Clone Sequence Records
BO09172.3prime Sequence
930 bp (827 high quality bases) assembled on 2006-01-11
> BO09172.3prime
ATGGTCTAGAAAGCTTGCTTCACTTCGTCCAATTGTCTGTCTGATTACTT
TTTTGAGCTGCTCATGCCAGAGAAGGAAGCAGGGTTCCTGGCATAGACCC
GGCTTATCGGGACAGGTGTTGCACATGTACCTGCTGAACTGCAGCATTCC
GCCTTTGTGGCAATAGCGGCAGTTTTTCTTGGCCGGCTTCCCGTTCTGCT
GGATAAGCATGGGTTCGTGTAGAATGGTCTTCAACCTGGGCTCGGGCACC
GGCTTGTTCTTTGACCGTTCATATGTCTCTGGCTTCTGGATACTAGTTAC
CGGTTCGTTCGTCACTTCTTCTCTTAGAAGCGACTTTATGATGATCACCC
GGAACTCCGAGTAACTTTTAAGATGTCCGACTCGCGCATTCTGGCCATTA
GCAAAGTATAGCAAATAGGCATTGTACACGAGGATGTTGAGTAGGAAAAT
GGTCAACTTTATGTTTGCCTTCAGCTCCTTGCAGGCAGCTTGGTAGTGGA
TCAGGTGGTGGCGACCGTCGTTTCCAGGTCGTAGTTGAAACTCGAGCTCC
TGGATCAACTTAGGTTTTGCATTTGTCTTTTGCATGGCCATCTCCTTGGA
ATAAATGGCCAAGCAGTCAGAGCTGAAGCAGTACAAGCTCTTTGCCCGTC
GTCGCCATTTGGCCATCATCAGAGAAGTGGCATAGCTGGTGGAGATGCTG
TTGGAATCCAACCGCTGGTGCACCAGTGCCTTACTGTTGCCATATCTATT
CCTGTCCAGCAGACCAGTGCAATAGGTGCTTTTCTTGGCCAACTCCTGAG
CCAGGCCGTAGCTTCCATAGAACTTTGAGGTGTACACAGTGCGTCCTCCA
TGGTAACCCTCCATTAGTTTCAGGACAATCTTGTTTCGGTGCTCCACAAC
TGCCGGGAATTGCGTACCCCTGCCCGGGCG
BO09172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PA | 1869 | CG9839-RA | 988..1866 | 897..19 | 4395 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 1183..2089 | 924..19 | 4495 | 99.8 | Minus |
| CG9839-RA | 2064 | CG9839-RA | 1061..1967 | 924..19 | 4495 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8803568..8804474 | 19..924 | 4470 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:08:38 has no hits.
BO09172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:54 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 954..1869 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:04 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 954..1869 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:39:56 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1055..1970 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:12:33 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1055..1970 | 15..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:12:33 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8803564..8804480 | 15..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:39:56 Download gff for
BO09172.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4629286..4630202 | 15..930 | 99 | | Plus |
BO09172.5prime Sequence
877 bp (785 high quality bases) assembled on 2006-01-11
> BO09172.5prime
GAAGTTATCAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAAGCAGCAAC
TTAAGCCGCGTCAGGACGATCACCGGTCGCCGGTGAAGCGACGCAGTGTG
GACATCAAGTCGGAACCCTTGGACGGCTATCCGGCGCTAGCAGACTACGA
TTTAAGTACGGCCGATATCAAGCCGGATCTCACTGAACTCCAATTGCAGC
TGGTGGCGGAGCAGCAGGCGGCCAGCAACACCATTCGCTTGGAATTGGAA
CAGCAAGAGAGTGATTCCGACGAGGATGGCTACTCAGAGCTCGATTACCA
AGCTGAAGATGTCTTCTGTCAGGACGATATGGATGACTACGATCCAGATT
GGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTTCAAATTTCCCATCCAG
CAGAGTGGCCTGAAATTCGGACAACGCTTCCAGGGACCACAGCACTACTT
CAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCTGGCCCAAA
GCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAA
GAAATGGAAATCTTTATGGCGCTTTCCCTGCTTATGTGTGACCTGAAGCT
GGAGCACCTATCGGATTACTGGAGCACTAACATGTTTTACGGTCTCGTCG
GATTCTCTGGGAAGATTCCTCTGGAACGGTATCAGCAGCTGCTGCACTGC
CTTAACTTTGATGCACCGCAGCTACAAGCGGGCAGAGCCAAAGTGAAGAA
CTCTCTACTGCTAGACTTTATCAACGAGCGTATGGAAGAGATATACATTT
GTGGCCAGCAACTGGTGCTCAATGAACCTATCACTCTGTGGAAGGGTGCA
TTAAGATACCAGGATGAACTTCCAAAC
BO09172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:36:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PA | 1869 | CG9839-RA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..1084 | 13..877 | 4310 | 99.9 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..962 | 13..877 | 4310 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8804573..8805127 | 877..323 | 2775 | 100 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 323..13 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:51:11 has no hits.
