Clone Sequence Records
BO09194.3prime Sequence
838 bp (802 high quality bases) assembled on 2006-01-11
> BO09194.3prime
ATGGTCTAGAAAGCTTGCATTTCGCTTCTTGCGATTGGCAGCAATGGAAG
CGGATGAGCTGTTGCCCGTATCCGGGGTCTCGCTAATGGACAGACCCGTG
TCCAGCCGACTCTTGTCAACCGGATACAGCCAGCGCTGATACAGATAGAT
AATAAACACAATATCATCGCGCAGGCAGGCCACCCGATGGGCCGTGGGCA
TGGTGATGATGAAGGCGAAGAAGTCGTCGATGAAGGTATTAAATGCTTTA
TACATAAATGCGCGCCACGGCAATGCGGCCACAGACTTCAGCTTGTAGTT
TACAAACAGTTGCGGCAACATGAACAGGAAACCGAAGGCGTAAACTCCGT
TCACCAGTGAGTTAAGTGTCCATGAGTACCAGGAGCGGTGTGGTTGGTAG
AGGAGCGAATAGACCGCTCCGCATATACAAAGCGGATACAGCAGATAGCT
CAGATATCGCATGCCCTGTCTGTCAAACTGATCAGTCTTCTGCTCCTCCG
CCAGCTGACCTGACTTCACGCCAGCTTGGTCACCATTCCGCCGGTCAACT
TGCTCCAGCTTGCGACGAACCAGGCCACTGAAGCTAAGCTCCAGACGGAA
GATTTTCTTGCACTTCCACAGCTCAATGAGCGTGCCCAGGCCAACTGGCA
CAAGTACCAGATACGACGTATTCTCATCTAGCAGATAAAAAAAGATCACG
ATCTGCGAAAACGCTCGCCACATTGTGGTGCGGCTTGATAGCCCCTCGTA
CGACTGCTTTTTGCGCCAAAAGGCCACGTCGTTCTTAAAGCTTAAAAAGT
CGAAGAGCATATGGATGCTGGACACAAAGATGGTGCCA
BO09194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 1689 | CG4332-RA | 867..1686 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:09:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 925..1744 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13156069..13156860 | 810..19 | 3960 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:09:27 has no hits.
BO09194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:33 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 868..1689 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:01 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 868..1689 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 18:58:27 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 926..1751 | 12..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:29:26 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 926..1751 | 12..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:29:26 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155963..13155989 | 811..837 | 100 | -> | Minus |
| X | 13156069..13156867 | 12..810 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 18:58:27 Download gff for
BO09194.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049996..13050022 | 811..837 | 100 | -> | Minus |
| arm_X | 13050102..13050900 | 12..810 | 99 | | Minus |
BO09194.5prime Sequence
914 bp (823 high quality bases) assembled on 2006-01-11
> BO09194.5prime
GAAGTTATCAGTCGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCG
TTGCATTTCTGGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTC
TTCACTACGCTGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGC
GGACAGGCCACGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTC
CCATTGCCACCGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTAT
GATCAAAACTTTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCG
CCGGAATGGCTCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGC
CACTGGAATGGCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACG
ATGAGTCTCACGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCT
TGGAGATTCCGAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGA
AGAAAGCCTCCACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTT
TACGTCACCCTGCTCAACGATCTCTATTCCGTTTCGCAAGCGGATGTCCC
ACCTGAAATGGCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGC
CCATCCTGCAGACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCC
GTCACCCGCAATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGT
GGGCGTGGGCAAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGG
CGCTGCTCACCATTGGATTTGCTACCAGGATATTGACGAGGTGAAAGGCA
TCTTTTCGGACACAATGTATACCTTTTGTGTGGCACCATCTTTGTGTCCA
GCATCCATATGCTC
BO09194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 1689 | CG4332-RA | 1..811 | 17..827 | 4055 | 100 | Plus |
| CG4332-PA | 1689 | CG4332-RA | 849..900 | 863..914 | 260 | 100 | Plus |
| CG4332-PA | 1689 | CG4332-RA | 812..848 | 827..863 | 185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 56..958 | 14..914 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13155093..13155989 | 14..908 | 4385 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:52:16 has no hits.
