Clone BO09171 Report

Search the DGRC for BO09171

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG7102-RA
Protein status:BO09171.pep: Imported from assembly
Sequenced Size:1579

Clone Sequence Records

BO09171.3prime Sequence

942 bp (822 high quality bases) assembled on 2006-01-11

> BO09171.3prime
ATGGTCTAGAAAGCTTGCGTATCTATCGTATTTTGCTTTTGTGGGCACCC
CAGGAGCTTGGCCGTTTGTTGAGTGGTTCAGGTTCTGATTATTGCTGTGA
TTTGCTCCACTATTACTACTTCCTGCCGGCGAGGAAAGGGTATAGACCTC
ATAGTCGGTGATGGTAAAGTTATAGTCCCCGAAAAGTGTCAGGTGAGCAG
CGTTGGTTCCGTCGTAGGAATGCGGAAGATTCGAGTATGAGTCCATGTTT
GTATTACAGTTGCTGGAAATGAGCAGATCGGCTCCAGCACCAAAAATGGG
ACCGCAATCAGGATGATAGCAAATGGCATATGGTTTCTTTACAATATCAA
ACTTGACCGGCTGTTCCCCATTGGCTGGATTCAAGGCAAAGAGGAAGGCT
CGCTCGGACTGAACATATCCCCCCTTTCGGCTTGTTTTGGCCCACGCCAC
ATCCGTATAACCACCACTGATCTCTCCATGCGATCCCAAGCCAATAACCA
TGCAAGGAGCCACGCCGTCGCAATAACGATGAAAGGCTCCAGAATCGTAG
CCATGAGTGGACGCTCGGAAAACTAATCTCCAGGATTGCTTGCCCACTCC
AACCCAATTATTGAGAACAGTCTGTAGTGCCAGATTGTCATTCTTCAGGA
TTTGGGATCCGGGAAACATGTTGACCGCTACAGCTAGGCGGGGCTGAAGT
CTCTTATCGTTATCCATCATCTTATTGGCATGCAAAGCGGCATAGCGATA
TCGTTCTAGGGATAGTTCCATAGGTACAGCTCCTGTAGGTTCCACTTCCT
CCGCGAAAACTTGGCTATCGATGAGAAGCAGACGCACGTGACCCATTACA
CCGCTTAAGTGTTGGCAGACACGAGCACGCTCCTCCTCAGTCCNATGTGC
AGTGGGTTGGGTGACTCCCTGCCTGGTATTTGCCCAAGATAA

BO09171.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PA 1548 CG7102-RA 646..1545 918..19 4456 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 1083..2006 942..19 4534 99.5 Minus
CG7102-RA 2075 CG7102-RA 1083..2006 942..19 4534 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884534 308..932 3064 99.7 Plus
2L 23513712 2L 7883540..7883828 19..307 1430 99.7 Plus
Blast to na_te.dros performed on 2015-01-31 15:12:46 has no hits.

BO09171.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:52 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 624..1548 18..940 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:01 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 624..1548 18..940 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:12:53 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1083..2006 19..942 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:34:13 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 1083..2006 19..942 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:34:13 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7883540..7883828 19..307 99 <- Plus
2L 7883911..7884545 308..942 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:12:53 Download gff for BO09171.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7883540..7883828 19..307 99 <- Plus
arm_2L 7883911..7884545 308..942 99   Plus

BO09171.5prime Sequence

929 bp (779 high quality bases) assembled on 2006-01-11

> BO09171.5prime
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAACGATAAGAGACTTCAGCCCCGCCTAGCTGT
AGCGGTCAACATGTTTCCCGGATCCCAAT

BO09171.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PA 1548 CG7102-RA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:40:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 461..1373 16..928 4565 100 Plus
CG7102-RA 2075 CG7102-RA 461..1373 16..928 4565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7884255..7884581 928..602 1635 100 Minus
2L 23513712 2L 7886306..7886472 469..303 835 100 Minus
2L 23513712 2L 7886535..7886698 304..141 820 100 Minus
2L 23513712 2L 7884655..7884791 601..465 685 100 Minus
2L 23513712 2L 7886926..7887053 143..16 640 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:40:40 has no hits.

