Clone Sequence Records
BO09175.3prime Sequence
863 bp (860 high quality bases) assembled on 2006-01-11
> BO09175.3prime
ATGGTCTAGAAAGCTTGCGCTCTCCCAGACTTCGTCCCGCTGTTTGGCAG
CTAGCAGTTTGCGTTCTTTGGCTTCACGTAGTACCCGCCTCTCGTTCTCC
CGTTCCTGCGGCGCCGTGGGCAGCTTGACTCCCAGTGCACCCGATACCAG
TCGTCGGGCCAAGGCCGTGCAGGTTTCCGGACGCTGGCGATAGGGCTGCA
TTGACACCGCGCCGGCCTTCTTTGCCTTCAGTCGTGACTCCAGAGTGGCT
TCCGCAAGTGGCTTCAACTTGACAAACGGATGCCCCATCGTCAGCACCTC
AGCAGCAATGCGGGAACTGCTGAACACAGCCAGGGCATGGGTATCGTCTA
CCCACTTGATGTCGAAACCACTGCCCCTGTACTGGGCGAAAAGCATGAGC
AGGTCGGGAGTTTTGAACTCCACTGGGAAATTGGACACCTCCAGAACGTG
CGGAAATTCCTCTTCGTTGAGCAGTTGTTGTTTAATGTGAAAGACCGTAT
AGTCCATTTTGGGCAGCTCTATTTTGCACTTGCCCACGGATTCAGTCAGT
TCTTGGAGTAACTTGGGATCCAGACAGTCGCCGCTCTCGTCGAACATCTT
CTCCCAGTCGTCCTCGTCCTCCTCGTCATCGTCTTCGGTGGTGCTGTCTA
CAGGTGGTTTCGCTGTGGCTGATGCTTGCGGGGATGTGGGGATGGCCTTT
GTTGCCGATGTCTCTATTTTCTCGGGAATCTCCAGCACATCTGAGTTGAA
GGTTTGTTTCATGATGCGCCGATTGCTGCGATTGATTTCCTTTGAGGCTC
GCTGCAGCTCGCGCACATCGTTATCACATTTGGCCGGCTCCTCGCCATTG
GTGCTCCTGGCCG
BO09175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PA | 1608 | CG2162-RA | 761..1605 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:30:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RF | 1669 | CG2162-RF | 329..1173 | 863..19 | 4225 | 100 | Minus |
| CG2162-RE | 2580 | CG2162-RE | 1240..2084 | 863..19 | 4225 | 100 | Minus |
| CG2162-RA | 2580 | CG2162-RA | 1240..2084 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:30:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038962..3039259 | 791..494 | 1490 | 100 | Minus |
| 3L | 28110227 | 3L | 3039578..3039818 | 306..66 | 1205 | 100 | Minus |
| 3L | 28110227 | 3L | 3039325..3039515 | 496..306 | 955 | 100 | Minus |
| 3L | 28110227 | 3L | 3038832..3038906 | 863..789 | 375 | 100 | Minus |
| 3L | 28110227 | 3L | 3039925..3039973 | 67..19 | 245 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 2328..2365 | 662..625 | 109 | 76.3 | Minus |
BO09175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:00 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 761..1608 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:14 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 761..1608 | 18..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:00:24 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 1169..2013 | 19..863 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:09:04 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 1240..2084 | 19..863 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:09:04 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3038964..3039257 | 496..789 | 100 | -> | Minus |
| 3L | 3039326..3039515 | 306..495 | 100 | -> | Minus |
| 3L | 3039579..3039818 | 66..305 | 100 | -> | Minus |
| 3L | 3039927..3039973 | 19..65 | 100 | | Minus |
| 3L | 3038832..3038905 | 790..863 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:00:24 Download gff for
BO09175.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3038832..3038905 | 790..863 | 100 | -> | Minus |
| arm_3L | 3038964..3039257 | 496..789 | 100 | -> | Minus |
| arm_3L | 3039326..3039515 | 306..495 | 100 | -> | Minus |
| arm_3L | 3039579..3039818 | 66..305 | 100 | -> | Minus |
| arm_3L | 3039927..3039973 | 19..65 | 100 | | Minus |
BO09175.5prime Sequence
844 bp (802 high quality bases) assembled on 2006-01-10
> BO09175.5prime
GAAGTTATCAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCAT
TAAGCAAATCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAAC
AATAGCAATAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGA
AGCTATAACAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAA
GTCCTACCTCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCA
GCAGCGGCGGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTA
TGTGCCAAGGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAA
CAACAACGGCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCA
GCAGCAGCGGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCC
AGTTGCAGATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGC
CGTCCAAGTCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCA
AAGAAAACGACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTAT
ATCAGCATCTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAA
AGCCAGCGGACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAG
CCAGGCAATGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCC
TCCGCTGCGCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGG
AGCCGGCCAAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCC
BO09175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PA | 1608 | CG2162-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
| CG3619-PA | 2502 | Dl-RA | 2083..2109 | 239..265 | 135 | 100 | Plus |
| CG3619-PB | 2502 | Dl-RB | 2083..2109 | 239..265 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..1307 | 17..844 | 4140 | 100 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..1307 | 17..844 | 4140 | 100 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..396 | 449..844 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 227..673 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 51..228 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 3038727..3038899 | 672..844 | 865 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 09:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 72..438 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 98..391 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 53..431 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 325..464 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6955 | 345..578 | 224 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 87..403 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 325..497 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 325..435 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 72..261 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 98..409 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 275..457 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 130..435 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 325..593 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 363..573 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 224..474 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 325..537 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 157..492 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 99..268 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 351..435 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 325..578 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 152..407 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 95..186 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 92..209 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 325..408 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 338..435 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 331..408 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 323..424 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 341..445 | 144 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6413..6820 | 339..741 | 141 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2377 | 133..199 | 137 | 67.2 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 359..424 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 330..449 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 325..377 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 343..407 | 118 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6923 | 382..576 | 116 | 54.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 348..408 | 115 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6447..6591 | 92..230 | 114 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 380..463 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 95..143 | 114 | 73.5 | Plus |
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 554..629 | 325..400 | 110 | 60.5 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2636..2702 | 99..165 | 109 | 66.2 | Plus |
BO09175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:01 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:16 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:18 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 401..1236 | 8..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:27 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 472..1307 | 8..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:27 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| 3L | 3038729..3038899 | 674..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:18 Download gff for
