Clone Sequence Records
BO09164.3prime Sequence
887 bp (884 high quality bases) assembled on 2006-01-11
> BO09164.3prime
ATGGTCTAGAAAGCTTGCCTTCCAGATCACAGTCACATTCGTGTCCTTCT
CGATATCCCGCTCGATGGTGCAGGGCGAGAGGCCCGTCTTGCAGCAGATC
TCGTCAAAGCTGATCAGCCCGGTGTACATCTTCTGCCGCCCGGAAGGCAC
TGAGCCCGTAAACACCGGGTACTTGTGGATGCAGCGAATGAATCGGTGCT
GCAGCCCGAAGATCACCATGCGACGCTCATCGATGTTGTGGTGCTGGGGG
CACAATCTCTGGCAGATCGCTCGCAGAGTAACGCCGTGAGTCATCGAGGC
GTAGAACTGAAAGATGCGCTGAACACTGGGCAGCGTCTTGTCCGGACGCA
AGGCCACGTATTTCCGGCATGCGCCGCTCAGTGATGCGCTCTGGATGAGA
TGCTTTAGGTTCTGCGTCATGTACACGTTGCTGTACTTCAGGATTGGCAG
CAGCTGAACGACCCCGTAGTAGACCAGATTCTGTATGCACGACTTGACCA
GGTCCGTTTCCACGTCCGCTTCGGCGGCAATGCGGGCAACATGGTTGATT
CCATTTATATAAGGCAGGATCTGTTGTGTGGTAAGGTCCCAGTTGTCCAG
CGGAGCATCGCGCAGGTTCGCCAGCAGCAGGGGCACCATGTGATCCTTGA
CCGGCGGCGGGTCCGGCTTGTGCATGACGATCTTCAGGTATATAGTGTTA
TCGCCCTCAACAATGGTGGCCACCTTCCGCTCGTTAAGGTCGCGTAGTAC
AGTCTCAAAGATGTTCTGTAGGCGGCGCTTGTCATCTTCGCGAGACAGGA
AGCACGACTCCTCCTCCATCATTATGAGGTACTCGGACAGCTTCTTGACG
ACCGGCTCGTACTGGACGCTCCTGGCCCGCGAGTCGC
BO09164.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 1239 | CG9104-RA | 368..1236 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:15:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 493..1361 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:15:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16882855..16883408 | 19..572 | 2770 | 100 | Plus |
X | 23542271 | X | 16883495..16883811 | 571..887 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 09:15:03 has no hits.
BO09164.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:38 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 368..1239 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:41 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 368..1239 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:24 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 493..1361 | 19..887 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:59:30 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 493..1361 | 19..887 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:59:30 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882855..16883406 | 19..570 | 100 | <- | Plus |
X | 16883495..16883811 | 571..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:24 Download gff for
BO09164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16776888..16777439 | 19..570 | 100 | <- | Plus |
arm_X | 16777528..16777844 | 571..887 | 100 | | Plus |
BO09164.5prime Sequence
823 bp (802 high quality bases) assembled on 2006-01-11
> BO09164.5prime
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTG
BO09164.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 1239 | CG9104-RA | 1..807 | 17..823 | 4035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 125..932 | 16..823 | 4040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16883495..16884004 | 700..191 | 2550 | 100 | Minus |
X | 23542271 | X | 16884062..16884241 | 195..16 | 900 | 100 | Minus |
X | 23542271 | X | 16883284..16883408 | 823..699 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:41:33 has no hits.