BO09194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:34 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:03 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-PA | 1..900 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:18:52 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 54..958 | 10..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:15:58 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 54..958 | 10..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 07:15:58 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13155091..13155991 | 10..914 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:18:52 Download gff for
BO09194.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049124..13050024 | 10..914 | 99 | | Plus |
BO09194.complete Sequence
1720 bp (1720 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631425
> BO09194.complete
GAAGTTATCAGTCGACATGGCCCTGCCCTCGATCTCCACGCTTCTAGGCG
TTGCATTTCTGGCGTACATCGGCCACTCCATCTACCAGATGTCGCAGCTC
TTCACTACGCTGCAATGCAGCGGTGTGCCGTGCTACACATCATTCCTGGC
GGACAGGCCACGCCTGCAACTGGCATTGTTTTCCTCCCTCAGCAGAAGTC
CCATTGCCACCGAGGTGCGGGATCTGTACAAGGCCAAGAGGTTCGACTAT
GATCAAAACTTTGAGCACGACTTCGAAGTGGATGTGCCGCTGAGGACGCG
CCGGAATGGCTCCCTGTATCTTCATGTGGTCTTGGCCTTGGAGGGTGAGC
CACTGGAATGGCGTAGCCTGCGCAGAGATGGGCCCACCGTTGTCCATACG
ATGAGTCTCACGGATTACATAGTGCCGCGGGCGGAGGCCTTTAAACTGCT
TGGAGATTCCGAGAAAGGTGCAGCAGCCGCTGTCCAGGAGAAAGAAAAGA
AGAAAGCCTCCACCACTGGACGTCCCAGCACCCACATCCGATCGAATGTT
TACGTCACCCTGCTCAACGATCTCTATTCCGTTTCGCAAGCGGATGTCCC
ACCTGAAATGGCCCCCTTGATACGTGTCAATCGCAATCAACAGATCTTGC
CCATCCTGCAGACTGATACATTTAATACGCGGCTAAAGGATCTAGTGCCC
GTCACCCGCAATACCACCGAATTCACATTCAGCTTCCACTACAAGCCCGT
GGGCGTGGGCAAGCTCCGTCTAATGCTGCTCATGGAACACGCCACCCAGG
CGCTGCTCACCATTGGATTTGCTACCAAGGATATTGACGAGGTGAAAGGC
ATCTTTTCGGACACCAATGTATACCTTTTGTGTGGCACCATCTTTGTGTC
CAGCATCCATATGCTCTTCGACTTTTTAAGCTTTAAGAACGACGTGGCCT
TTTGGCGCAAAAAGCAGTCGTACGAGGGGCTATCAAGCCGCACCACAATG
TGGCGAGCGTTTTCGCAGATCGTGATCTTTTTTTATCTGCTAGATGAGAA
TACGTCGTATCTGGTACTTGTGCCAGTTGGCCTGGGCACGCTCATTGAGC
TGTGGAAGTGCAAGAAAATCTTCCGTCTGGAGCTTAGCTTCAGTGGCCTG
GTTCGTCGCAAGCTGGAGCAAGTTGACCGGCGGAATGGTGACCAAGCTGG
CGTGAAGTCAGGTCAGCTGGCGGAGGAGCAGAAGACTGATCAGTTTGACA
GACAGGGCATGCGATATCTGAGCTATCTGCTGTATCCGCTTTGTATATGC
GGAGCGGTCTATTCGCTCCTCTACCAACCACACCGCTCCTGGTACTCATG
GACACTTAACTCACTGGTGAACGGAGTTTACGCCTTCGGTTTCCTGTTCA
TGTTGCCGCAACTGTTTGTAAACTACAAGCTGAAGTCTGTGGCCGCATTG
CCGTGGCGCGCATTTATGTATAAAGCATTTAATACCTTCATCGACGACTT
CTTCGCCTTCATCATCACCATGCCCACGGCCCATCGGGTGGCCTGCCTGC
GCGATGATATTGTGTTTATTATCTATCTGTATCAGCGCTGGCTGTATCCG
GTTGACAAGAGTCGGCTGGACACGGGTCTGTCCATTAGCGAGACCCCGGA
TACGGGCAACAGCTCATCCGCTTCCATTGCTGCCAATCGCAAGAAGCGAA
ATGCAAGCTTTCTAGACCAT
BO09194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 1689 | CG4332-PA | 1..1686 | 17..1702 | 8430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-RA | 2256 | CG4332-RA | 56..1744 | 14..1702 | 8445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13155093..13155989 | 14..910 | 4485 | 100 | Plus |
| X | 23542271 | X | 13156069..13156860 | 911..1702 | 3960 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:09 has no hits.
BO09194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:21 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 1..1689 | 17..1705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:22 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 52..1749 | 10..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:01 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 59..1744 | 17..1704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:21 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 52..1749 | 10..1709 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:24 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4332-RA | 59..1744 | 17..1704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:24 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13156069..13156860 | 911..1704 | 99 | | Plus |
| X | 13155096..13155989 | 17..910 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:01 Download gff for
BO09194.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13049129..13050022 | 17..910 | 100 | -> | Plus |
| arm_X | 13050102..13050893 | 911..1704 | 99 | | Plus |
BO09194.pep Sequence
Translation from 16 to 1720
> BO09194.pep
MALPSISTLLGVAFLAYIGHSIYQMSQLFTTLQCSGVPCYTSFLADRPRL
QLALFSSLSRSPIATEVRDLYKAKRFDYDQNFEHDFEVDVPLRTRRNGSL
YLHVVLALEGEPLEWRSLRRDGPTVVHTMSLTDYIVPRAEAFKLLGDSEK
GAAAAVQEKEKKKASTTGRPSTHIRSNVYVTLLNDLYSVSQADVPPEMAP
LIRVNRNQQILPILQTDTFNTRLKDLVPVTRNTTEFTFSFHYKPVGVGKL
RLMLLMEHATQALLTIGFATKDIDEVKGIFSDTNVYLLCGTIFVSSIHML
FDFLSFKNDVAFWRKKQSYEGLSSRTTMWRAFSQIVIFFYLLDENTSYLV
LVPVGLGTLIELWKCKKIFRLELSFSGLVRRKLEQVDRRNGDQAGVKSGQ
LAEEQKTDQFDRQGMRYLSYLLYPLCICGAVYSLLYQPHRSWYSWTLNSL
VNGVYAFGFLFMLPQLFVNYKLKSVAALPWRAFMYKAFNTFIDDFFAFII
TMPTAHRVACLRDDIVFIIYLYQRWLYPVDKSRLDTGLSISETPDTGNSS
SASIAANRKKRNASFLDH
BO09194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4332-PA | 562 | CG4332-PA | 1..562 | 1..562 | 2908 | 100 | Plus |
| CG3702-PB | 641 | CG3702-PB | 141..596 | 79..535 | 662 | 31.6 | Plus |
| CG3702-PA | 641 | CG3702-PA | 141..596 | 79..535 | 662 | 31.6 | Plus |
