Clone BO09177 Report

Search the DGRC for BO09177

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG1969-RA
Protein status:BO09177.pep: validated full length
Sequenced Size:691

Clone Sequence Records

BO09177.3prime Sequence

689 bp (688 high quality bases) assembled on 2006-01-11

> BO09177.3prime
ATGGTCTAGAAAGCTTGCAGAGGCAAAATCGAGGCTCACAGTTTGGCAGG
AGTCGCCCACTGTTCCACTGGAGCCGGCTGAGGTAGCATTCCGCTTGAGC
GTTGGCCCCTCATCGTAGCGAATCGTCATGGAGTTGGAGTTTCCGGGAAT
GGCCACATAGCCCAGCGACTCATAGAACTTGATCAGCTTGTCCTTGCAGT
CCAGCGACATTTTGTAGCAGCCCAGTTCCTCGGCCAGCAGCGATACGGTG
ACCACGATCAGTTTTCCCAGTTGCTTCCCGCGATACGTGTCATTGACCAC
CACATCCTCTAGACGGCCACGCACAGCACAGTTATGGATGAACTTGCGCT
CGATCACCAAGGATGCAGCTCCAATAATCTCATTCTTGCGAGTGTCCTCA
ATGACGGTGACAAAGTAGTCCCCACTGGCTTTCATCTGCGAAAAGCGGGT
CAAGAACTGCGTACGATTCACATTGCCGACATGGGTGAGTTGCGAGAGCA
GCTGCAGGAATCCACGATCGTAGTCGGTGTCCTTGAGAGGACGCACTTTC
ATCCAGGGCTCGCCGGGATTGGCCGCCGATATGAAGGGCTTAAAGTTGGC
GGGACTGCGATGAAAGTCCAGCTTTAGCAGCAGATTAGGATCGTACAGAT
ATGTCTCCTCCGTAAGTTGCACCATGTCGACTGATAACT

BO09177.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 660 CG1969-RA 1..657 675..19 3285 100 Minus
CG1969-PB 648 CG1969-RB 3..645 661..19 3215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..711 675..19 3285 100 Minus
CG1969-RF 1341 CG1969-RF 137..779 661..19 3215 100 Minus
CG1969-RH 1261 CG1969-RH 57..699 661..19 3215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 09:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741390 259..19 1205 100 Minus
3R 32079331 3R 29740567..29740778 661..450 1060 100 Minus
3R 32079331 3R 29740840..29740967 449..322 640 100 Minus
3R 32079331 3R 29741028..29741091 322..259 320 100 Minus
Blast to na_te.dros performed on 2015-02-03 09:17:05 has no hits.

BO09177.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:04 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 16..675 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:20 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 16..675 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:45:41 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 11..675 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:59:44 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 11..675 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:59:44 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 450..660 100 -> Minus
3R 29740840..29740967 322..449 100 -> Minus
3R 29741029..29741090 260..321 100 -> Minus
3R 29741150..29741398 11..259 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:45:41 Download gff for BO09177.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566562..25566689 322..449 100 -> Minus
arm_3R 25566751..25566812 260..321 100 -> Minus
arm_3R 25566290..25566500 450..660 100 -> Minus
arm_3R 25566872..25567120 11..259 98   Minus

BO09177.5prime Sequence

689 bp (688 high quality bases) assembled on 2006-01-11

> BO09177.5prime
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTGCAAGCTTTCTAGACC

BO09177.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 660 CG1969-RA 1..657 17..673 3285 100 Plus
CG1969-PB 648 CG1969-RB 3..645 31..673 3215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..711 17..673 3285 100 Plus
CG1969-RF 1341 CG1969-RF 137..779 31..673 3215 100 Plus
CG1969-RH 1261 CG1969-RH 57..699 31..673 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741390 433..673 1205 100 Plus
3R 32079331 3R 29740567..29740778 31..242 1060 100 Plus
3R 32079331 3R 29740840..29740967 243..370 640 100 Plus
3R 32079331 3R 29741028..29741091 370..433 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:44:38 has no hits.

