Clone BO09181 Report

Search the DGRC for BO09181

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG3165-RA
Protein status:BO09181.pep: Imported from assembly
Sequenced Size:1087

Clone Sequence Records

BO09181.3prime Sequence

919 bp (826 high quality bases) assembled on 2006-01-11

> BO09181.3prime
ATGGTCTAGAAAGCTTACGATTGCGCTCTTTTTTCGACAAACAGGAGAGC
CAAGTGGCACCACTTGCTGGAATGGAATGGCCTGCTCCTCGGCGAAGGCC
AGGAAATCAATGCCGTAATGCTGTATCAGTTTTGTGGTCATGACTACATC
AGCCTCTGCCTGGTGAGCACTAAGTGCTGGTATCTTAAATATTCTCGTGT
AGAGACTTTCCAAATTATAAACTCCGCGGGGGGGATAGCGTTTGTTCTCG
GCACACTTGCATCCACTGAACAGCTGGCGTCGTGACCTAAACTCATCGGG
TTTCCGCTTGGGAGGGGTCTGCTCCTCCAAGTCATCCTCATCGCCGTCGC
GTAATAACTTACGCTTGGCGAATGCCTCTGTAGGCTTTAAAATTGGACGA
TTTGGAGTGGTTTCGTTTCTGGTTCGCCAATCGATGTTCACGACCGCTTC
TGGCTCCTTGAGGCAAGTTTCAGTATTCTGTTTGGGTTTCAGCTCCGGAA
TGATTTCCTGCACATCGTTGGGTACTTTCAACTGACTGGTTTCTTTTTGT
TGTGTGTCGTCAATCTCCATGAAGGCGCGCAGTGAGTCAACACAAGTCAG
GGATTGGGGAAGCTCTATGTTTAGTTTCTCAAATGCCTGCCTCAGAATGG
GAAAATCGAAGCCCCAACCATTGTGAGCCACCAGGCAAACCGGACTCGGC
AAGTGCTTTAGAAAACTGACGATGAGTTGCGCGGCATCCGTGTCTAGCTG
GGACTCCCGCTCCAGCAAGTAGTTGCTCAGACCTGTTATTCTCTCCGCTT
CCGGGTCCACTACCATGGACGGCTGGAAGAGCACATTCAATTTGTGCAGC
ACCCGCGGTGCCGCTGGCAGCTCCTGCTGCTCATCCTGNTCCTGCTCCTT
CTTTTTCTTTCTAAGAGCG

BO09181.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-PA 1056 CG3165-RA 163..1053 909..19 4436 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-RB 1221 CG3165-RB 283..1173 909..19 4444 99.9 Minus
CG3165-RA 1323 CG3165-RA 283..1173 909..19 4444 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2977585..2978350 784..19 3830 100 Minus
2L 23513712 2L 2977404..2977532 909..781 634 99.2 Minus
Blast to na_te.dros performed on 2015-02-12 19:18:29 has no hits.

BO09181.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:12 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-PA 152..1056 15..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:31 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-PA 152..1056 15..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:24 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 272..1185 7..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:38 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 272..1185 7..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:38 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2977393..2977530 783..919 97 -> Minus
2L 2977587..2978362 7..782 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:24 Download gff for BO09181.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2977393..2977530 783..919 97 -> Minus
arm_2L 2977587..2978362 7..782 99   Minus

BO09181.5prime Sequence

961 bp (782 high quality bases) assembled on 2006-01-10

> BO09181.5prime
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATT
TAAGATACCAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGA
CCACAAAACTG

BO09181.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-PA 1056 CG3165-RA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:14:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-RB 1221 CG3165-RB 121..1065 17..961 4725 100 Plus
CG3165-RA 1323 CG3165-RA 121..1065 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2977585..2978242 304..961 3290 100 Plus
2L 23513712 2L 2977242..2977532 17..307 1455 100 Plus
Blast to na_te.dros performed 2015-02-04 01:14:54
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 420..468 14..61 125 75.5 Plus

BO09181.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:13 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-PA 1..945 17..961 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:33 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-PA 1..945 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:03 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 121..1065 17..961 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:07 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 121..1065 17..961 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:07 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2977242..2977530 17..305 100 -> Plus
2L 2977587..2978242 306..961 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:03 Download gff for BO09181.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2977242..2977530 17..305 100 -> Plus
arm_2L 2977587..2978242 306..961 100   Plus

BO09181.complete Sequence

1087 bp assembled on 2008-08-15

> BO09181.complete
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATT
TAAGATACCAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGA
CCACAAAACTGATACAGCATTACGGCATTGATTTCCTGGCCTTCGCCGAG
GAGCAGGCCATTCCATTCCAGCAAGTGGTGCCACTTGGCTCTCCTGTTTG
TCGAAAAAAGAGCGCAATCGTAAGCTTTCTAGACCAT

BO09181.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-RB 1056 CG3165-PB 1..1053 17..1069 5265 100 Plus
CG3165-RA 1056 CG3165-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-RB 1221 CG3165-RB 121..1173 17..1069 5265 100 Plus
CG3165-RA 1323 CG3165-RA 121..1173 17..1069 5265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2977585..2978350 304..1069 3830 100 Plus
2L 23513712 2L 2977242..2977532 17..307 1455 100 Plus
Blast to na_te.dros performed 2014-11-27 08:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
G2 3102 G2 G2 3102bp 420..468 14..61 125 75.5 Plus

BO09181.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:52 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 116..1180 17..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:59 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 121..1174 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:46 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 116..1169 17..1071 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:13 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
CG3165-RA 121..1174 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:13 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2977242..2977530 17..305 100 -> Plus
2L 2977587..2978351 306..1071 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:59 Download gff for BO09181.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2977242..2977530 17..305 100 -> Plus
arm_2L 2977587..2978351 306..1071 99   Plus

BO09181.pep Sequence

Translation from 16 to 1087

> BO09181.pep
MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEA
ALLKKKKKEQDQDEQQELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSN
YLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKL
NIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNT
ETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEE
QTPPKRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPAL
SAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVVPLGSPVCRKKSA
IVSFLDH

BO09181.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3165-PB 351 CG3165-PB 1..351 1..351 1818 100 Plus
CG3165-PA 351 CG3165-PA 1..351 1..351 1818 100 Plus