Clone Sequence Records
BO09181.3prime Sequence
919 bp (826 high quality bases) assembled on 2006-01-11
> BO09181.3prime
ATGGTCTAGAAAGCTTACGATTGCGCTCTTTTTTCGACAAACAGGAGAGC
CAAGTGGCACCACTTGCTGGAATGGAATGGCCTGCTCCTCGGCGAAGGCC
AGGAAATCAATGCCGTAATGCTGTATCAGTTTTGTGGTCATGACTACATC
AGCCTCTGCCTGGTGAGCACTAAGTGCTGGTATCTTAAATATTCTCGTGT
AGAGACTTTCCAAATTATAAACTCCGCGGGGGGGATAGCGTTTGTTCTCG
GCACACTTGCATCCACTGAACAGCTGGCGTCGTGACCTAAACTCATCGGG
TTTCCGCTTGGGAGGGGTCTGCTCCTCCAAGTCATCCTCATCGCCGTCGC
GTAATAACTTACGCTTGGCGAATGCCTCTGTAGGCTTTAAAATTGGACGA
TTTGGAGTGGTTTCGTTTCTGGTTCGCCAATCGATGTTCACGACCGCTTC
TGGCTCCTTGAGGCAAGTTTCAGTATTCTGTTTGGGTTTCAGCTCCGGAA
TGATTTCCTGCACATCGTTGGGTACTTTCAACTGACTGGTTTCTTTTTGT
TGTGTGTCGTCAATCTCCATGAAGGCGCGCAGTGAGTCAACACAAGTCAG
GGATTGGGGAAGCTCTATGTTTAGTTTCTCAAATGCCTGCCTCAGAATGG
GAAAATCGAAGCCCCAACCATTGTGAGCCACCAGGCAAACCGGACTCGGC
AAGTGCTTTAGAAAACTGACGATGAGTTGCGCGGCATCCGTGTCTAGCTG
GGACTCCCGCTCCAGCAAGTAGTTGCTCAGACCTGTTATTCTCTCCGCTT
CCGGGTCCACTACCATGGACGGCTGGAAGAGCACATTCAATTTGTGCAGC
ACCCGCGGTGCCGCTGGCAGCTCCTGCTGCTCATCCTGNTCCTGCTCCTT
CTTTTTCTTTCTAAGAGCG
BO09181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-PA | 1056 | CG3165-RA | 163..1053 | 909..19 | 4436 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:18:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-RB | 1221 | CG3165-RB | 283..1173 | 909..19 | 4444 | 99.9 | Minus |
CG3165-RA | 1323 | CG3165-RA | 283..1173 | 909..19 | 4444 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2977585..2978350 | 784..19 | 3830 | 100 | Minus |
2L | 23513712 | 2L | 2977404..2977532 | 909..781 | 634 | 99.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:18:29 has no hits.
BO09181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:12 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-PA | 152..1056 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:31 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-PA | 152..1056 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:09:24 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 272..1185 | 7..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:38:38 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 272..1185 | 7..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:38:38 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2977393..2977530 | 783..919 | 97 | -> | Minus |
2L | 2977587..2978362 | 7..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:09:24 Download gff for
BO09181.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2977393..2977530 | 783..919 | 97 | -> | Minus |
arm_2L | 2977587..2978362 | 7..782 | 99 | | Minus |
BO09181.5prime Sequence
961 bp (782 high quality bases) assembled on 2006-01-10
> BO09181.5prime
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATT
TAAGATACCAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGA
CCACAAAACTG
BO09181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-PA | 1056 | CG3165-RA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:14:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-RB | 1221 | CG3165-RB | 121..1065 | 17..961 | 4725 | 100 | Plus |
CG3165-RA | 1323 | CG3165-RA | 121..1065 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:14:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2977585..2978242 | 304..961 | 3290 | 100 | Plus |
2L | 23513712 | 2L | 2977242..2977532 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 01:14:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 420..468 | 14..61 | 125 | 75.5 | Plus |
BO09181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:13 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-PA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:33 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-PA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:39:03 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 121..1065 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:28:07 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 121..1065 | 17..961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:28:07 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
