Clone Sequence Records
BO09185.3prime Sequence
954 bp (750 high quality bases) assembled on 2006-01-11
> BO09185.3prime
ATGGTCTAGAAAGCTTGCGTTGGGCGACGTATTACGCTTTGGCGTCGATG
GCGGCAGGTCCATTGTCTTGCACACCCAGCCGGATATATCCACCTCCTCC
AATTCCGCCTTGCGTATCCACGGATGACTCAGCAGGGTCTTGAGATCTGC
CCGCTCGTCGGGCTGTTTCTTCAGGCAGATGTCCACGAAGTCCTTGAACT
CGGTGGAGAAGATCTTGTGCTCTAGCTTGGGCGGCGGTTCGTTTACAATA
TAATCCAGCAGCTCGAAGATGGCCATTGCCCTGGGCTCGTCCGTCGGCTG
GCCGCTCTCCTCCGCATTGTCGGCGAATATCGACTCCAGGGTGGCGGTGT
TTGGCGGCGGGATGGGGTACATGCCGATGGCCATCTCCACCAGCGACAGA
CCCAACGACCAGATGTCCGACTGCACGGAGTAGTGGGTGCCCTGCAATCG
CTCCGGCGACATATAGCTACGGGTGCCCACAAAGGAGTTGGCCATCGAGT
CGATCAGTTGACCGGAGACGCCGAAATCACAGATCTTGATCTCGCCGCTG
CTATTGACGAGGATATTGCTCGGCTTCACGTCACGGTGGATGATGGCGTG
ATTGTCGCGCAGATAGCTCAAGCCCTTGAGCACCGCCAGCGTGATCCTGC
CGAGAATGGACTCTGGTATTCGACCGGCCCGCTTGAGGATCAGGTCAAGT
GATCCACCGTCCATATACTCCATGCAGATACTGATCTCGCCGTCGCTGTA
GAAGGCGCCGTAGAAACCGACAATGTGCGGGAAATTACATTCGTGCAGGA
CTTTCAGTTCGCGCAAGATCTGTTTCTTGATCGCCGGCTTCACCTCCAGA
TGGATCAGTTTCCTGGGCATGATCAGGTGTGTGTGCGTGTGCCGGACCTT
CATCACCACGCCGCCATTGCCCGATCCGAGCTCGCCCAGCTTCTCCAGAT
CCTC
BO09185.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15793-PA | 1191 | Dsor1-RA | 253..1188 | 954..19 | 4630 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:15:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RB | 1503 | CG15793-RB | 414..1349 | 954..19 | 4650 | 99.8 | Minus |
Dsor1-RA | 1799 | CG15793-RA | 710..1645 | 954..19 | 4650 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248684..9249181 | 954..457 | 2460 | 99.6 | Minus |
X | 23542271 | X | 9249374..9249701 | 457..130 | 1640 | 100 | Minus |
X | 23542271 | X | 9249772..9249883 | 130..19 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:15:34 has no hits.
BO09185.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:18 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-PA | 253..1191 | 18..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:40 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15793-PA | 253..1191 | 18..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:54:08 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 710..1645 | 19..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:35:02 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 710..1645 | 19..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:35:02 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9249375..9249701 | 130..456 | 100 | -> | Minus |
X | 9248684..9249181 | 457..954 | 99 | -> | Minus |
X | 9249773..9249883 | 19..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:54:08 Download gff for
BO09185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9142717..9143214 | 457..954 | 99 | -> | Minus |
arm_X | 9143408..9143734 | 130..456 | 100 | -> | Minus |
arm_X | 9143806..9143916 | 19..129 | 100 | | Minus |
BO09185.5prime Sequence
866 bp (767 high quality bases) assembled on 2006-01-10
> BO09185.5prime
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGC
BO09185.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15793-PA | 1191 | Dsor1-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1799 | CG15793-RA | 458..1307 | 17..866 | 4250 | 100 | Plus |
Dsor1-RB | 1503 | CG15793-RB | 171..1011 | 17..866 | 4105 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248542..9249181 | 127..766 | 3200 | 100 | Plus |
X | 23542271 | X | 9247799..9247908 | 17..126 | 550 | 100 | Plus |
X | 23542271 | X | 9249374..9249474 | 766..866 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:35:33 has no hits.
