Clone Sequence Records
BO09184.3prime Sequence
875 bp (764 high quality bases) assembled on 2006-01-11
> BO09184.3prime
ATGGTCTAGAAAGCTTGTCTTCTGCAGATGGGTCTTCACCAGGGAAACAA
GAGGGGCAGCTGTGGGCATCGCTGGGTGCTCACCGGCACTGCCGGCGATA
TCAATATGGGTGTACTTAATGGGCAGCATTGAATCCAACCCGTGTTTGTC
CAGTCCAGAAGCCTTAATCATAAAGGCGGCGGGCACCTGGTGACCGCGAG
GAGTCCTCACCGACGGGGCATTATTGGCCTGCACCAAATCCTCGCCAATC
ACCTTTCCAGCGTTAAAAGAGAAGTCACTGGGACGGAGAATGGACACTTC
GAAGGGCTCTCCGAAGGCCTGTCCAGCAGCCTGCAGTCTTCTGGCGTGAT
CCTCCCGATGGGCCACGCTGTTATCGATGGCAATCGACTGACCCTCACCT
GCCGAGATGAAGGCGTGACCAGTCAAGGTGGCAATGGTGAAAAGATGCGG
ATCCGGGAGATTCTGCTCCACGACCAACTCCTTCATGCGGCACAGGGCAT
CGGTCATGCACATGCGACCCTCGGCATCAGTATTTCCAATCCTCACATGA
AGACCAGCTCGCGAGGTGATAACCTCATCGGCCACGTAGCACTCCTCGCC
CACGGAATTGCGCACCATGCACAGGGCAGCCACAACATGGATATCATCCG
GTTGCAGTTGACTGACCACCTGCATGAATCCAGCGACAGCAGCCGCTCCA
CACTTGTCGCGCGACATACCGGCCATCACACCACCGGCCTTGATGTCAGC
ACCACCGGTGTCATAGGTAACACCCTTGCCGACCAGCATCAGAGTTTTTC
TCGCCGGCTTTGGAGGCTTGTACTCCAGGAAAATGATGCGACCACGATGA
CGCTCCACTGCATCAGCAGCCCGGT
BO09184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9285-PA | 1527 | Dip-B-RA | 668..1524 | 875..19 | 4285 | 100 | Minus |
CG9285-PC | 1527 | Dip-B-RC | 668..1524 | 875..19 | 4285 | 100 | Minus |
CG9285-PB | 1527 | Dip-B-RB | 668..1524 | 875..19 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 731..1587 | 875..19 | 4285 | 100 | Minus |
Dip-B-RB | 1938 | CG9285-RB | 856..1712 | 875..19 | 4285 | 100 | Minus |
Dip-B-RC | 2047 | CG9285-RC | 965..1821 | 875..19 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784594..13785450 | 875..19 | 4285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:23:20 has no hits.
BO09184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:16 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-PA | 668..1527 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:37 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9285-PB | 668..1527 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:51:12 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 950..1809 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:55 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 965..1824 | 15..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:55 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13784594..13785453 | 15..875 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:51:12 Download gff for
BO09184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9610316..9611175 | 15..875 | 99 | | Minus |
BO09184.5prime Sequence
885 bp (797 high quality bases) assembled on 2006-01-11
> BO09184.5prime
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGAATCAT
BO09184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9285-PA | 1527 | Dip-B-RA | 1..864 | 17..880 | 4320 | 100 | Plus |
CG9285-PC | 1527 | Dip-B-RC | 1..864 | 17..880 | 4320 | 100 | Plus |
CG9285-PB | 1527 | Dip-B-RB | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:40:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 63..932 | 16..885 | 4335 | 99.9 | Plus |
Dip-B-RB | 1938 | CG9285-RB | 188..1057 | 16..885 | 4335 | 99.9 | Plus |
Dip-B-RC | 2047 | CG9285-RC | 297..1166 | 16..885 | 4335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:39:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784316..13784795 | 406..885 | 2385 | 99.8 | Plus |
3R | 32079331 | 3R | 13783817..13784094 | 31..308 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 13784159..13784259 | 306..406 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 09:40:01 has no hits.
