Clone BO09186 Report

Search the DGRC for BO09186

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptPrp31-RA
Protein status:BO09186.pep: validated full length
Sequenced Size:1537

Clone Sequence Records

BO09186.3prime Sequence

925 bp (809 high quality bases) assembled on 2006-01-11

> BO09186.3prime
ATGGTCTAGAAAGCTTGCAGTGGTCCGCTGTCCCACTGACATGAATCCGG
ATGTGTTTGAAAAGTATTTGGCATTGGCCTCCGTCTGCGAACGCTCCGCC
GCCTGCGGATTCACAATCTCTAGACCTTGCAGTGGCGTAAAGGCCACACT
GGATGCCGTTCCGGAGATTTGGCGTTTGACCGTGGTGTTGCCGCCGTACA
CCTGCTGTTTCTGCAGATTCTTGTGCAACGTTTTGCTAATGCGCACCTTG
GTCTTCTCATCCACCTGGGGCAATCGGATGCGGCCGGTGCCAGTTTTGCC
GATGGTGCCGCGTGAATAGCCCAGATCTCCTTGGTAGGCATCCTCTTCGA
TGTCTCCGAAATTCATGCGGTTCGCTTGCTTGCGGAACTCTGTCAGCGCA
TATCGTTCCTTCATCTTGCGCACGCGTTTGCCTCCTCGCTTCTTCTTGCT
TCCCTCGATGGGTTTGGGCAGCGGCTTTATGAACTTCACCGGCGGCGGCT
CCTGCAGCTTGTCCAGCTTCTTTTCCACATCCTCCTTGAAGCGCAGTCCA
ATCTCCCCGTGGACACTCTCATGACAGGCATCAACACGAGCAGCCAGCAC
GGACTTGGCGGCCACCAAGCGAGCTGCCTTGCGTCGCAGATCTGGCGCAG
TATCCTGCACAATCTGTGAGTAGTACACATAGCCAGTGTGCGGCAACATC
TGCGTTTGTGAGAAGCCCGAGAGGGTTTTCTTTTGTGCACCCAACACCTG
AACATTGCAGGCCGGCATTTTGGATAATTTGGAAAGGCCACCAGCAATGC
CCAAGAGTTTAGCCGCCGTCGATGCTCCACAATCATGGAAAGATTTGGGG
CTATGAAAGTCATGCGACTTTCCACATACTCGTAGATCTTGGACTTGAAG
TTATTCAGTTCGATGGCCATTTCGC

BO09186.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG6876-PA 1506 CG6876-RA 693..1503 829..19 4055 100 Minus
CG6876-PA 1506 CG6876-RA 596..692 925..829 460 98.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-RA 1862 CG6876-RA 666..1573 925..19 4500 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:08:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15159883..15160457 925..352 2810 99.7 Minus
3L 28110227 3L 15160517..15160849 351..19 1665 100 Minus
Blast to na_te.dros performed on 2015-02-10 19:08:58 has no hits.

BO09186.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:20 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6876-PA 596..1506 15..925 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:43 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6876-PA 596..1506 15..925 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:11 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 666..1577 14..925 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:55 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 666..1577 14..925 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:55 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15159883..15160457 352..925 99 -> Minus
3L 15160517..15160853 14..351 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:11 Download gff for BO09186.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15152983..15153557 352..925 99 -> Minus
arm_3L 15153617..15153953 14..351 99   Minus

BO09186.5prime Sequence

919 bp (805 high quality bases) assembled on 2006-01-10

> BO09186.5prime
GAAGTTATCAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCG
AGGAAGACAATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGT
GCAGAGGACGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAA
TCTGATGGACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGC
TGCGCGACTCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTAT
GCCAGTCGCCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGA
TCCAGAGTACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTG
ACAACGAGATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAG
CGATTCCCCGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCT
GGCGGTCAAGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGA
AGCTGCAGGCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACG
GCGTCCACCACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGAT
CGACGAGGCCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGA
TCTACGAGTATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCC
ATGATTGTTGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGG
CCTTTCCAAATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTG
CACAAAAGAAAACCCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCAC
ACTGGCTATGTGTACTACTCACAGATTGTGCAGGATACTGCGCCAGATCT
GCGACGCAGGGCAGCTCGC