BO09185.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:19 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:42 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15793-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:15:43 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 449..1307 | 6..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:18 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 449..1307 | 6..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:18 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9247790..9247908 | 6..126 | 96 | -> | Plus |
X | 9248542..9249181 | 127..766 | 100 | -> | Plus |
X | 9249375..9249474 | 767..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:15:43 Download gff for
BO09185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9141823..9141941 | 6..126 | 96 | -> | Plus |
arm_X | 9142575..9143214 | 127..766 | 100 | -> | Plus |
arm_X | 9143408..9143507 | 767..866 | 100 | | Plus |
BO09185.complete Sequence
1222 bp (1222 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631423
> BO09185.complete
GAAGTTATCAGTCGACATGTCGAAGAACAAGCTGAATCTGGTGCTGCCGC
CGGTAAATACGGAGGCAACTGTTGCCGCCGCCACAGTGGCGCCGACGCCG
CCATTCAAAACCCCCTCGGGCACAGACACACACAGTTTGCTGGGGAAGCC
CAAGACGAGCATCGATGCGCTGACAGAGACGCTGGAGGGTCTGGACATGG
GCGACACGGAACGCAAGCGGATCAAGATGTTCCTCAGCCAGAAGGAGAAG
ATCGGCGAGCTGTCCGACGAGGATCTGGAGAAGCTGGGCGAGCTCGGATC
GGGCAATGGCGGCGTGGTGATGAAGGTCCGGCACACGCACACACACCTGA
TCATGGCCAGGAAACTGATCCATCTGGAGGTGAAGCCGGCGATCAAGAAA
CAGATCCTGCGCGAACTGAAAGTCCTGCACGAATGTAATTTCCCGCACAT
TGTCGGTTTCTACGGCGCCTTCTACAGCGACGGCGAGATCAGTATCTGCA
TGGAGTATATGGACGGTGGATCACTTGACCTGATCCTCAAGCGGGCCGGT
CGAATACCAGAGTCCATTCTCGGCAGGATCACGCTGGCGGTGCTCAAGGG
CTTGAGCTATCTGCGCGACAATCACGCCATCATCCACCGTGACGTGAAGC
CGAGCAATATCCTCGTCAATAGCAGCGGCGAGATCAAGATCTGTGATTTC
GGCGTCTCCGGTCAACTGATCGACTCGATGGCCAACTCCTTTGTGGGCAC
CCGTAGCTATATGTCGCCGGAGCGATTGCAGGGCACCCACTACTCCGTGC
AGTCGGACATCTGGTCGTTGGGTCTGTCGCTGGTGGAGATGGCCATCGGC
ATGTACCCCATCCCGCCGCCAAACACCGCCACCCTGGAGTCGATATTCGC
CGACAATGCGGAGGAGAGCGGCCAGCCGACGGACGAGCCCAGGGCAATGG
CCATCTTCGAGCTGCTGGATTATATTGTAAACGAACCGCCGCCCAAGCTA
GAGCACAAGATCTTCTCCACCGAGTTCAAGGACTTCGTGGACATCTGCCT
GAAGAAACAGCCCGACGAGCGGGCAGATCTCAAGACCCTGCTGAGTCATC
CGTGGATACGCAAGGCGGAATTGGAGGAGGTGGATATATCCGGCTGGGTG
TGCAAGACAATGGACCTGCCGCCATCGACGCCAAAGCGTAATACGTCGCC
CAACGCAAGCTTTCTAGACCAT
BO09185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1191 | CG15793-PA | 1..1188 | 17..1204 | 5940 | 100 | Plus |
Dsor1-RB | 1182 | CG15793-PB | 1..1179 | 17..1204 | 5770 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:24:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-RA | 1799 | CG15793-RA | 458..1645 | 17..1204 | 5940 | 100 | Plus |
Dsor1-RB | 1503 | CG15793-RB | 171..1349 | 17..1204 | 5770 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9248542..9249181 | 127..766 | 3200 | 100 | Plus |
X | 23542271 | X | 9249374..9249701 | 766..1093 | 1640 | 100 | Plus |
X | 23542271 | X | 9249772..9249883 | 1093..1204 | 560 | 100 | Plus |
X | 23542271 | X | 9247799..9247908 | 17..126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:24:01 has no hits.
BO09185.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:51 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 1..1191 | 17..1205 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:45 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 3..1192 | 15..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:59 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 458..1645 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:51 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 3..1192 | 15..1204 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:41 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dsor1-RA | 458..1645 | 17..1206 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:41 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9247799..9247908 | 17..126 | 100 | -> | Plus |
X | 9248542..9249181 | 127..766 | 100 | -> | Plus |
X | 9249375..9249701 | 767..1093 | 100 | -> | Plus |
X | 9249773..9249883 | 1094..1206 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:59 Download gff for
BO09185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9141832..9141941 | 17..126 | 100 | -> | Plus |
arm_X | 9142575..9143214 | 127..766 | 100 | -> | Plus |
arm_X | 9143408..9143734 | 767..1093 | 100 | -> | Plus |
arm_X | 9143806..9143916 | 1094..1206 | 98 | | Plus |
BO09185.pep Sequence
Translation from 16 to 1222
> BO09185.pep
MSKNKLNLVLPPVNTEATVAAATVAPTPPFKTPSGTDTHSLLGKPKTSID
ALTETLEGLDMGDTERKRIKMFLSQKEKIGELSDEDLEKLGELGSGNGGV
VMKVRHTHTHLIMARKLIHLEVKPAIKKQILRELKVLHECNFPHIVGFYG
AFYSDGEISICMEYMDGGSLDLILKRAGRIPESILGRITLAVLKGLSYLR
DNHAIIHRDVKPSNILVNSSGEIKICDFGVSGQLIDSMANSFVGTRSYMS
PERLQGTHYSVQSDIWSLGLSLVEMAIGMYPIPPPNTATLESIFADNAEE
SGQPTDEPRAMAIFELLDYIVNEPPPKLEHKIFSTEFKDFVDICLKKQPD
ERADLKTLLSHPWIRKAELEEVDISGWVCKTMDLPPSTPKRNTSPNASFL
DH
BO09185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsor1-PA | 396 | CG15793-PA | 1..396 | 1..396 | 2054 | 100 | Plus |
Dsor1-PB | 393 | CG15793-PB | 1..393 | 1..396 | 2023 | 99.2 | Plus |
lic-PA | 334 | CG12244-PA | 40..332 | 81..389 | 526 | 37.3 | Plus |
Mkk4-PC | 424 | CG9738-PC | 23..406 | 1..383 | 507 | 34.1 | Plus |
Mkk4-PB | 424 | CG9738-PB | 23..406 | 1..383 | 507 | 34.1 | Plus |