BO09164.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:39 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:43 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:49:12 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 122..932 | 13..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:46:31 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 122..932 | 13..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:46:31 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16883284..16883406 | 701..823 | 100 | <- | Minus |
X | 16883495..16884001 | 194..700 | 100 | <- | Minus |
X | 16884064..16884244 | 13..193 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:49:12 Download gff for
BO09164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16777317..16777439 | 701..823 | 100 | <- | Minus |
arm_X | 16777528..16778034 | 194..700 | 100 | <- | Minus |
arm_X | 16778097..16778277 | 13..193 | 99 | | Minus |
BO09164.complete Sequence
1270 bp (1270 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631417
> BO09164.complete
GAAGTTATCAGTCGACATGCATTCCCATACGAATGAGACGGCTGCGACGT
CGACAACGGCGGGCGCGGTCACGAATGGAGCAGGCGGATCAGGAGCTGGA
GCAGCGGGTGCCCATGGCAGCACGGAGGGCAAGATCCGGTGCATCTTCCT
CAGCGAGTTTCATGCGACGGCGGGCTGCAAGATAAGCTGCCAGGTTCCTG
ATAACTACATATCCAAGGATGTGTTCGATGCTATCAATGTTTACATCATA
CCCAAGCAGCATCTTCAACGCTGCATTCTCACCGTCAACGCAATGGATGT
AAAGATAGTCGGCTATCCAGTGGGCATCCAGGATCAGCAGAAGTACGCAC
GGAATGCCTTCCTGTTTAACCTATGCTTTGTCTGCGACTCGCGGGCCAGG
AGCGTCCAGTACGAGCCGGTCGTCAAGAAGCTGTCCGAGTACCTCATAAT
GATGGAGGAGGAGTCGTGCTTCCTGTCTCGCGAAGATGACAAGCGCCGCC
TACAGAACATCTTTGAGACTGTACTACGCGACCTTAACGAGCGGAAGGTG
GCCACCATTGTTGAGGGCGATAACACTATATACCTGAAGATCGTCATGCA
CAAGCCGGACCCGCCGCCGGTCAAGGATCACATGGTGCCCCTGCTGCTGG
CGAACCTGCGCGATGCTCCGCTGGACAACTGGGACCTTACCACACAACAG
ATCCTGCCTTATATAAATGGAATCAACCATGTTGCCCGCATTGCCGCCGA
AGCGGACGTGGAAACGGACCTGGTCAAGTCGTGCATACAGAATCTGGTCT
ACTACGGGGTCGTTCAGCTGCTGCCAATCCTGAAGTACAGCAACGTGTAC
ATGACGCAGAACCTAAAGCATCTCATCCAGAGCGCATCACTGAGCGGCGC
ATGCCGGAAATACGTGGCCTTGCGTCCGGACAAGACGCTGCCCAGTGTTC
AGCGCATCTTTCAGTTCTACGCCTCGATGACTCACGGCGTTACTCTGCGA
GCGATCTGCCAGAGATTGTGCCCCCAGCACCACAACATCGATGAGCGTCG
CATGGTGATCTTCGGGCTGCAGCACCGATTCATTCGCTGCATCCACAAGT
ACCCGGTGTTTACGGGCTCAGTGCCTTCCGGGCGGCAGAAGATGTACACC
GGGCTGATCAGCTTTGACGAGATCTGCTGCAAGACGGGCCTCTCGCCCTG
CACCATCGAGCGGGATATCGAGAAGGACACGAATGTGACTGTGATCTGGA
AGGCAAGCTTTCTAGACCAT
BO09164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1239 | CG9104-PA | 1..1236 | 17..1252 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-RA | 1707 | CG9104-RA | 125..1361 | 16..1252 | 6185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16882855..16883408 | 1252..699 | 2770 | 100 | Minus |
X | 23542271 | X | 16883495..16884004 | 700..191 | 2550 | 100 | Minus |
X | 23542271 | X | 16884062..16884241 | 195..16 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:02:03 has no hits.
BO09164.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:36 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 1..1239 | 17..1255 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:40 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 82..1321 | 13..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:07 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 126..1361 | 17..1254 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:37 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 82..1321 | 13..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:10 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9104-RA | 126..1361 | 17..1254 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:10 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882851..16883406 | 701..1254 | 99 | <- | Minus |
X | 16883495..16884001 | 194..700 | 100 | <- | Minus |
X | 16884064..16884240 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:07 Download gff for
BO09164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16776884..16777439 | 701..1254 | 99 | <- | Minus |
arm_X | 16777528..16778034 | 194..700 | 100 | <- | Minus |
arm_X | 16778097..16778273 | 17..193 | 100 | | Minus |
BO09164.pep Sequence
Translation from 16 to 1270
> BO09164.pep
MHSHTNETAATSTTAGAVTNGAGGSGAGAAGAHGSTEGKIRCIFLSEFHA
TAGCKISCQVPDNYISKDVFDAINVYIIPKQHLQRCILTVNAMDVKIVGY
PVGIQDQQKYARNAFLFNLCFVCDSRARSVQYEPVVKKLSEYLIMMEEES
CFLSREDDKRRLQNIFETVLRDLNERKVATIVEGDNTIYLKIVMHKPDPP
PVKDHMVPLLLANLRDAPLDNWDLTTQQILPYINGINHVARIAAEADVET
DLVKSCIQNLVYYGVVQLLPILKYSNVYMTQNLKHLIQSASLSGACRKYV
ALRPDKTLPSVQRIFQFYASMTHGVTLRAICQRLCPQHHNIDERRMVIFG
LQHRFIRCIHKYPVFTGSVPSGRQKMYTGLISFDEICCKTGLSPCTIERD
IEKDTNVTVIWKASFLDH
BO09164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9104-PA | 412 | CG9104-PA | 1..412 | 1..412 | 2168 | 100 | Plus |