BO09175.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3038729..3038899 | 674..844 | 100 | | Plus |
| arm_3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
BO09175.complete Sequence
1639 bp (1639 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631421
> BO09175.complete
GAAGTTATCAGTCGACATGGGCGTTAAGAAGCATATCAGCGAGACTCCAT
TAAGCAAATCGAATTCGGTGGATTTATACAGGCCGCCAGCGTTGAGGAAC
AATAGCAATAACAACAACAGCAGCAGCGAGGAAGCAGCTGCAGTAAACGA
AGCTATAACAACACCATTAGCTGCAGGAACAGCAACCACTGCATCTACAA
GTCCTACCTCCAAAGAATCCCCAAACAGAGAGGCGGACGCCTCAGCAGCA
GCAGCGGCGGCGGCGACACGACGTGAACGCCGTCCCGATCGAGCGGTTTA
TGTGCCAAGGGCACGACGCAGTCAAACTACACCACCGACTACTACAACAA
CAACAACGGCGGCGGCAGCGACAGCGGTTGCAACAACATCACCACCAGCA
GCAGCAGCGGTGGTCGCAGCAACAATTACAACAGCGCCGGATTCCCCGCC
AGTTGCAGATACACAGCCGAGCAAAGCGGACGACGTCAACGGTCAGCCGC
CGTCCAAGTCGAAGAAAAGCAAATCGCATCGGGAGCGCAGAGAACGCGCA
AAGAAAACGACAACAGCTACAACGGCCGATAACGCCACTGTACTGGTTAT
ATCAGCATCTGAGAACGATACTCAATCCAACGAAGAACACCGACCGGCAA
AGCCAGCGGACTGTGATAAGGAGATCATGAGCGGCGCCCAGCGTACAAAG
CCAGGCAATGGCAACAAATCAGCCAGCAATGGCAAAAGCCAGGCATCGCC
TCCGCTGCGCATCGAGGATGTGGTGGCGGCCAGGAGCACCAATGGCGAGG
AGCCGGCCAAATGTGATAACGATGTGCGCGAGCTGCAGCGAGCCTCAAAG
GAAATCAATCGCAGCAATCGGCGCATCATGAAACAAACCTTCAACTCAGA
TGTGCTGGAGATTCCCGAGAAAATAGAGACATCGGCAACAAAGGCCATCC
CCACATCCCCGCAAGCATCAGCCACAGCGAAACCACCTGTAGACAGCACC
ACCGAAGACGATGACGAGGAGGACGAGGACGACTGGGAGAAGATGTTCGA
CGAGAGCGGCGACTGTCTGGATCCCAAGTTACTCCAAGAACTGACTGAAT
CCGTGGGCAAGTGCAAAATAGAGCTGCCCAAAATGGACTATACGGTCTTT
CACATTAAACAACAACTGCTCAACGAAGAGGAATTTCCGCACGTTCTGGA
GGTGTCCAATTTCCCAGTGGAGTTCAAAACTCCCGACCTGCTCATGCTTT
TCGCCCAGTACAGGGGCAGTGGTTTCGACATCAAGTGGGTAGACGATACC
CATGCCCTGGCTGTGTTCAGCAGTTCCCGCATTGCTGCTGAGGTGCTGAC
GATGGGGCATCCGTTTGTCAAGTTGAAGCCACTTGCGGAAGCCACTCTGG
AGTCACGACTGAAGGCAAAGAAGGCCGGCGCGGTGTCAATGCAGCCCTAT
CGCCAGCGTCCGGAAACCTGCACGGCCTTGGCCCGACGACTGGTATCGGG
TGCACTGGGAGTCAAGCTGCCCACGGCGCCGCAGGAACGGGAGAACGAGA
GGCGGGTACTACGTGAAGCCAAAGAACGCAAACTGCTAGCTGCCAAACAG
CGGGACGAAGTCTGGGAGAGCGCAAGCTTTCTAGACCAT
BO09175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 1989 | CG2162-PE | 382..1986 | 17..1621 | 8025 | 100 | Plus |
| CG2162-RA | 1608 | CG2162-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| CG2162-RF | 948 | CG2162-PF | 1..945 | 677..1621 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-RE | 2580 | CG2162-RE | 480..2084 | 17..1621 | 8025 | 100 | Plus |
| CG2162-RA | 2580 | CG2162-RA | 480..2084 | 17..1621 | 8025 | 100 | Plus |
| CG2162-RF | 1669 | CG2162-RF | 1..1173 | 449..1621 | 5865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3038121..3038567 | 227..673 | 2235 | 100 | Plus |
| 3L | 28110227 | 3L | 3038962..3039259 | 849..1146 | 1490 | 100 | Plus |
| 3L | 28110227 | 3L | 3039578..3039818 | 1334..1574 | 1205 | 100 | Plus |
| 3L | 28110227 | 3L | 3039325..3039515 | 1144..1334 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 3038727..3038906 | 672..851 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 3037784..3037961 | 51..228 | 890 | 100 | Plus |
| 3L | 28110227 | 3L | 3039925..3039973 | 1573..1621 | 245 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..7091 | 72..438 | 288 | 56.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2389..2665 | 98..391 | 286 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2276..2666 | 53..431 | 274 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6862 | 325..464 | 243 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6955 | 345..578 | 224 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2243..2539 | 87..403 | 214 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2425..2535 | 325..435 | 213 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2484 | 325..497 | 213 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6685..6878 | 72..261 | 212 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7089 | 98..409 | 212 | 53.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6689..6870 | 275..457 | 210 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2898 | 130..435 | 208 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6774..7046 | 325..593 | 200 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6923 | 363..573 | 195 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2297..2550 | 224..474 | 191 | 53.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6840..7056 | 325..537 | 191 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..7057 | 157..492 | 189 | 54.