Clone Sequence Records
BO09170.3prime Sequence
797 bp (796 high quality bases) assembled on 2006-01-11
> BO09170.3prime
ATGGTCTAGAAAGCTTGCATAGTTAGAACGTGAGCGAGACCTGGAATAAG
ATTGACGTCGCACTGGGGAGTATGTGGGAGTGCCACGACGGCGCGGCCTC
GACGAGAATGAGCGCGAACGGGATCTGTCGCGGTAGTCACGGCTTCCACC
TCCGCCGCTGCCGCCACCACCTCCACCGCTGCCGCCACCACCACCGCCTC
TGTCGTTATCACCGCTATCCTCGCGTACGCGAATGTAGGCAACCTCGCCC
TCATGCGATCGGAAGCGAGAGTCGTCCAATTTTTTGATTGCGTACTTCAT
GTCCTCGTGGCGCAGGAACTCAACGACGCCGGAACCATCCTTGTAAGTGT
CCGCGAAGCAGACGTCGCCGGCCTCGCGCATGTGATCCTTGAGATCTTGC
CACGATCCGGAGGCGGGCAGTCCAGTAACCATGACGCGGTACTGCGAGCG
CTTGGCTGGCGGTCCGCGTCCGCCCATCCGTCCCCCACCGTCGCGGCTTC
GGTCATTGCGGTTGCCGCCGCGGTAGCTTCCAGGACCACCGCCCCGCGGG
AACTCCACGCGCAGACGATACCCATCGTAGTCGTAGCCGTCGCGCGCCTT
CACCGCATCGTCGGCATCCCGCGCATCTTCGAACTCAACAAAAGCAAATG
GCGGCCCACGCCGATTTTTCAGATCGACGAAAGTTACTTTGCCGAACTTG
TGGAACAGGTCCTGGATATCCTTGGTGCGTATATCTGGGGGAAGGTTGCC
CACATATATACGGCACTCGTTGCGTGATCCCATGTCGACTGATAACT
BO09170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6987-PA | 768 | SF2-RA | 1..765 | 783..19 | 3825 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..862 | 783..19 | 3825 | 100 | Minus |
SF2-RA | 1392 | CG6987-RA | 98..862 | 783..19 | 3825 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 249..620 | 1860 | 100 | Plus |
3R | 32079331 | 3R | 16341727..16341891 | 619..783 | 825 | 100 | Plus |
3R | 32079331 | 3R | 16340822..16340948 | 125..251 | 635 | 100 | Plus |
3R | 32079331 | 3R | 16340657..16340766 | 19..128 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:30:19 has no hits.
BO09170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:50 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-PA | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:58 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6987-PA | 1..768 | 15..783 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:30:47 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..865 | 15..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:41:48 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..865 | 15..790 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:41:48 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16341728..16341896 | 620..790 | 97 | | Plus |
3R | 16340653..16340762 | 15..124 | 98 | <- | Plus |
3R | 16340822..16340946 | 125..249 | 100 | <- | Plus |
3R | 16341229..16341598 | 250..619 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:30:47 Download gff for
BO09170.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166375..12166484 | 15..124 | 98 | <- | Plus |
arm_3R | 12166544..12166668 | 125..249 | 100 | <- | Plus |
arm_3R | 12166951..12167320 | 250..619 | 100 | <- | Plus |
arm_3R | 12167450..12167618 | 620..790 | 97 | | Plus |
BO09170.5prime Sequence
797 bp (796 high quality bases) assembled on 2006-01-11
> BO09170.5prime
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATGCAAGCTTTCTAGACC
BO09170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6987-PA | 768 | SF2-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:49:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..862 | 17..781 | 3825 | 100 | Plus |
SF2-RA | 1392 | CG6987-RA | 98..862 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:49:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 551..180 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 16341727..16341891 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 16340822..16340948 | 675..549 | 635 | 100 | Minus |
3R | 32079331 | 3R | 16340657..16340766 | 781..672 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:49:06 has no hits.
