Clone Sequence Records
BO09177.3prime Sequence
689 bp (688 high quality bases) assembled on 2006-01-11
> BO09177.3prime
ATGGTCTAGAAAGCTTGCAGAGGCAAAATCGAGGCTCACAGTTTGGCAGG
AGTCGCCCACTGTTCCACTGGAGCCGGCTGAGGTAGCATTCCGCTTGAGC
GTTGGCCCCTCATCGTAGCGAATCGTCATGGAGTTGGAGTTTCCGGGAAT
GGCCACATAGCCCAGCGACTCATAGAACTTGATCAGCTTGTCCTTGCAGT
CCAGCGACATTTTGTAGCAGCCCAGTTCCTCGGCCAGCAGCGATACGGTG
ACCACGATCAGTTTTCCCAGTTGCTTCCCGCGATACGTGTCATTGACCAC
CACATCCTCTAGACGGCCACGCACAGCACAGTTATGGATGAACTTGCGCT
CGATCACCAAGGATGCAGCTCCAATAATCTCATTCTTGCGAGTGTCCTCA
ATGACGGTGACAAAGTAGTCCCCACTGGCTTTCATCTGCGAAAAGCGGGT
CAAGAACTGCGTACGATTCACATTGCCGACATGGGTGAGTTGCGAGAGCA
GCTGCAGGAATCCACGATCGTAGTCGGTGTCCTTGAGAGGACGCACTTTC
ATCCAGGGCTCGCCGGGATTGGCCGCCGATATGAAGGGCTTAAAGTTGGC
GGGACTGCGATGAAAGTCCAGCTTTAGCAGCAGATTAGGATCGTACAGAT
ATGTCTCCTCCGTAAGTTGCACCATGTCGACTGATAACT
BO09177.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 660 | CG1969-RA | 1..657 | 675..19 | 3285 | 100 | Minus |
CG1969-PB | 648 | CG1969-RB | 3..645 | 661..19 | 3215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..711 | 675..19 | 3285 | 100 | Minus |
CG1969-RF | 1341 | CG1969-RF | 137..779 | 661..19 | 3215 | 100 | Minus |
CG1969-RH | 1261 | CG1969-RH | 57..699 | 661..19 | 3215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741390 | 259..19 | 1205 | 100 | Minus |
3R | 32079331 | 3R | 29740567..29740778 | 661..450 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 29740840..29740967 | 449..322 | 640 | 100 | Minus |
3R | 32079331 | 3R | 29741028..29741091 | 322..259 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 09:17:05 has no hits.
BO09177.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:04 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:20 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 16..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:41 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 11..675 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:59:44 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 11..675 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:59:44 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740568..29740778 | 450..660 | 100 | -> | Minus |
3R | 29740840..29740967 | 322..449 | 100 | -> | Minus |
3R | 29741029..29741090 | 260..321 | 100 | -> | Minus |
3R | 29741150..29741398 | 11..259 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:41 Download gff for
BO09177.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566562..25566689 | 322..449 | 100 | -> | Minus |
arm_3R | 25566751..25566812 | 260..321 | 100 | -> | Minus |
arm_3R | 25566290..25566500 | 450..660 | 100 | -> | Minus |
arm_3R | 25566872..25567120 | 11..259 | 98 | | Minus |
BO09177.5prime Sequence
689 bp (688 high quality bases) assembled on 2006-01-11
> BO09177.5prime
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTGCAAGCTTTCTAGACC
BO09177.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 660 | CG1969-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG1969-PB | 648 | CG1969-RB | 3..645 | 31..673 | 3215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..711 | 17..673 | 3285 | 100 | Plus |
CG1969-RF | 1341 | CG1969-RF | 137..779 | 31..673 | 3215 | 100 | Plus |
CG1969-RH | 1261 | CG1969-RH | 57..699 | 31..673 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741390 | 433..673 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 29740567..29740778 | 31..242 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 29740840..29740967 | 243..370 | 640 | 100 | Plus |
3R | 32079331 | 3R | 29741028..29741091 | 370..433 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:44:38 has no hits.
BO09177.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:05 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:21 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-PA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:32 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:28 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..719 | 17..681 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:28 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740840..29740967 | 243..370 | 100 | -> | Plus |
3R | 29741029..29741090 | 371..432 | 100 | -> | Plus |
3R | 29741150..29741398 | 433..681 | 98 | | Plus |
3R | 29740568..29740778 | 32..242 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:32 Download gff for
BO09177.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566290..25566500 | 32..242 | 100 | -> | Plus |
arm_3R | 25566562..25566689 | 243..370 | 100 | -> | Plus |
arm_3R | 25566751..25566812 | 371..432 | 100 | -> | Plus |
arm_3R | 25566872..25567120 | 433..681 | 98 | | Plus |
BO09177.complete Sequence
691 bp (691 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631422
> BO09177.complete
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTGCAAGCTTTCTAGACCAT
BO09177.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 660 | CG1969-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
CG1969-RF | 687 | CG1969-PF | 3..645 | 31..673 | 3215 | 100 | Plus |
CG1969-RH | 648 | CG1969-PH | 3..645 | 31..673 | 3215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-RA | 1273 | CG1969-RA | 55..711 | 17..673 | 3285 | 100 | Plus |
CG1969-RF | 1341 | CG1969-RF | 137..779 | 31..673 | 3215 | 100 | Plus |
CG1969-RH | 1261 | CG1969-RH | 57..699 | 31..673 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29741150..29741390 | 433..673 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 29740567..29740778 | 31..242 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 29740840..29740967 | 243..370 | 640 | 100 | Plus |
3R | 32079331 | 3R | 29741028..29741091 | 370..433 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:59:08 has no hits.
BO09177.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:24 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 1..660 | 17..676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:29 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 36..700 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:25 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..711 | 17..675 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:24 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 36..700 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:19 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1969-RA | 55..711 | 17..675 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:19 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29740568..29740778 | 32..242 | 100 | -> | Plus |
3R | 29740840..29740967 | 243..370 | 100 | -> | Plus |
3R | 29741029..29741090 | 371..432 | 100 | -> | Plus |
3R | 29741150..29741390 | 433..675 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:25 Download gff for
BO09177.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25566290..25566500 | 32..242 | 100 | -> | Plus |
arm_3R | 25566562..25566689 | 243..370 | 100 | -> | Plus |
arm_3R | 25566751..25566812 | 371..432 | 100 | -> | Plus |
arm_3R | 25566872..25567112 | 433..675 | 99 | | Plus |
BO09177.pep Sequence
Translation from 16 to 691
> BO09177.pep
MVQLTEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDT
DYDRGFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEI
IGAASLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEE
LGCYKMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSA
GSSGTVGDSCQTVSLDFASASFLDH
BO09177.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1969-PA | 219 | CG1969-PA | 1..219 | 1..219 | 1130 | 100 | Plus |
CG1969-PH | 215 | CG1969-PH | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PG | 215 | CG1969-PG | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PB | 215 | CG1969-PB | 2..215 | 6..219 | 1107 | 100 | Plus |
CG1969-PF | 228 | CG1969-PF | 2..215 | 6..219 | 1107 | 100 | Plus |