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2804..2971 | 99..268 | 188 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 351..435 | 182 | 68.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2383..2639 | 325..578 | 178 | 55.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6707..6952 | 152..407 | 176 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6822..6911 | 95..186 | 175 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2782..2894 | 92..209 | 173 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2421 | 325..408 | 168 | 66.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2011..2108 | 338..435 | 166 | 63.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1071..1148 | 331..408 | 156 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1498..1585 | 323..424 | 154 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3236..3346 | 341..445 | 144 | 63.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 11057..11126 | 359..424 | 134 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2898..3012 | 330..449 | 129 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3292..3344 | 325..377 | 121 | 69.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2052..2116 | 343..407 | 118 | 64.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6033..6093 | 348..408 | 115 | 69.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1149 | 380..463 | 114 | 59.5 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 819..865 | 95..143 | 114 | 73.5 | Plus |
BO09175.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:48 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 1..1608 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:43 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 401..2013 | 8..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:52 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RB | 409..2013 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:48 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 470..2082 | 8..1621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:16 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2162-RA | 480..2084 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:16 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3039326..3039515 | 1145..1334 | 100 | -> | Plus |
| 3L | 3039579..3039818 | 1335..1574 | 100 | -> | Plus |
| 3L | 3038964..3039257 | 851..1144 | 100 | -> | Plus |
| 3L | 3039927..3039973 | 1575..1623 | 95 | | Plus |
| 3L | 3036868..3036901 | 17..50 | 100 | -> | Plus |
| 3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| 3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| 3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:52 Download gff for
BO09175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3037784..3037961 | 51..228 | 100 | -> | Plus |
| arm_3L | 3038123..3038567 | 229..673 | 100 | -> | Plus |
| arm_3L | 3038729..3038905 | 674..850 | 100 | -> | Plus |
| arm_3L | 3036868..3036901 | 17..50 | 100 | -> | Plus |
| arm_3L | 3038964..3039257 | 851..1144 | 100 | -> | Plus |
| arm_3L | 3039326..3039515 | 1145..1334 | 100 | -> | Plus |
| arm_3L | 3039579..3039818 | 1335..1574 | 100 | -> | Plus |
| arm_3L | 3039927..3039973 | 1575..1623 | 95 | | Plus |
BO09175.pep Sequence
Translation from 16 to 1639
> BO09175.pep
MGVKKHISETPLSKSNSVDLYRPPALRNNSNNNNSSSEEAAAVNEAITTP
LAAGTATTASTSPTSKESPNREADASAAAAAAATRRERRPDRAVYVPRAR
RSQTTPPTTTTTTTAAAATAVATTSPPAAAAVVAATITTAPDSPPVADTQ
PSKADDVNGQPPSKSKKSKSHRERRERAKKTTTATTADNATVLVISASEN
DTQSNEEHRPAKPADCDKEIMSGAQRTKPGNGNKSASNGKSQASPPLRIE
DVVAARSTNGEEPAKCDNDVRELQRASKEINRSNRRIMKQTFNSDVLEIP
EKIETSATKAIPTSPQASATAKPPVDSTTEDDDEEDEDDWEKMFDESGDC
LDPKLLQELTESVGKCKIELPKMDYTVFHIKQQLLNEEEFPHVLEVSNFP
VEFKTPDLLMLFAQYRGSGFDIKWVDDTHALAVFSSSRIAAEVLTMGHPF
VKLKPLAEATLESRLKAKKAGAVSMQPYRQRPETCTALARRLVSGALGVK
LPTAPQERENERRVLREAKERKLLAAKQRDEVWESASFLDH
BO09175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2162-PE | 662 | CG2162-PE | 128..662 | 1..535 | 2708 | 100 | Plus |
| CG2162-PA | 535 | CG2162-PA | 1..535 | 1..535 | 2708 | 100 | Plus |
| CG2162-PF | 315 | CG2162-PF | 1..315 | 221..535 | 1612 | 100 | Plus |
| mamo-PC | 799 | CG45477-PC | 148..457 | 33..339 | 164 | 23.9 | Plus |
| mamo-PD | 1087 | CG45477-PD | 148..457 | 33..339 | 164 | 23.9 | Plus |