BO09171.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:53 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:03 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:37 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 455..1373 7..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:54 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 455..1373 7..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:54 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7884253..7884581 602..929 99 <- Minus
2L 7884655..7884788 468..601 100 <- Minus
2L 7886308..7886470 305..467 100 <- Minus
2L 7886535..7886697 142..304 100 <- Minus
2L 7886928..7887059 7..141 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:37 Download gff for BO09171.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7884655..7884788 468..601 100 <- Minus
arm_2L 7886308..7886470 305..467 100 <- Minus
arm_2L 7884253..7884581 602..929 99 <- Minus
arm_2L 7886535..7886697 142..304 100 <- Minus
arm_2L 7886928..7887059 7..141 97   Minus

BO09171.complete Sequence

1579 bp assembled on 2008-08-14

GenBank Submission: FJ631419

> BO09171.complete
GAAGTTATCAGTCGACATGAGTCTGCCCCAGTTGATCGAGGATCTGCAGC
GCCTTTCCGAGGATCAGGATAGTGCAGATGTGGTATTCATTTGTGGCAGA
GATGAGCGCATATATGCCCATAGATTAATGCTAATGGCTCGGTGCAAGAG
CTTCAAGACTGCGAAGAGAGGTGAAGTGTGTCGAATTCCCGGATGCACAG
TATCGCCAGCAGCCCCAGGAGCTTCAACTCCGACCACCATACGATTACCA
CACGTGAATCCGGAACTATTCAGGCAGTTCATCTTGTACGTTTACACCGC
AAAGTTGGTTCTCCAGGACTCGCAAGTATTTCAAATGATGATATTGGCAC
AGGATATCGGTGTGGTTGAGCTACGAACTGCCTGCGAGGATCACGTTATA
TCGACATTGTCGGTGGATAATGCCTGCACATTTTTAACCGCCGTTATGGA
TATACACGAAAAAGCAGGTGCCAAATGCGCTGCCTCGTTTATGGAACGCT
GCATCATCTACATAGGGGAAAATGCAAATGAGTGCGTTAAGACTAATGCC
TTCCTTACTTTAACAAAGGATGCCATTATTAAGATTATTTCCTCAGACTA
TTTCTGCTTGGAAGAGGAGGAAGTGTGGCGCTGCGTTTTATCCTGGGCCA
AATACCAGGCAGGAGTCACCCAACCCACTGCACATTGGACTGAGGAGGAG
CGTGCTCGTGTCTGCCAACACTTAAGCGGTGTAATGGGTCACGTGCGTCT
GCTTCTCATCGATAGCCAAGTTTTCGCGGAGGAAGTGGAACCTACAGGAG
CTGTACCTATGGAACTATCCCTAGAACGATATCGCTATGCCGCTTTGCAT
GCCAATAAGATGATGGATAACGATAAGAGACTTCAGCCCCGCCTAGCTGT
AGCGGTCAACATGTTTCCCGGATCCCAAATCCTGAAGAATGACAATCTGG
CACTACAGACTGTTCTCAATAATTGGGTTGGAGTGGGCAAGCAATCCTGG
AGATTAGTTTTCCGAGCGTCCACTCATGGCTACGATTCTGGAGCCTTTCA
TCGTTATTGCGACGGCGTGGCTCCTTGCATGGTTATTGGCTTGGGATCGC
ATGGAGAGATCAGTGGTGGTTATACGGATGTGGCGTGGGCCAAAACAAGC
CGAAAGGGGGGATATGTTCAGTCCGAGCGAGCCTTCCTCTTTGCCTTGAA
TCCAGCCAATGGGGAACAGCCGGTCAAGTTTGATATTGTAAAGAAACCAT
ATGCCATTTGCTATCATCCTGATTGCGGTCCCATTTTTGGTGCTGGAGCC
GATCTGCTCATTTCCAGCAACTGTAATACAAACATGGACTCATACTCGAA
TCTTCCGCATTCCTACGACGGAACCAACGCTGCTCACCTGACACTTTTCG
GGGACTATAACTTTACCATCACCGACTATGAGGTCTATACCCTTTCCTCG
CCGGCAGGAAGTAGTAATAGTGGAGCAAATCACAGCAATAATCAGAACCT
GAACCACTCAACAAACGGCCAAGCTCCTGGGGTGCCCACAAAAGCAAAAT
ACGATAGATACGCAAGCTTTCTAGACCAT

