC
ACAAGTATGTCGCCCTGGTCAACAATTTCGGGGACACGGAGCAGACGTGC
GCCATGCTGGAGTCAGATGGAGCCATCAACATGAAGTCGCTTATTAACCT
GGCGCAGGATCGGGTAAAGGACAGCACGGAGACGGTGCCGGAACAAGGCA
AATCACGTCATGAAATTGAAAGCAAACTGGATGCACTGCTGCGGAAACAG
CAGGAGCGCGAGGTGGCCTCCATATACCCGAGCTCGCCAGAAGATGGTTC
ATCGGCGCCACTGCCGCTGGAACTGAAGTTTGACAACGTAGAGGAAGATC
AGCCGGAGCAAGTGAATAATCCCTTCAAGCAGAGCCTGACGAAGGCTTTG
GAGGAGGATGTGAAGCTGGACGAGCATCGGTTGGTGGATCCCCAATTTGG
CACAGGCGGACTGTATGAATACATGCCTGCCCACAGCATCAAGGGCATGG
AGGACTGGGTGGCAGAGTCGGAGCACTACAAGTACTACCAAACCAGCGCC
GACTTCCCGCTCGCCATTGAACCGGAGCCTTCCTTTCACTACCCCGAGCA
TCTGTCCCTGTACACATATGAAATGGGCAACTGCTCGGACTTCAAGGGAC
CCCAGAAGTGCATGACCGGTGTGCTCTCCCACTTTATGATGGATGGTGCC
TCGACTTTGCCGCCTCTCTTCCTGCAGGTGAAGCCTGGCGAGCGTGTGCT
CGATGC
BO09163.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 1512 | CG4749-RA | 1..890 | 17..906 | 4425 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 44..933 | 17..906 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1147865..1148754 | 17..906 | 4435 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:35:42 has no hits.
BO09163.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:38 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:40 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:45 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 44..933 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:44 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 44..933 | 17..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:44 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1147867..1148754 | 19..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:45 Download gff for
BO09163.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1147867..1148754 | 19..906 | 99 | | Plus |
BO09163.complete Sequence
1543 bp (1543 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631416
> BO09163.complete
GAAGTTATCAGTCGACATGTTGAAAGCACGGAACGTTTGTTTGCTGTCCA
GGAGGTGGAAGAGTGGCGCCAAGAAGCGATGGAATGTCCTGCAGAACAAG
AAGAACAACTGTGACCGAGCGCTGGAGAACTTCGATGACTTCTACGGAAG
TGTCTACGGCACCCGGTGGAAGAACATGCGGGCGGCGCTTCTCACGAGGC
ACAAGTATGTCGCCCTGGTCAACAATTTCGGGGACACGGAGCAGACGTGC
GCCATGCTGGAGTCAGATGGAGCCATCAACATGAAGTCGCTTATTAACCT
GGCGCAGGATCGGGTAAAGGACAGCACGGAGACGGTGCCGGAACAAGGCA
AATCACGTCATGAAATTGAAAGCAAACTGGATGCACTGCTGCGGAAACAG
CAGGAGCGCGAGGTGGCCTCCATATACCCGAGCTCGCCAGAAGATGGTTC
ATCGGCGCCACTGCCGCTGGAACTGAAGTTTGACAACGTAGAGGAAGATC
AGCCGGAGCAAGTGAATAATCCCTTCAAGCAGAGCCTGACGAAGGCTTTG
GAGGAGGATGTGAAGCTGGACGAGCATCGGTTGGTGGATCCCCAATTTGG
CACAGGCGGACTGTATGAATACATGCCTGCCCACAGCATCAAGGGCATGG
AGGACTGGGTGGCAGAGTCGGAGCACTACAAGTACTACCAAACCAGCGCC
GACTTCCCGCTCGCCATTGAACCGGAGCCTTCCTTTCACTACCCCGAGCA
TCTGTCCCTGTACACATATGAAATGGGCAACTGCTCGGACTTCAAGGGAC
CCAAGAAGTGCATGACCGGTGTGCTCTCCCACTTTATGATGGATGGTGCC
TCGACTTTGCCGCCTCTCTTCCTGCAGGTGAAGCCTGGCGAGCGTGTGCT