BO09172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:03:55 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:06 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-PA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:27 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..962 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:12:48 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 94..962 | 9..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:12:48 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8805192..8805506 | 9..323 | 99 | | Minus |
| 3R | 8804573..8805126 | 324..877 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:27 Download gff for
BO09172.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4630295..4630848 | 324..877 | 100 | <- | Minus |
| arm_3R | 4630914..4631228 | 9..323 | 99 | | Minus |
BO09172.complete Sequence
1900 bp (1900 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631420
> BO09172.complete
GAAGTTATCAGTCGACATGTCCAGCTCCGGAAGAAAGCGCAAGCAGCAAC
TTAAGCCGCGTCAGGACGATCACCGGTCGCCGGTGAAGCGACGCAGTGTG
GACATCAAGTCGGAACCCTTGGACGGCTATCCGGCGCTAGCAGACTACGA
TTTAAGTACGGCCGATATCAAGCCGGATCTCACTGAACTCCAATTGCAGC
TGGTGGCGGAGCAGCAGGCGGCCAGCAACACCATTCGCTTGGAATTGGAA
CAGCAAGAGAGTGATTCCGACGAGGATGGCTACTCAGAGCTCGATTACCA
AGCTGAAGATGTCTTCTGTCAGGACGATATGGATGACTACGATCCAGATT
GGTCCAGCCAGCAGACGGGTTCCCGACTGCTCTTCAAATTTCCCATCCAG
CAGAGTGGCCTGAAATTCGGACAACGCTTCCAGGGACCACAGCACTACTT
CAACCAAGTGCTGGGAAATCGCTCCAAGTTCTTCAGTTCCCTGGCCCAAA
GCTGCAACCTAAAGGGAGGAGAGCTCAAGTCCAATCCCACAACTGCCGAA
GAAATGGAAATCTTTATGGCGCTTTCCCTGCTTATGTGTGACCTGAAGCT
GGAGCACCTATCGGATTACTGGAGCACTAACATGTTTTACGGTCTCGTCG
GATTCTCTGGGAAGATTCCTCTGGAACGGTATCAGCAGCTGCTGCACTGC
CTTAACTTTGATGCACCGCAGCTACAAGCGGGCAGAGCCAAAGTGAAGAA
CTCTCTACTGCTAGACTTTATCAACGAGCGTATGGAAGAGATATACATTT
GTGGCCAGCAACTGGTGCTCAATGAACCTATCACTCTGTGGAAGGGTGCA
TTAAGATACCAGGATGAACTTCCAAACAAATTCCGCACCAACGCACTACT
GCTGCATATGCTAACTGAGCAGAGCGGTTTGGTGGTGAAGATTCTACCGG
AGATTGTGCGGAAGGAAGACGCACCGGCATGGGTACGCAATTCCCGGCAG
TTGGTGGAGCACCGAAACAAGATTGTCCTGAAACTAATGGAGGGTTACCA
TGGAGGACGCACTGTGTACACCTCAAAGTTCTATGGAAGCTACGGCCTGG
CTCAGGAGTTGGCCAAGAAAAGCACCTATTGCACTGGTCTGCTGGACAGG
AATAGATATGGCAACAGTAAGGCACTGGTGCACCAGCGGTTGGATTCCAA
CAGCATCTCCACCAGCTATGCCACTTCTCTGATGATGGCCAAATGGCGAC
GACGGGCAAAGAGCTTGTACTGCTTCAGCTCTGACTGCTTGGCCATTTAT
TCCAAGGAGATGGCCATGCAAAAGACAAATGCAAAACCTAAGTTGATCCA
GGAGCTCGAGTTTCAACTACGACCTGGAAACGACGGTCGCCACCACCTGA
TCCACTACCAAGCTGCCTGCAAGGAGCTGAAGGCAAACATAAAGTTGACC
ATTTTCCTACTCAACATCCTCGTGTACAATGCCTATTTGCTATACTTTGC
TAATGGCCAGAATGCGCGAGTCGGACATCTTAAAAGTTACTCGGAGTTCC
GGGTGATCATCATAAAGTCGCTTCTAAGAGAAGAAGTGACGAACGAACCG
GTAACTAGTATCCAGAAGCCAGAGACATATGAACGGTCAAAGAACAAGCC
GGTGCCCGAGCCCAGGTTGAAGACCATTCTACACGAACCCATGCTTATCC
AGCAGAACGGGAAGCCGGCCAAGAAAAACTGCCGCTATTGCCACAAAGGC