BO09186.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6876-PA 1506 CG6876-RA 1..903 17..919 4490 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-RA 1862 CG6876-RA 71..973 17..919 4500 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15159325..15159776 116..567 2260 100 Plus
3L 28110227 3L 15159838..15160190 567..919 1750 99.7 Plus
3L 28110227 3L 15159170..15159268 17..115 495 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:42:40 has no hits.

BO09186.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:21 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6876-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:05:44 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6876-PA 1..903 17..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:10:37 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 61..973 7..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:27:00 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 61..973 7..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:27:00 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15159160..15159268 7..115 96 -> Plus
3L 15159325..15159776 116..567 100 -> Plus
3L 15159839..15160190 568..919 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:10:37 Download gff for BO09186.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15152260..15152368 7..115 96 -> Plus
arm_3L 15152425..15152876 116..567 100 -> Plus
arm_3L 15152939..15153290 568..919 99   Plus

BO09186.complete Sequence

1537 bp (1537 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631424

> BO09186.complete
GAAGTTATCAGTCGACATGTCGCTAGCCGATGAGCTTTTAGCCGATCTCG
AGGAAGACAATGACAATGAGCTGGAGGAGGAGGATTCGGAGATGGCCAGT
GCAGAGGACGAGAGCTTGCTGGCGGAGAAGCTGGCTAAGCCGGCTCCCAA
TCTGATGGACGTGGATGTAACCGTGCAGTCGGTGCGGGAACTGTGCAAGC
TGCGCGACTCTGAGCGCCTGAAGAACACGCTGCAGCAGATCGAGCACTAT
GCCAGTCGCCAGAGAACTGCAGCCGAAATGCTGGGATCCGTAGAATCCGA
TCCAGAGTACTGCCTCATCGTGGACGCTAATGCCATAGCTGTGGACATTG
ACAACGAGATCTCCATTGTGCACAAGTTCACCAAGGAGAAGTATCAGAAG
CGATTCCCCGAATTGGACTCCCTGATCGTGGGTGAAATCGAGTACTTGCT
GGCGGTCAAGGAGCTGGGCAACGACCTGGACCAGGTCAAAAATAACGAGA
AGCTGCAGGCTATTCTCACGCAGGCCACCATTATGATTGTGTCAGTCACG
GCGTCCACCACACAGGGAACCATGCTGACACCGGCGGAGAAGGCAAAGAT
CGACGAGGCCTGCGAAATGGCCATCGAACTGAATAACTTCAAGTCCAAGA
TCTACGAGTATGTGGAAAGTCGCATGACCTTCATAGCCCCAAATCTTTCC
ATGATTGTTGGAGCATCGACGGCGGCTAAACTCTTGGGCATTGCTGGTGG
CCTTTCCAAATTATCCAAAATGCCGGCCTGCAATGTTCAGGTGTTGGGTG
CACAAAAGAAAACCCTCTCGGGCTTCTCACAAACGCAGATGTTGCCGCAC
ACTGGCTATGTGTACTACTCACAGATTGTGCAGGATACTGCGCCAGATCT
GCGACGCAAGGCAGCTCGCTTGGTGGCCGCCAAGTCCGTGCTGGCTGCTC
GTGTTGATGCCTGTCATGAGAGTGTCCACGGGGAGATTGGACTGCGCTTC
AAGGAGGATGTGGAAAAGAAGCTGGACAAGCTGCAGGAGCCGCCGCCGGT
GAAGTTCATAAAGCCGCTGCCCAAACCCATCGAGGGAAGCAAGAAGAAGC
GAGGAGGCAAACGCGTGCGCAAGATGAAGGAACGATATGCGCTGACAGAG
TTCCGCAAGCAAGCGAACCGCATGAATTTCGGAGACATCGAAGAGGATGC
CTACCAAGGAGATCTGGGCTATTCACGCGGCACCATCGGCAAAACTGGCA
CCGGCCGCATCCGATTGCCCCAGGTGGATGAGAAGACCAAGGTGCGCATT
AGCAAAACGTTGCACAAGAATCTGCAGAAACAGCAGGTGTACGGCGGCAA
CACCACGGTCAAACGCCAAATCTCCGGAACGGCATCCAGTGTGGCCTTTA
CGCCACTGCAAGGTCTAGAGATTGTGAATCCGCAGGCGGCGGAGCGTTCG
CAGACGGAGGCCAATGCCAAATACTTTTCAAACACATCCGGATTCATGTC
AGTGGGACAGCGGACCACTGCAAGCTTTCTAGACCAT