BO09184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:17 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:38 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9285-PB | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:35 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 278..1151 | 12..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:49 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 293..1166 | 12..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:49 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13783817..13784093 | 31..307 | 100 | -> | Plus |
3R | 13784161..13784259 | 308..406 | 100 | -> | Plus |
3R | 13784317..13784795 | 407..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:35 Download gff for
BO09184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9609539..9609815 | 31..307 | 100 | -> | Plus |
arm_3R | 9609883..9609981 | 308..406 | 100 | -> | Plus |
arm_3R | 9610039..9610517 | 407..885 | 99 | | Plus |
BO09184.complete Sequence
1558 bp assembled on 2008-08-15
> BO09184.complete
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCA
ATTCCGTGGGCGAGGAGTGCTACGTGGCCGATGAGGTTATCACCTCGCGA
GCTGGTCTTCATGTGAGGATTGGAAATACTGATGCCGAGGGTCGCATGTG
CATGACCGATGCCCTGTGCCGCATGAAGGAGTTGGTCGTGGAGCAGAATC
TCCCGGATCCGCATCTTTTCACCATTGCCACCTTGACTGGTCACGCCTTC
ATCTCGGCAGGTGAGGGTCAGTCGATTGCCATCGATAACAGCGTGGCCCA
TCGGGAGGATCACGCCAGAAGACTGCAGGCTGCTGGACAGGCCTTCGGAG
AGCCCTTCGAAGTGTCCATTCTCCGTCCCAGTGACTTCTCTTTTAACGCT
GGAAAGGTGATTGGCGAGGATTTGGTGCAGGCCAATAATGCCCCGTCGGT
GAGGACTCCTCGCGGTCACCAGGTGCCCGCCGCCTTTATGATTAAGGCTT
CTGGACTGGACAAACACGGGTTGGATTCAATGCTGCCCATTAAGTACACC
CATATTGATATCGCCGGCAGTGCCGGTGAGCACCCAGCGATGCCCACAGC
TGCCCCTCTTGTTTCCCTGGTGAAGACCCATCTGCAGAAGACAAGCTTTC
TAGACCAT
BO09184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1527 | CG9285-PD | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Dip-B-RB | 1527 | CG9285-PB | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Dip-B-RC | 1527 | CG9285-PC | 1..1524 | 17..1540 | 7620 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-RD | 1813 | CG9285-RD | 63..1587 | 16..1540 | 7625 | 100 | Plus |
Dip-B-RB | 1938 | CG9285-RB | 188..1712 | 16..1540 | 7625 | 100 | Plus |
Dip-B-RC | 2047 | CG9285-RC | 297..1821 | 16..1540 | 7625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13784316..13785450 | 406..1540 | 5675 | 100 | Plus |
3R | 32079331 | 3R | 13783817..13784094 | 31..308 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 13784159..13784259 | 306..406 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:39:53 has no hits.
BO09184.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:32 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RB | 184..1715 | 12..1544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:07 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RA | 283..1806 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:46 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RB | 189..1712 | 17..1542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:08 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dip-B-RC | 298..1821 | 17..1542 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:08 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13783817..13784093 | 31..307 | 100 | -> | Plus |
3R | 13784161..13784259 | 308..406 | 100 | -> | Plus |
3R | 13784317..13785450 | 407..1542 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:07 Download gff for
BO09184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9609883..9609981 | 308..406 | 100 | -> | Plus |
arm_3R | 9609539..9609815 | 31..307 | 100 | -> | Plus |
arm_3R | 9610039..9611172 | 407..1542 | 99 | | Plus |
BO09184.pep Sequence
Translation from 16 to 1558
> BO09184.pep
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQKTSFLDH
BO09184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dip-B-PD | 508 | CG9285-PD | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PB | 508 | CG9285-PB | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PC | 508 | CG9285-PC | 1..508 | 1..508 | 2606 | 100 | Plus |
Dip-B-PA | 508 | CG9285-PA | 1..508 | 1..508 | 2606 | 100 | Plus |
grsm-PB | 558 | CG7340-PB | 292..434 | 244..392 | 241 | 40 | Plus |