BO09170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:51 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-PA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:04:59 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6987-PA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:40:39 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..865 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:11:14 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 93..865 | 10..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:11:14 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16340653..16340762 | 676..785 | 98 | <- | Minus |
3R | 16340822..16340946 | 551..675 | 100 | <- | Minus |
3R | 16341229..16341598 | 181..550 | 100 | <- | Minus |
3R | 16341728..16341896 | 10..180 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:40:39 Download gff for
BO09170.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166375..12166484 | 676..785 | 98 | <- | Minus |
arm_3R | 12166544..12166668 | 551..675 | 100 | <- | Minus |
arm_3R | 12166951..12167320 | 181..550 | 100 | <- | Minus |
arm_3R | 12167450..12167618 | 10..180 | 97 | | Minus |
BO09170.complete Sequence
799 bp (799 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631418
> BO09170.complete
GAAGTTATCAGTCGACATGGGATCACGCAACGAGTGCCGTATATATGTGG
GCAACCTTCCCCCAGATATACGCACCAAGGATATCCAGGACCTGTTCCAC
AAGTTCGGCAAAGTAACTTTCGTCGATCTGAAAAATCGGCGTGGGCCGCC
ATTTGCTTTTGTTGAGTTCGAAGATGCGCGGGATGCCGACGATGCGGTGA
AGGCGCGCGACGGCTACGACTACGATGGGTATCGTCTGCGCGTGGAGTTC
CCGCGGGGCGGTGGTCCTGGAAGCTACCGCGGCGGCAACCGCAATGACCG
AAGCCGCGACGGTGGGGGACGGATGGGCGGACGCGGACCGCCAGCCAAGC
GCTCGCAGTACCGCGTCATGGTTACTGGACTGCCCGCCTCCGGATCGTGG
CAAGATCTCAAGGATCACATGCGCGAGGCCGGCGACGTCTGCTTCGCGGA
CACTTACAAGGATGGTTCCGGCGTCGTTGAGTTCCTGCGCCACGAGGACA
TGAAGTACGCAATCAAAAAATTGGACGACTCTCGCTTCCGATCGCATGAG
GGCGAGGTTGCCTACATTCGCGTACGCGAGGATAGCGGTGATAACGACAG
AGGCGGTGGTGGTGGCGGCAGCGGTGGAGGTGGTGGCGGCAGCGGCGGAG
GTGGAAGCCGTGACTACCGCGACAGATCCCGTTCGCGCTCATTCTCGTCG
AGGCCGCGCCGTCGTGGCACTCCCACATACTCCCCAGTGCGACGTCAATC
TTATTCCAGGTCTCGCTCACGTTCTAACTATGCAAGCTTTCTAGACCAT
BO09170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 768 | CG6987-PB | 1..765 | 17..781 | 3825 | 100 | Plus |
SF2-RA | 768 | CG6987-PA | 1..765 | 17..781 | 3825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-RB | 2576 | CG6987-RB | 98..862 | 17..781 | 3825 | 100 | Plus |
SF2-RA | 1392 | CG6987-RA | 98..862 | 17..781 | 3825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16341228..16341599 | 551..180 | 1860 | 100 | Minus |
3R | 32079331 | 3R | 16341727..16341891 | 181..17 | 825 | 100 | Minus |
3R | 32079331 | 3R | 16340822..16340948 | 675..549 | 635 | 100 | Minus |
3R | 32079331 | 3R | 16340657..16340766 | 781..672 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:41 has no hits.
BO09170.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:41 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 1..768 | 17..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:41 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 89..861 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:59 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 98..862 | 17..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:41 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 89..861 | 10..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:51 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SF2-RA | 98..862 | 17..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:51 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16340655..16340762 | 676..783 | 98 | <- | Minus |
3R | 16340822..16340946 | 551..675 | 100 | <- | Minus |
3R | 16341229..16341598 | 181..550 | 100 | <- | Minus |
3R | 16341728..16341891 | 17..180 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:59 Download gff for
BO09170.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12166377..12166484 | 676..783 | 98 | <- | Minus |
arm_3R | 12166544..12166668 | 551..675 | 100 | <- | Minus |
arm_3R | 12166951..12167320 | 181..550 | 100 | <- | Minus |
arm_3R | 12167450..12167613 | 17..180 | 100 | | Minus |
BO09170.pep Sequence
Translation from 16 to 799
> BO09170.pep
MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPPFAFVE
FEDARDADDAVKARDGYDYDGYRLRVEFPRGGGPGSYRGGNRNDRSRDGG
GRMGGRGPPAKRSQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDG
SGVVEFLRHEDMKYAIKKLDDSRFRSHEGEVAYIRVREDSGDNDRGGGGG
GSGGGGGGSGGGGSRDYRDRSRSRSFSSRPRRRGTPTYSPVRRQSYSRSR
SRSNYASFLDH
BO09170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SF2-PB | 255 | CG6987-PB | 1..255 | 1..255 | 1375 | 100 | Plus |
SF2-PA | 255 | CG6987-PA | 1..255 | 1..255 | 1375 | 100 | Plus |
B52-PN | 350 | CG10851-PN | 5..236 | 8..257 | 406 | 43 | Plus |
B52-PC | 350 | CG10851-PC | 5..236 | 8..257 | 406 | 43 | Plus |
B52-PA | 350 | CG10851-PA | 5..236 | 8..257 | 406 | 43 | Plus |