BO09186.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-RA 1506 CG6876-PA 1..1503 17..1519 7515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-RA 1862 CG6876-RA 71..1573 17..1519 7515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15159838..15160457 567..1186 3100 100 Plus
3L 28110227 3L 15159325..15159776 116..567 2260 100 Plus
3L 28110227 3L 15160517..15160849 1187..1519 1665 100 Plus
3L 28110227 3L 15159170..15159268 17..115 495 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:37:11 has no hits.

BO09186.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:28 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 1..1506 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:30 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 78..1594 7..1524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:15 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 71..1573 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:28 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
CG6876-RA 78..1594 7..1524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:02 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
Prp31-RA 71..1573 17..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:02 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15159170..15159268 17..115 100 -> Plus
3L 15159325..15159776 116..567 100 -> Plus
3L 15159839..15160457 568..1186 100 -> Plus
3L 15160517..15160849 1187..1521 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:15 Download gff for BO09186.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15152270..15152368 17..115 100 -> Plus
arm_3L 15152425..15152876 116..567 100 -> Plus
arm_3L 15152939..15153557 568..1186 100 -> Plus
arm_3L 15153617..15153949 1187..1521 99   Plus

BO09186.pep Sequence

Translation from 16 to 1537

> BO09186.pep
MSLADELLADLEEDNDNELEEEDSEMASAEDESLLAEKLAKPAPNLMDVD
VTVQSVRELCKLRDSERLKNTLQQIEHYASRQRTAAEMLGSVESDPEYCL
IVDANAIAVDIDNEISIVHKFTKEKYQKRFPELDSLIVGEIEYLLAVKEL
GNDLDQVKNNEKLQAILTQATIMIVSVTASTTQGTMLTPAEKAKIDEACE
MAIELNNFKSKIYEYVESRMTFIAPNLSMIVGASTAAKLLGIAGGLSKLS
KMPACNVQVLGAQKKTLSGFSQTQMLPHTGYVYYSQIVQDTAPDLRRKAA
RLVAAKSVLAARVDACHESVHGEIGLRFKEDVEKKLDKLQEPPPVKFIKP
LPKPIEGSKKKRGGKRVRKMKERYALTEFRKQANRMNFGDIEEDAYQGDL
GYSRGTIGKTGTGRIRLPQVDEKTKVRISKTLHKNLQKQQVYGGNTTVKR
QISGTASSVAFTPLQGLEIVNPQAAERSQTEANAKYFSNTSGFMSVGQRT
TASFLDH

BO09186.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:41
Subject Length Description Subject Range Query Range Score Percent Strand
Prp31-PA 501 CG6876-PA 1..501 1..501 2508 100 Plus
nop5-PA 511 CG10206-PA 162..401 100..341 323 31 Plus
Nop56-PA 496 CG13849-PA 168..453 100..378 262 24.3 Plus