Clone Sequence Records
BO09186.3prime Sequence
925 bp (809 high quality bases) assembled on 2006-01-11
> BO09186.3prime
ATGGTCTAGAAAGCTTGCAGTGGTCCGCTGTCCCACTGACATGAATCCGG
ATGTGTTTGAAAAGTATTTGGCATTGGCCTCCGTCTGCGAACGCTCCGCC
GCCTGCGGATTCACAATCTCTAGACCTTGCAGTGGCGTAAAGGCCACACT
GGATGCCGTTCCGGAGATTTGGCGTTTGACCGTGGTGTTGCCGCCGTACA
CCTGCTGTTTCTGCAGATTCTTGTGCAACGTTTTGCTAATGCGCACCTTG
GTCTTCTCATCCACCTGGGGCAATCGGATGCGGCCGGTGCCAGTTTTGCC
GATGGTGCCGCGTGAATAGCCCAGATCTCCTTGGTAGGCATCCTCTTCGA
TGTCTCCGAAATTCATGCGGTTCGCTTGCTTGCGGAACTCTGTCAGCGCA
TATCGTTCCTTCATCTTGCGCACGCGTTTGCCTCCTCGCTTCTTCTTGCT
TCCCTCGATGGGTTTGGGCAGCGGCTTTATGAACTTCACCGGCGGCGGCT
CCTGCAGCTTGTCCAGCTTCTTTTCCACATCCTCCTTGAAGCGCAGTCCA
ATCTCCCCGTGGACACTCTCATGACAGGCATCAACACGAGCAGCCAGCAC
GGACTTGGCGGCCACCAAGCGAGCTGCCTTGCGTCGCAGATCTGGCGCAG
TATCCTGCACAATCTGTGAGTAGTACACATAGCCAGTGTGCGGCAACATC
TGCGTTTGTGAGAAGCCCGAGAGGGTTTTCTTTTGTGCACCCAACACCTG
AACATTGCAGGCCGGCATTTTGGATAATTTGGAAAGGCCACCAGCAATGC
CCAAGAGTTTAGCCGCCGTCGATGCTCCACAATCATGGAAAGATTTGGGG
CTATGAAAGTCATGCGACTTTCCACATACTCGTAGATCTTGGACTTGAAG
TTATTCAGTTCGATGGCCATTTCGC
BO09186.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6876-PA | 1506 | CG6876-RA | 693..1503 | 829..19 | 4055 | 100 | Minus |
CG6876-PA | 1506 | CG6876-RA | 596..692 | 925..829 | 460 | 98.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp31-RA | 1862 | CG6876-RA | 666..1573 | 925..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15159883..15160457 | 925..352 | 2810 | 99.7 | Minus |
3L | 28110227 | 3L | 15160517..15160849 | 351..19 | 1665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:08:58 has no hits.
BO09186.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:20 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-PA | 596..1506 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:43 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-PA | 596..1506 | 15..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:11 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 666..1577 | 14..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:55 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 666..1577 | 14..925 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:55 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15159883..15160457 | 352..925 | 99 | -> | Minus |
3L | 15160517..15160853 | 14..351 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:11 Download gff for
BO09186.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15152983..15153557 | 352..925 | 99 | -> | Minus |
arm_3L | 15153617..15153953 | 14..351 | 99 | | Minus |
BO09186.5prime Sequence
919 bp (805 high quality bases) assembled on 2006-01-10
> BO09186.5prime
GAAGTTATCAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCG
AGGAAGACAATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGT
GCAGAGGACGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAA
TCTGATGGACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGC
TGCGCGACTCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTAT
GCCAGTCGCCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGA
TCCAGAGTACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTG
ACAACGAGATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAG
CGATTCCCCGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCT
GGCGGTCAAGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGA
AGCTGCAGGCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACG
GCGTCCACCACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGAT
CGACGAGGCCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGA
TCTACGAGTATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCC
ATGATTGTTGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGG
CCTTTCCAAATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTG
CACAAAAGAAAACCCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCAC
ACTGGCTATGTGTACTACTCACAGATTGTGCAGGATACTGCGCCAGATCT
GCGACGCAGGGCAGCTCGC
BO09186.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6876-PA | 1506 | CG6876-RA | 1..903 | 17..919 | 4490 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp31-RA | 1862 | CG6876-RA | 71..973 | 17..919 | 4500 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15159325..15159776 | 116..567 | 2260 | 100 | Plus |
3L | 28110227 | 3L | 15159838..15160190 | 567..919 | 1750 | 99.7 | Plus |
3L | 28110227 | 3L | 15159170..15159268 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:42:40 has no hits.
