Clone BO09184 Report

Search the DGRC for BO09184

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptDip-B-RA
Protein status:BO09184.pep: Imported from assembly
Sequenced Size:1558

Clone Sequence Records

BO09184.3prime Sequence

875 bp (764 high quality bases) assembled on 2006-01-11

> BO09184.3prime
ATGGTCTAGAAAGCTTGTCTTCTGCAGATGGGTCTTCACCAGGGAAACAA
GAGGGGCAGCTGTGGGCATCGCTGGGTGCTCACCGGCACTGCCGGCGATA
TCAATATGGGTGTACTTAATGGGCAGCATTGAATCCAACCCGTGTTTGTC
CAGTCCAGAAGCCTTAATCATAAAGGCGGCGGGCACCTGGTGACCGCGAG
GAGTCCTCACCGACGGGGCATTATTGGCCTGCACCAAATCCTCGCCAATC
ACCTTTCCAGCGTTAAAAGAGAAGTCACTGGGACGGAGAATGGACACTTC
GAAGGGCTCTCCGAAGGCCTGTCCAGCAGCCTGCAGTCTTCTGGCGTGAT
CCTCCCGATGGGCCACGCTGTTATCGATGGCAATCGACTGACCCTCACCT
GCCGAGATGAAGGCGTGACCAGTCAAGGTGGCAATGGTGAAAAGATGCGG
ATCCGGGAGATTCTGCTCCACGACCAACTCCTTCATGCGGCACAGGGCAT
CGGTCATGCACATGCGACCCTCGGCATCAGTATTTCCAATCCTCACATGA
AGACCAGCTCGCGAGGTGATAACCTCATCGGCCACGTAGCACTCCTCGCC
CACGGAATTGCGCACCATGCACAGGGCAGCCACAACATGGATATCATCCG
GTTGCAGTTGACTGACCACCTGCATGAATCCAGCGACAGCAGCCGCTCCA
CACTTGTCGCGCGACATACCGGCCATCACACCACCGGCCTTGATGTCAGC
ACCACCGGTGTCATAGGTAACACCCTTGCCGACCAGCATCAGAGTTTTTC
TCGCCGGCTTTGGAGGCTTGTACTCCAGGAAAATGATGCGACCACGATGA
CGCTCCACTGCATCAGCAGCCCGGT

BO09184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG9285-PA 1527 Dip-B-RA 668..1524 875..19 4285 100 Minus
CG9285-PC 1527 Dip-B-RC 668..1524 875..19 4285 100 Minus
CG9285-PB 1527 Dip-B-RB 668..1524 875..19 4285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 731..1587 875..19 4285 100 Minus
Dip-B-RB 1938 CG9285-RB 856..1712 875..19 4285 100 Minus
Dip-B-RC 2047 CG9285-RC 965..1821 875..19 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784594..13785450 875..19 4285 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:23:20 has no hits.

BO09184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:16 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-PA 668..1527 15..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:37 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9285-PB 668..1527 15..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:51:12 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 950..1809 15..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:55 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 965..1824 15..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:55 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13784594..13785453 15..875 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:51:12 Download gff for BO09184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9610316..9611175 15..875 99   Minus

BO09184.5prime Sequence

885 bp (797 high quality bases) assembled on 2006-01-11

> BO09184.5prime
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGAATCAT

BO09184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG9285-PA 1527 Dip-B-RA 1..864 17..880 4320 100 Plus
CG9285-PC 1527 Dip-B-RC 1..864 17..880 4320 100 Plus
CG9285-PB 1527 Dip-B-RB 1..864 17..880 4320 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:40:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 63..932 16..885 4335 99.9 Plus
Dip-B-RB 1938 CG9285-RB 188..1057 16..885 4335 99.9 Plus
Dip-B-RC 2047 CG9285-RC 297..1166 16..885 4335 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:39:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784316..13784795 406..885 2385 99.8 Plus
3R 32079331 3R 13783817..13784094 31..308 1390 100 Plus
3R 32079331 3R 13784159..13784259 306..406 505 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:40:01 has no hits.

BO09184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:17 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:38 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9285-PB 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:24:35 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 278..1151 12..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:32:49 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 293..1166 12..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:32:49 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13783817..13784093 31..307 100 -> Plus
3R 13784161..13784259 308..406 100 -> Plus
3R 13784317..13784795 407..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:24:35 Download gff for BO09184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9609539..9609815 31..307 100 -> Plus
arm_3R 9609883..9609981 308..406 100 -> Plus
arm_3R 9610039..9610517 407..885 99   Plus