BO09177.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:05 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:21 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-PA 1..660 17..676 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:32 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:45:28 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..719 17..681 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:45:28 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29740840..29740967 243..370 100 -> Plus
3R 29741029..29741090 371..432 100 -> Plus
3R 29741150..29741398 433..681 98   Plus
3R 29740568..29740778 32..242 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:32 Download gff for BO09177.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 32..242 100 -> Plus
arm_3R 25566562..25566689 243..370 100 -> Plus
arm_3R 25566751..25566812 371..432 100 -> Plus
arm_3R 25566872..25567120 433..681 98   Plus

BO09177.complete Sequence

691 bp (691 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631422

> BO09177.complete
GAAGTTATCAGTCGACATGGTGCAACTTACGGAGGAGACATATCTGTACG
ATCCTAATCTGCTGCTAAAGCTGGACTTTCATCGCAGTCCCGCCAACTTT
AAGCCCTTCATATCGGCGGCCAATCCCGGCGAGCCCTGGATGAAAGTGCG
TCCTCTCAAGGACACCGACTACGATCGTGGATTCCTGCAGCTGCTCTCGC
AACTCACCCATGTCGGCAATGTGAATCGTACGCAGTTCTTGACCCGCTTT
TCGCAGATGAAAGCCAGTGGGGACTACTTTGTCACCGTCATTGAGGACAC
TCGCAAGAATGAGATTATTGGAGCTGCATCCTTGGTGATCGAGCGCAAGT
TCATCCATAACTGTGCTGTGCGTGGCCGTCTAGAGGATGTGGTGGTCAAT
GACACGTATCGCGGGAAGCAACTGGGAAAACTGATCGTGGTCACCGTATC
GCTGCTGGCCGAGGAACTGGGCTGCTACAAAATGTCGCTGGACTGCAAGG
ACAAGCTGATCAAGTTCTATGAGTCGCTGGGCTATGTGGCCATTCCCGGA
AACTCCAACTCCATGACGATTCGCTACGATGAGGGGCCAACGCTCAAGCG
GAATGCTACCTCAGCCGGCTCCAGTGGAACAGTGGGCGACTCCTGCCAAA
CTGTGAGCCTCGATTTTGCCTCTGCAAGCTTTCTAGACCAT

BO09177.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:59:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 660 CG1969-PA 1..657 17..673 3285 100 Plus
CG1969-RF 687 CG1969-PF 3..645 31..673 3215 100 Plus
CG1969-RH 648 CG1969-PH 3..645 31..673 3215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:59:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-RA 1273 CG1969-RA 55..711 17..673 3285 100 Plus
CG1969-RF 1341 CG1969-RF 137..779 31..673 3215 100 Plus
CG1969-RH 1261 CG1969-RH 57..699 31..673 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:59:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29741150..29741390 433..673 1205 100 Plus
3R 32079331 3R 29740567..29740778 31..242 1060 100 Plus
3R 32079331 3R 29740840..29740967 243..370 640 100 Plus
3R 32079331 3R 29741028..29741091 370..433 320 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:59:08 has no hits.

BO09177.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:24 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 1..660 17..676 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:29 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 36..700 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:37:25 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..711 17..675 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:24 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 36..700 17..681 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:31:19 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
CG1969-RA 55..711 17..675 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:31:19 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29740568..29740778 32..242 100 -> Plus
3R 29740840..29740967 243..370 100 -> Plus
3R 29741029..29741090 371..432 100 -> Plus
3R 29741150..29741390 433..675 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:37:25 Download gff for BO09177.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25566290..25566500 32..242 100 -> Plus
arm_3R 25566562..25566689 243..370 100 -> Plus
arm_3R 25566751..25566812 371..432 100 -> Plus
arm_3R 25566872..25567112 433..675 99   Plus

BO09177.pep Sequence

Translation from 16 to 691

> BO09177.pep
MVQLTEETYLYDPNLLLKLDFHRSPANFKPFISAANPGEPWMKVRPLKDT
DYDRGFLQLLSQLTHVGNVNRTQFLTRFSQMKASGDYFVTVIEDTRKNEI
IGAASLVIERKFIHNCAVRGRLEDVVVNDTYRGKQLGKLIVVTVSLLAEE
LGCYKMSLDCKDKLIKFYESLGYVAIPGNSNSMTIRYDEGPTLKRNATSA
GSSGTVGDSCQTVSLDFASASFLDH

BO09177.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1969-PA 219 CG1969-PA 1..219 1..219 1130 100 Plus
CG1969-PH 215 CG1969-PH 2..215 6..219 1107 100 Plus
CG1969-PG 215 CG1969-PG 2..215 6..219 1107 100 Plus
CG1969-PB 215 CG1969-PB 2..215 6..219 1107 100 Plus
CG1969-PF 228 CG1969-PF 2..215 6..219 1107 100 Plus