CGATGCCTGTGCCTCTCCCGGCGGCAAATCGCTGCTTATGCTGCAGACGC
TGCACTTGGACCACCTGGTCTGCAATGACATCCAAGAATCCCGCCTAAAC
AAGCTGCGCAAAGTGATGCAGGAGTACCTGTTCGACTACAAGGAGCGCTG
GGCTGGAAAGCGCCTCATCCTCAGCCAGAGTGACGCCCGCAATCTGGACC
AGTACGAGCAGTTCGACAAGATCCTGGTCGACGTGCCCTGCACCACGGAT
CGCCATGTGCTCAACGAGCAGGACAACAATATTTTCAAGCCGACGCGCAT
AAAGGAGCGCCTGCGGATACCAGAGCTCCAGGCAGGCATCCTGGCCAACT
GCTTGCGTCTCCTGCGACCAGGCGGCAGTTTGGTCTACTCCACCTGCTCG
CTGTCGCCCATCCAGAACGATGGTGTCGTCCACATGGCTCTGCAAAAGGT
CTTCACGGAGTACGGCATCACAACTACCATCAAGGATCTGAGTCGCCACA
CGGCGCTCTTCAGCGATGTCTTCAAGTTCGAGCACCCAAAGGGACTCAAG
TATGGACAAATGGTGGTGCCCTACCTGCCGGCCAACTTTGGACCCATGTA
CTTTAGTAAAATAACCAGAAATGTGGCAAGCTTTCTAGACCAT
BO09163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1512 | CG4749-PA | 1..1509 | 17..1525 | 7545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-RA | 1628 | CG4749-RA | 44..1552 | 17..1525 | 7545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1147865..1149373 | 17..1525 | 7545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:21:40 has no hits.
BO09163.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:35 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 1..1512 | 17..1528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:38 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 33..1541 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:14 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 49..1552 | 22..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:36 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 33..1541 | 17..1525 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:46 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4749-RA | 49..1552 | 22..1527 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:46 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1147870..1149373 | 22..1527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:14 Download gff for
BO09163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1147870..1149373 | 22..1527 | 99 | | Plus |
BO09163.pep Sequence
Translation from 16 to 1543
> BO09163.pep
MLKARNVCLLSRRWKSGAKKRWNVLQNKKNNCDRALENFDDFYGSVYGTR
WKNMRAALLTRHKYVALVNNFGDTEQTCAMLESDGAINMKSLINLAQDRV
KDSTETVPEQGKSRHEIESKLDALLRKQQEREVASIYPSSPEDGSSAPLP
LELKFDNVEEDQPEQVNNPFKQSLTKALEEDVKLDEHRLVDPQFGTGGLY
EYMPAHSIKGMEDWVAESEHYKYYQTSADFPLAIEPEPSFHYPEHLSLYT
YEMGNCSDFKGPKKCMTGVLSHFMMDGASTLPPLFLQVKPGERVLDACAS
PGGKSLLMLQTLHLDHLVCNDIQESRLNKLRKVMQEYLFDYKERWAGKRL
ILSQSDARNLDQYEQFDKILVDVPCTTDRHVLNEQDNNIFKPTRIKERLR
IPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQKVFTEYG
ITTTIKDLSRHTALFSDVFKFEHPKGLKYGQMVVPYLPANFGPMYFSKIT
RNVASFLDH
BO09163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4749-PA | 503 | CG4749-PA | 1..503 | 1..503 | 2660 | 100 | Plus |
| Nsun2-PA | 746 | CG6133-PA | 162..339 | 276..443 | 196 | 29.7 | Plus |