BO09184.complete Sequence

1558 bp assembled on 2008-08-15

> BO09184.complete
GAAGTTATCAGTCGACATGGGTATCGAAAAAATTCTACCATGCACCCTCC
GGCTGAACAAGCTGATGAGTCTGGCCGGCAACGACTGCCTGTGCATCATC
GATCGCAATGCGGTTCCCAATGAACTGAAGGCCACCTTCGAGGAGCACCG
CAAATTCGACAAGTCCTTCGACAGCAGCATATCCTGCTTTAAGGTGCCCA
ACGTGGATCAACCTGTGGTCTATGCCCCCGTCTCCGAGCTCACCGACTAC
GACGATGTGAGGAGCTACCAGGAGGCGGCCAAGCGGTCCATGGAGAAGGT
TCTCAAGGCTGGATTCCACACGCCGTTGCTGTTTGTGCCCAAGGTTAAGC
GCTTCCCCGAGGTCGAACTCTGCACCGTTCTGGGAGCTCTGGAGCAGCTT
TATGTGCCCATTCAATTGCGCGAGGCAGGAACTTTGAAGGACCCCCGTGT
GACCACGCTCAGTGTCCAGATCGATGATCCAAGGGCCGAAGCTATTTTCC
AGGAAGCTCTCATTCTGGAGGCCGGTCGCTTTGTGGCCCGCGACATCGGA
GTTGGGGACCCGGAGCGCATGACGCCCATCCAGGTGGAGAAGTACATCAA
GCCGTTGTTCGACAAGCTCAACGTGAATGTGATCAGTGACACCCAGGTGT
TGCAGAAGGAGTATCCCCTGTTTGCCGCCGTAAACCGGGCTGCTGATGCA
GTGGAGCGTCATCGTGGTCGCATCATTTTCCTGGAGTACAAGCCTCCAAA
GCCGGCGAGAAAAACTCTGATGCTGGTCGGCAAGGGTGTTACCTATGACA
CCGGTGGTGCTGACATCAAGGCCGGTGGTGTGATGGCCGGTATGTCGCGC
GACAAGTGTGGAGCGGCTGCTGTCGCTGGATTCATGCAGGTGGTCAGTCA
ACTGCAACCGGATGATATCCATGTTGTGGCTGCCCTGTGCATGGTGCGCA
ATTCCGTGGGCGAGGAGTGCTACGTGGCCGATGAGGTTATCACCTCGCGA
GCTGGTCTTCATGTGAGGATTGGAAATACTGATGCCGAGGGTCGCATGTG
CATGACCGATGCCCTGTGCCGCATGAAGGAGTTGGTCGTGGAGCAGAATC
TCCCGGATCCGCATCTTTTCACCATTGCCACCTTGACTGGTCACGCCTTC
ATCTCGGCAGGTGAGGGTCAGTCGATTGCCATCGATAACAGCGTGGCCCA
TCGGGAGGATCACGCCAGAAGACTGCAGGCTGCTGGACAGGCCTTCGGAG
AGCCCTTCGAAGTGTCCATTCTCCGTCCCAGTGACTTCTCTTTTAACGCT
GGAAAGGTGATTGGCGAGGATTTGGTGCAGGCCAATAATGCCCCGTCGGT
GAGGACTCCTCGCGGTCACCAGGTGCCCGCCGCCTTTATGATTAAGGCTT
CTGGACTGGACAAACACGGGTTGGATTCAATGCTGCCCATTAAGTACACC
CATATTGATATCGCCGGCAGTGCCGGTGAGCACCCAGCGATGCCCACAGC
TGCCCCTCTTGTTTCCCTGGTGAAGACCCATCTGCAGAAGACAAGCTTTC
TAGACCAT

BO09184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1527 CG9285-PD 1..1524 17..1540 7620 100 Plus
Dip-B-RB 1527 CG9285-PB 1..1524 17..1540 7620 100 Plus
Dip-B-RC 1527 CG9285-PC 1..1524 17..1540 7620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-RD 1813 CG9285-RD 63..1587 16..1540 7625 100 Plus
Dip-B-RB 1938 CG9285-RB 188..1712 16..1540 7625 100 Plus
Dip-B-RC 2047 CG9285-RC 297..1821 16..1540 7625 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13784316..13785450 406..1540 5675 100 Plus
3R 32079331 3R 13783817..13784094 31..308 1390 100 Plus
3R 32079331 3R 13784159..13784259 306..406 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:39:53 has no hits.

BO09184.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:32 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 184..1715 12..1544 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:07 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RA 283..1806 17..1542 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:46 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RB 189..1712 17..1542 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:08 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
Dip-B-RC 298..1821 17..1542 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:08 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13783817..13784093 31..307 100 -> Plus
3R 13784161..13784259 308..406 100 -> Plus
3R 13784317..13785450 407..1542 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:07 Download gff for BO09184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9609883..9609981 308..406 100 -> Plus
arm_3R 9609539..9609815 31..307 100 -> Plus
arm_3R 9610039..9611172 407..1542 99   Plus

BO09184.pep Sequence

Translation from 16 to 1558

> BO09184.pep
MGIEKILPCTLRLNKLMSLAGNDCLCIIDRNAVPNELKATFEEHRKFDKS
FDSSISCFKVPNVDQPVVYAPVSELTDYDDVRSYQEAAKRSMEKVLKAGF
HTPLLFVPKVKRFPEVELCTVLGALEQLYVPIQLREAGTLKDPRVTTLSV
QIDDPRAEAIFQEALILEAGRFVARDIGVGDPERMTPIQVEKYIKPLFDK
LNVNVISDTQVLQKEYPLFAAVNRAADAVERHRGRIIFLEYKPPKPARKT
LMLVGKGVTYDTGGADIKAGGVMAGMSRDKCGAAAVAGFMQVVSQLQPDD
IHVVAALCMVRNSVGEECYVADEVITSRAGLHVRIGNTDAEGRMCMTDAL
CRMKELVVEQNLPDPHLFTIATLTGHAFISAGEGQSIAIDNSVAHREDHA
RRLQAAGQAFGEPFEVSILRPSDFSFNAGKVIGEDLVQANNAPSVRTPRG
HQVPAAFMIKASGLDKHGLDSMLPIKYTHIDIAGSAGEHPAMPTAAPLVS
LVKTHLQKTSFLDH

BO09184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:20:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dip-B-PD 508 CG9285-PD 1..508 1..508 2606 100 Plus
Dip-B-PB 508 CG9285-PB 1..508 1..508 2606 100 Plus
Dip-B-PC 508 CG9285-PC 1..508 1..508 2606 100 Plus
Dip-B-PA 508 CG9285-PA 1..508 1..508 2606 100 Plus
grsm-PB 558 CG7340-PB 292..434 244..392 241 40 Plus