BO09186.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:21 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:44 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-PA | 1..903 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:37 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 61..973 | 7..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:00 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 61..973 | 7..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:00 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15159160..15159268 | 7..115 | 96 | -> | Plus |
3L | 15159325..15159776 | 116..567 | 100 | -> | Plus |
3L | 15159839..15160190 | 568..919 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:37 Download gff for
BO09186.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15152260..15152368 | 7..115 | 96 | -> | Plus |
arm_3L | 15152425..15152876 | 116..567 | 100 | -> | Plus |
arm_3L | 15152939..15153290 | 568..919 | 99 | | Plus |
BO09186.complete Sequence
1537 bp (1537 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631424
> BO09186.complete
GAAGTTATCAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCG
AGGAAGACAATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGT
GCAGAGGACGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAA
TCTGATGGACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGC
TGCGCGACTCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTAT
GCCAGTCGCCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGA
TCCAGAGTACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTG
ACAACGAGATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAG
CGATTCCCCGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCT
GGCGGTCAAGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGA
AGCTGCAGGCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACG
GCGTCCACCACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGAT
CGACGAGGCCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGA
TCTACGAGTATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCC
ATGATTGTTGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGG
CCTTTCCAAATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTG
CACAAAAGAAAACCCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCAC
ACTGGCTATGTGTACTACTCACAGATTGTGCAGGATACTGCGCCAGATCT
GCGACGCAAGGCAGCTCGCTTGGTGGCCGCCAAGTCCGTGCTGGCTGCTC
GTGTTGATGCCTGTCATGAGAGTGTCCACGGGGAGATTGGACTGCGCTTC
AAGGAGGATGTGGAAAAGAAGCTGGACAAGCTGCAGGAGCCGCCGCCGGT
GAAGTTCATAAAGCCGCTGCCCAAACCCATCGAGGGAAGCAAGAAGAAGC
GAGGAGGCAAACGCGTGCGCAAGATGAAGGAACGATATGCGCTGACAGAG
TTCCGCAAGCAAGCGAACCGCATGAATTTCGGAGACATCGAAGAGGATGC
CTACCAAGGAGATCTGGGCTATTCACGCGGCACCATCGGCAAAACTGGCA
CCGGCCGCATCCGATTGCCCCAGGTGGATGAGAAGACCAAGGTGCGCATT
AGCAAAACGTTGCACAAGAATCTGCAGAAACAGCAGGTGTACGGCGGCAA
CACCACGGTCAAACGCCAAATCTCCGGAACGGCATCCAGTGTGGCCTTTA
CGCCACTGCAAGGTCTAGAGATTGTGAATCCGCAGGCGGCGGAGCGTTCG
CAGACGGAGGCCAATGCCAAATACTTTTCAAACACATCCGGATTCATGTC
AGTGGGACAGCGGACCACTGCAAGCTTTCTAGACCAT
BO09186.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp31-RA | 1506 | CG6876-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp31-RA | 1862 | CG6876-RA | 71..1573 | 17..1519 | 7515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15159838..15160457 | 567..1186 | 3100 | 100 | Plus |
3L | 28110227 | 3L | 15159325..15159776 | 116..567 | 2260 | 100 | Plus |
3L | 28110227 | 3L | 15160517..15160849 | 1187..1519 | 1665 | 100 | Plus |
3L | 28110227 | 3L | 15159170..15159268 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:11 has no hits.
BO09186.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:28 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-RA | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:30 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-RA | 78..1594 | 7..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:15 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 71..1573 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:28 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6876-RA | 78..1594 | 7..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:02 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prp31-RA | 71..1573 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:02 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15159170..15159268 | 17..115 | 100 | -> | Plus |
3L | 15159325..15159776 | 116..567 | 100 | -> | Plus |
3L | 15159839..15160457 | 568..1186 | 100 | -> | Plus |
3L | 15160517..15160849 | 1187..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:15 Download gff for
BO09186.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15152270..15152368 | 17..115 | 100 | -> | Plus |
arm_3L | 15152425..15152876 | 116..567 | 100 | -> | Plus |
arm_3L | 15152939..15153557 | 568..1186 | 100 | -> | Plus |
arm_3L | 15153617..15153949 | 1187..1521 | 99 | | Plus |
BO09186.pep Sequence
Translation from 16 to 1537
> BO09186.pep
MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD
VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL
IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL
GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE
MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS
KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA
RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP
LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL
GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR
QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT
TASFLDH
BO09186.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prp31-PA | 501 | CG6876-PA | 1..501 | 1..501 | 2508 | 100 | Plus |
nop5-PA | 511 | CG10206-PA | 162..401 | 100..341 | 323 | 31 | Plus |
Nop56-PA | 496 | CG13849-PA | 168..453 | 100..378 | 262 | 24.3 | Plus |