Clone BO09164 Report

Search the DGRC for BO09164

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG9104-RA
Protein status:BO09164.pep: validated full length
Sequenced Size:1270

Clone Sequence Records

BO09164.3prime Sequence

887 bp (884 high quality bases) assembled on 2006-01-11

> BO09164.3prime
ATGGTCTAGAAAGCTTGCCTTCCAGATCACAGTCACATTCGTGTCCTTCT
CGATATCCCGCTCGATGGTGCAGGGCGAGAGGCCCGTCTTGCAGCAGATC
TCGTCAAAGCTGATCAGCCCGGTGTACATCTTCTGCCGCCCGGAAGGCAC
TGAGCCCGTAAACACCGGGTACTTGTGGATGCAGCGAATGAATCGGTGCT
GCAGCCCGAAGATCACCATGCGACGCTCATCGATGTTGTGGTGCTGGGGG
CACAATCTCTGGCAGATCGCTCGCAGAGTAACGCCGTGAGTCATCGAGGC
GTAGAACTGAAAGATGCGCTGAACACTGGGCAGCGTCTTGTCCGGACGCA
AGGCCACGTATTTCCGGCATGCGCCGCTCAGTGATGCGCTCTGGATGAGA
TGCTTTAGGTTCTGCGTCATGTACACGTTGCTGTACTTCAGGATTGGCAG
CAGCTGAACGACCCCGTAGTAGACCAGATTCTGTATGCACGACTTGACCA
GGTCCGTTTCCACGTCCGCTTCGGCGGCAATGCGGGCAACATGGTTGATT
CCATTTATATAAGGCAGGATCTGTTGTGTGGTAAGGTCCCAGTTGTCCAG
CGGAGCATCGCGCAGGTTCGCCAGCAGCAGGGGCACCATGTGATCCTTGA
CCGGCGGCGGGTCCGGCTTGTGCATGACGATCTTCAGGTATATAGTGTTA
TCGCCCTCAACAATGGTGGCCACCTTCCGCTCGTTAAGGTCGCGTAGTAC
AGTCTCAAAGATGTTCTGTAGGCGGCGCTTGTCATCTTCGCGAGACAGGA
AGCACGACTCCTCCTCCATCATTATGAGGTACTCGGACAGCTTCTTGACG
ACCGGCTCGTACTGGACGCTCCTGGCCCGCGAGTCGC

BO09164.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 1239 CG9104-RA 368..1236 887..19 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:15:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 493..1361 887..19 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:15:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16882855..16883408 19..572 2770 100 Plus
X 23542271 X 16883495..16883811 571..887 1585 100 Plus
Blast to na_te.dros performed on 2015-02-03 09:15:03 has no hits.

BO09164.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:38 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 368..1239 16..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:41 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 368..1239 16..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:24 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 493..1361 19..887 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:59:30 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 493..1361 19..887 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:59:30 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16882855..16883406 19..570 100 <- Plus
X 16883495..16883811 571..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:24 Download gff for BO09164.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16776888..16777439 19..570 100 <- Plus
arm_X 16777528..16777844 571..887 100   Plus

BO09164.5prime Sequence

823 bp (802 high quality bases) assembled on 2006-01-11

> BO09164.5prime
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTG

BO09164.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 1239 CG9104-RA 1..807 17..823 4035 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 125..932 16..823 4040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16883495..16884004 700..191 2550 100 Minus
X 23542271 X 16884062..16884241 195..16 900 100 Minus
X 23542271 X 16883284..16883408 823..699 625 100 Minus
Blast to na_te.dros performed on 2015-02-13 07:41:33 has no hits.

BO09164.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:39 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:43 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-PA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:12 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 122..932 13..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:46:31 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 122..932 13..823 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:46:31 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16883284..16883406 701..823 100 <- Minus
X 16883495..16884001 194..700 100 <- Minus
X 16884064..16884244 13..193 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:12 Download gff for BO09164.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16777317..16777439 701..823 100 <- Minus
arm_X 16777528..16778034 194..700 100 <- Minus
arm_X 16778097..16778277 13..193 99   Minus

BO09164.complete Sequence

1270 bp (1270 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631417

> BO09164.complete
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTGGCCTTGCGTCCGGACAAGACGCTGCCCAGTGTTC
AGCGCATCTTTCAGTTCTACGCCTCGATGACTCACGGCGTTACTCTGCGA
GCGATCTGCCAGAGATTGTGCCCCCAGCACCACAACATCGATGAGCGTCG
CATGGTGATCTTCGGGCTGCAGCACCGATTCATTCGCTGCATCCACAAGT
ACCCGGTGTTTACGGGCTCAGTGCCTTCCGGGCGGCAGAAGATGTACACC
GGGCTGATCAGCTTTGACGAGATCTGCTGCAAGACGGGCCTCTCGCCCTG
CACCATCGAGCGGGATATCGAGAAGGACACGAATGTGACTGTGATCTGGA
AGGCAAGCTTTCTAGACCAT

BO09164.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1239 CG9104-PA 1..1236 17..1252 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-RA 1707 CG9104-RA 125..1361 16..1252 6185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16882855..16883408 1252..699 2770 100 Minus
X 23542271 X 16883495..16884004 700..191 2550 100 Minus
X 23542271 X 16884062..16884241 195..16 900 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:02:03 has no hits.

BO09164.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:36 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 1..1239 17..1255 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:40 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 82..1321 13..1252 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:07 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 126..1361 17..1254 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:37 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 82..1321 13..1252 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:10 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
CG9104-RA 126..1361 17..1254 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:10 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882851..16883406 701..1254 99 <- Minus
X 16883495..16884001 194..700 100 <- Minus
X 16884064..16884240 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:07 Download gff for BO09164.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16776884..16777439 701..1254 99 <- Minus
arm_X 16777528..16778034 194..700 100 <- Minus
arm_X 16778097..16778273 17..193 100   Minus

BO09164.pep Sequence

Translation from 16 to 1270

> BO09164.pep
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWKASFLDH

BO09164.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG9104-PA 412 CG9104-PA 1..412 1..412 2168 100 Plus