GGAATGCTGCAGTTCAGCAGGTACATGTGCAACACCTGTCCCGATAAGCC
GGGTCTATGCCAGGAACCCTGCTTCCTTCTCTGGCATGAGCAGCTCAAAA
AAGTAATCAGACAGACAATTGGACGAAGTGAAGCAAGCTTTCTAGACCAT
BO09172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 1869 | CG9839-PB | 1..1866 | 17..1882 | 9330 | 100 | Plus |
| CG9839-RA | 1869 | CG9839-PA | 1..1866 | 17..1882 | 9330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-RB | 2186 | CG9839-RB | 220..2089 | 13..1882 | 9335 | 99.9 | Plus |
| CG9839-RA | 2064 | CG9839-RA | 98..1967 | 13..1882 | 9335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8803568..8805127 | 1882..323 | 7800 | 100 | Minus |
| 3R | 32079331 | 3R | 8805192..8805502 | 323..13 | 1540 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:32:45 has no hits.
BO09172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:20 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 1..1869 | 17..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:20 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 125..2001 | 9..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:46:02 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 102..1967 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:20 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 125..2001 | 9..1886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:14:01 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9839-RA | 102..1967 | 17..1884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:14:01 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8803566..8805126 | 324..1884 | 99 | <- | Minus |
| 3R | 8805192..8805498 | 17..323 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:46:02 Download gff for
BO09172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4629288..4630848 | 324..1884 | 99 | <- | Minus |
| arm_3R | 4630914..4631220 | 17..323 | 100 | | Minus |
BO09172.pep Sequence
Translation from 16 to 1900
> BO09172.pep
MSSSGRKRKQQLKPRQDDHRSPVKRRSVDIKSEPLDGYPALADYDLSTAD
IKPDLTELQLQLVAEQQAASNTIRLELEQQESDSDEDGYSELDYQAEDVF
CQDDMDDYDPDWSSQQTGSRLLFKFPIQQSGLKFGQRFQGPQHYFNQVLG
NRSKFFSSLAQSCNLKGGELKSNPTTAEEMEIFMALSLLMCDLKLEHLSD
YWSTNMFYGLVGFSGKIPLERYQQLLHCLNFDAPQLQAGRAKVKNSLLLD
FINERMEEIYICGQQLVLNEPITLWKGALRYQDELPNKFRTNALLLHMLT
EQSGLVVKILPEIVRKEDAPAWVRNSRQLVEHRNKIVLKLMEGYHGGRTV
YTSKFYGSYGLAQELAKKSTYCTGLLDRNRYGNSKALVHQRLDSNSISTS
YATSLMMAKWRRRAKSLYCFSSDCLAIYSKEMAMQKTNAKPKLIQELEFQ
LRPGNDGRHHLIHYQAACKELKANIKLTIFLLNILVYNAYLLYFANGQNA
RVGHLKSYSEFRVIIIKSLLREEVTNEPVTSIQKPETYERSKNKPVPEPR
LKTILHEPMLIQQNGKPAKKNCRYCHKGGMLQFSRYMCNTCPDKPGLCQE
PCFLLWHEQLKKVIRQTIGRSEASFLDH
BO09172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9839-PB | 622 | CG9839-PB | 1..622 | 1..622 | 3266 | 100 | Plus |
| CG9839-PA | 622 | CG9839-PA | 1..622 | 1..622 | 3266 | 100 | Plus |