BO09171.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:57:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 1548 CG7102-PB 1..1545 17..1561 7710 99.9 Plus
CG7102-RA 1548 CG7102-PA 1..1545 17..1561 7710 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-RB 2264 CG7102-RB 461..2006 16..1561 7715 99.9 Plus
CG7102-RA 2075 CG7102-RA 461..2006 16..1561 7715 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:57:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7883911..7884581 1272..602 3355 100 Minus
2L 23513712 2L 7883540..7883828 1561..1273 1430 99.7 Minus
2L 23513712 2L 7886306..7886472 469..303 835 100 Minus
2L 23513712 2L 7886535..7886698 304..141 820 100 Minus
2L 23513712 2L 7884655..7884791 601..465 685 100 Minus
2L 23513712 2L 7886926..7887053 143..16 640 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:57:01 has no hits.

BO09171.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:55:05 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 431..1982 7..1561 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:57 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 462..2006 17..1563 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:56 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 438..1982 17..1563 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:41:03 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
CG7102-RA 462..2006 17..1563 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:41:03 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7883538..7883828 1273..1563 98 <- Minus
2L 7883911..7884581 602..1272 100 <- Minus
2L 7884655..7884788 468..601 100 <- Minus
2L 7886308..7886470 305..467 100 <- Minus
2L 7886535..7886697 142..304 100 <- Minus
2L 7886928..7887052 17..141 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:57 Download gff for BO09171.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7883538..7883828 1273..1563 98 <- Minus
arm_2L 7883911..7884581 602..1272 100 <- Minus
arm_2L 7884655..7884788 468..601 100 <- Minus
arm_2L 7886308..7886470 305..467 100 <- Minus
arm_2L 7886535..7886697 142..304 100 <- Minus
arm_2L 7886928..7887052 17..141 100   Minus

BO09171.pep Sequence

Translation from 16 to 1579

> BO09171.pep
MSLPQLIEDLQRLSEDQDSADVVFICGRDERIYAHRLMLMARCKSFKTAK
RGEVCRIPGCTVSPAAPGASTPTTIRLPHVNPELFRQFILYVYTAKLVLQ
DSQVFQMMILAQDIGVVELRTACEDHVISTLSVDNACTFLTAVMDIHEKA
GAKCAASFMERCIIYIGENANECVKTNAFLTLTKDAIIKIISSDYFCLEE
EEVWRCVLSWAKYQAGVTQPTAHWTEEERARVCQHLSGVMGHVRLLLIDS
QVFAEEVEPTGAVPMELSLERYRYAALHANKMMDNDKRLQPRLAVAVNMF
PGSQILKNDNLALQTVLNNWVGVGKQSWRLVFRASTHGYDSGAFHRYCDG
VAPCMVIGLGSHGEISGGYTDVAWAKTSRKGGYVQSERAFLFALNPANGE
QPVKFDIVKKPYAICYHPDCGPIFGAGADLLISSNCNTNMDSYSNLPHSY
DGTNAAHLTLFGDYNFTITDYEVYTLSSPAGSSNSGANHSNNQNLNHSTN
GQAPGVPTKAKYDRYASFLDH

BO09171.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7102-PB 515 CG7102-PB 1..515 1..515 2730 100 Plus
CG7102-PA 515 CG7102-PA 1..515 1..515 2730 100 Plus
BTBD9-PB 722 CG1826-PB 35..260 9..270 198 24.1 Plus
BTBD9-PA 722 CG1826-PA 35..260 9..270 198 24.1 Plus
gprs-PF 367 CG18471-PF 26..326 6..290 176 20.8 Plus