2L | 2977587..2978242 | 306..961 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:39:03 Download gff for
BO09181.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
arm_2L | 2977587..2978242 | 306..961 | 100 | | Plus |
BO09181.complete Sequence
1087 bp assembled on 2008-08-15
> BO09181.complete
GAAGTTATCAGTCGACATGGCTCCGAACGATGCAGTTGCGGAGCACGCGG
AGGAGCAGCCAAAGATTTCCACATTTGCCGTTCTGGACCTAGAGACCACC
AACTTGCCTGCCTACAGGAACAACCGAGTGAGCATTACGGAGTTGTGCAT
TTACGCCTTTGAAGCCGCGCTCCTTAAGAAGAAAAAGAAGGAGCAGGACC
AGGATGAGCAGCAGGAGCTGCCAGCGGCACCGCGGGTGCTGCACAAATTG
AATGTGCTCTTCCAGCCGTCCATGGTAGTGGACCCGGAAGCGGAGAGAAT
AACAGGTCTGAGCAACTACTTGCTGGAGCGGGAGTCCCAGCTAGACACGG
ATGCCGCGCAACTCATCGTCAGTTTTCTAAAGCACTTGCCGAGTCCGGTT
TGCCTGGTGGCTCACAATGGTTGGGGCTTCGATTTTCCCATTCTGAGGCA
GGCATTTGAGAAACTAAACATAGAGCTTCCCCAATCCCTGACTTGTGTTG
ACTCACTGCGCGCCTTCATGGAGATTGACGACACACAACAAAAAGAAACC
AGTCAGTTGAAAGTACCCAACGATGTGCAGGAAATCATTCCGGAGCTGAA
ACCCAAACAGAATACTGAAACTTGCCTCAAGGAGCCAGAAGCGGTCGTGA
ACATCGATTGGCGAACCAGAAACGAAACCACTCCAAATCGTCCAATTTTA
AAGCCTACAGAGGCATTCGCCAAGCGTAAGTTATTACGCGACGGCGATGA
GGATGACTTGGAGGAGCAGACCCCTCCCAAGCGGAAACCCGATGAGTTTA
GGTCACGACGCCAGCTGTTCAGTGGATGCAAGTGTGCCGAGAACAAACGC
TATCCCCCCCGCGGAGTTTATAATTTGGAAAGTCTCTACACGAGAATATT
TAAGATACCAGCACTTAGTGCTCACCAGGCAGAGGCTGATGTAGTCATGA
CCACAAAACTGATACAGCATTACGGCATTGATTTCCTGGCCTTCGCCGAG
GAGCAGGCCATTCCATTCCAGCAAGTGGTGCCACTTGGCTCTCCTGTTTG
TCGAAAAAAGAGCGCAATCGTAAGCTTTCTAGACCAT
BO09181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:39:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-RB | 1056 | CG3165-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG3165-RA | 1056 | CG3165-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-RB | 1221 | CG3165-RB | 121..1173 | 17..1069 | 5265 | 100 | Plus |
CG3165-RA | 1323 | CG3165-RA | 121..1173 | 17..1069 | 5265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2977585..2978350 | 304..1069 | 3830 | 100 | Plus |
2L | 23513712 | 2L | 2977242..2977532 | 17..307 | 1455 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:39:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G2 | 3102 | G2 G2 3102bp | 420..468 | 14..61 | 125 | 75.5 | Plus |
BO09181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:45:52 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 116..1180 | 17..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:59 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 121..1174 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:10:46 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 116..1169 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:13 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3165-RA | 121..1174 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:13 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
2L | 2977587..2978351 | 306..1071 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:59 Download gff for
BO09181.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2977242..2977530 | 17..305 | 100 | -> | Plus |
arm_2L | 2977587..2978351 | 306..1071 | 99 | | Plus |
BO09181.pep Sequence
Translation from 16 to 1087
> BO09181.pep
MAPNDAVAEHAEEQPKISTFAVLDLETTNLPAYRNNRVSITELCIYAFEA
ALLKKKKKEQDQDEQQELPAAPRVLHKLNVLFQPSMVVDPEAERITGLSN
YLLERESQLDTDAAQLIVSFLKHLPSPVCLVAHNGWGFDFPILRQAFEKL
NIELPQSLTCVDSLRAFMEIDDTQQKETSQLKVPNDVQEIIPELKPKQNT
ETCLKEPEAVVNIDWRTRNETTPNRPILKPTEAFAKRKLLRDGDEDDLEE
QTPPKRKPDEFRSRRQLFSGCKCAENKRYPPRGVYNLESLYTRIFKIPAL
SAHQAEADVVMTTKLIQHYGIDFLAFAEEQAIPFQQVVPLGSPVCRKKSA
IVSFLDH
BO09181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3165-PB | 351 | CG3165-PB | 1..351 | 1..351 | 1818 | 100 | Plus |
CG3165-PA | 351 | CG3165-PA | 1..351 | 1..351 | 1818 | 100 | Plus |