Clone BO09170 Report

Search the DGRC for BO09170

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptSF2-RA
Protein status:BO09170.pep: validated full length
Sequenced Size:799

Clone Sequence Records

BO09170.3prime Sequence

797 bp (796 high quality bases) assembled on 2006-01-11

> BO09170.3prime
ATGGTCTAGAAAGCTTGCATAGTTAGAACGTGAGCGAGACCTGGAATAAG
ATTGACGTCGCACTGGGGAGTATGTGGGAGTGCCACGACGGCGCGGCCTC
GACGAGAATGAGCGCGAACGGGATCTGTCGCGGTAGTCACGGCTTCCACC
TCCGCCGCTGCCGCCACCACCTCCACCGCTGCCGCCACCACCACCGCCTC
TGTCGTTATCACCGCTATCCTCGCGTACGCGAATGTAGGCAACCTCGCCC
TCATGCGATCGGAAGCGAGAGTCGTCCAATTTTTTGATTGCGTACTTCAT
GTCCTCGTGGCGCAGGAACTCAACGACGCCGGAACCATCCTTGTAAGTGT
CCGCGAAGCAGACGTCGCCGGCCTCGCGCATGTGATCCTTGAGATCTTGC
CACGATCCGGAGGCGGGCAGTCCAGTAACCATGACGCGGTACTGCGAGCG
CTTGGCTGGCGGTCCGCGTCCGCCCATCCGTCCCCCACCGTCGCGGCTTC
GGTCATTGCGGTTGCCGCCGCGGTAGCTTCCAGGACCACCGCCCCGCGGG
AACTCCACGCGCAGACGATACCCATCGTAGTCGTAGCCGTCGCGCGCCTT
CACCGCATCGTCGGCATCCCGCGCATCTTCGAACTCAACAAAAGCAAATG
GCGGCCCACGCCGATTTTTCAGATCGACGAAAGTTACTTTGCCGAACTTG
TGGAACAGGTCCTGGATATCCTTGGTGCGTATATCTGGGGGAAGGTTGCC
CACATATATACGGCACTCGTTGCGTGATCCCATGTCGACTGATAACT

BO09170.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6987-PA 768 SF2-RA 1..765 783..19 3825 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:23
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..862 783..19 3825 100 Minus
SF2-RA 1392 CG6987-RA 98..862 783..19 3825 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 249..620 1860 100 Plus
3R 32079331 3R 16341727..16341891 619..783 825 100 Plus
3R 32079331 3R 16340822..16340948 125..251 635 100 Plus
3R 32079331 3R 16340657..16340766 19..128 550 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:30:19 has no hits.

BO09170.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:50 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-PA 1..768 15..783 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:58 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6987-PA 1..768 15..783 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:47 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..865 15..790 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:48 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..865 15..790 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:48 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16341728..16341896 620..790 97   Plus
3R 16340653..16340762 15..124 98 <- Plus
3R 16340822..16340946 125..249 100 <- Plus
3R 16341229..16341598 250..619 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:47 Download gff for BO09170.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166375..12166484 15..124 98 <- Plus
arm_3R 12166544..12166668 125..249 100 <- Plus
arm_3R 12166951..12167320 250..619 100 <- Plus
arm_3R 12167450..12167618 620..790 97   Plus

BO09170.5prime Sequence

797 bp (796 high quality bases) assembled on 2006-01-11

> BO09170.5prime
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATGCAAGCTTTCTAGACC

BO09170.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6987-PA 768 SF2-RA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..862 17..781 3825 100 Plus
SF2-RA 1392 CG6987-RA 98..862 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 551..180 1860 100 Minus
3R 32079331 3R 16341727..16341891 181..17 825 100 Minus
3R 32079331 3R 16340822..16340948 675..549 635 100 Minus
3R 32079331 3R 16340657..16340766 781..672 550 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:49:06 has no hits.

BO09170.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:51 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-PA 1..768 17..785 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:59 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6987-PA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:39 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..865 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:14 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 93..865 10..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:14 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16340653..16340762 676..785 98 <- Minus
3R 16340822..16340946 551..675 100 <- Minus
3R 16341229..16341598 181..550 100 <- Minus
3R 16341728..16341896 10..180 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:39 Download gff for BO09170.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166375..12166484 676..785 98 <- Minus
arm_3R 12166544..12166668 551..675 100 <- Minus
arm_3R 12166951..12167320 181..550 100 <- Minus
arm_3R 12167450..12167618 10..180 97   Minus

BO09170.complete Sequence

799 bp (799 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631418

> BO09170.complete
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATGCAAGCTTTCTAGACCAT

BO09170.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 768 CG6987-PB 1..765 17..781 3825 100 Plus
SF2-RA 768 CG6987-PA 1..765 17..781 3825 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:44
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-RB 2576 CG6987-RB 98..862 17..781 3825 100 Plus
SF2-RA 1392 CG6987-RA 98..862 17..781 3825 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16341228..16341599 551..180 1860 100 Minus
3R 32079331 3R 16341727..16341891 181..17 825 100 Minus
3R 32079331 3R 16340822..16340948 675..549 635 100 Minus
3R 32079331 3R 16340657..16340766 781..672 550 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:36:41 has no hits.

BO09170.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:41 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 1..768 17..785 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:41 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 89..861 10..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:59 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 98..862 17..783 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:41 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 89..861 10..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:51 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
SF2-RA 98..862 17..783 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:51 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16340655..16340762 676..783 98 <- Minus
3R 16340822..16340946 551..675 100 <- Minus
3R 16341229..16341598 181..550 100 <- Minus
3R 16341728..16341891 17..180 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:59 Download gff for BO09170.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12166377..12166484 676..783 98 <- Minus
arm_3R 12166544..12166668 551..675 100 <- Minus
arm_3R 12166951..12167320 181..550 100 <- Minus
arm_3R 12167450..12167613 17..180 100   Minus

BO09170.pep Sequence

Translation from 16 to 799

> BO09170.pep
MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE
FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG
GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG
SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG
GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR
SRSNYASFLDH

BO09170.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:27
Subject Length Description Subject Range Query Range Score Percent Strand
SF2-PB 255 CG6987-PB 1..255 1..255 1375 100 Plus
SF2-PA 255 CG6987-PA 1..255 1..255 1375 100 Plus
B52-PN 350 CG10851-PN 5..236 8..257 406 43 Plus
B52-PC 350 CG10851-PC 5..236 8..257 406 43 Plus
B52-PA 350 CG10851-PA 5..236 8..257 406 43 Plus