Clone BO09196 Report

Search the DGRC for BO09196

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:91
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG9911-RA
Protein status:BO09196.pep: validated full length
Sequenced Size:1270

Clone Sequence Records

BO09196.3prime Sequence

833 bp (773 high quality bases) assembled on 2006-01-11

> BO09196.3prime
ATGGTCTAGAAAGCTTGCCAGTTCATCTTTTTCTAGCAGGGTGTAGCGAT
GCTTGGATGGGCCAAGTTCCTTGAATTTGGACTCTGGTGGCGATGTACCC
TTGCCAGTGTGTGGGTCAGGTTCAATATCATTTGAGGGATCCGGCCCGTA
ATGAAATTCCCTGTGCAGCTTGCCACTGTAGAGATCCTGAAGGAACTGCT
TCAGCTTACCCGGCGAGTACATGTCACTGAAGTGGGGGAACAGATACATG
TGCTTGAACGAGTCGATGGCAATCAAGGGCAAGTCATCCTCGGATTTACC
CAGATGGTGCAGAGGATGCGCGAATCGCTTGCCATCGGCGGTCAAAAAGT
TGACGTTCTGTTTCTCATCCAGCAATTGACGCTCAATGATCGACTTGTAA
TCCTTGATAGAATTATGATCGGTTGGGTGGTGGAAGAGAATTAGGAACGG
CAGACCCTCCTCCGTAAGTTCCTCTGCATTCTCAAATGTTATTTCCCGCA
CCAGGGGTACACACTTCTCTTGGACCCAAATTTTGAGCTCATCGAAATTT
TGTAGGCTGCCAGTGTAGGTCTCATCGTTCTCATGAGACAGAGCTACATC
AGGTCTAAATACTATGATAGGTGTACCTGGTGGATGCATGGCCTGGGCGG
CATCTCCGAAGCCCACGTGGAACTGGCAGTCTTCCTTCAGATTTGTCGCC
ACCTTGCGGAATATGTCGTACTCTGGCTGGTCCCTACGATCGAAGTAGCC
CAGAATGAGGCGCTTCTTCGAGTCCAGTTTCTCCAGATCCTTCAGGGATT
TGAACTCCTGAATGGGATCCTCCAGCTGCTTCT

BO09196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-PD 1239 CG9911-RD 422..1236 833..19 4050 99.8 Minus
CG9911-PB 1239 CG9911-RB 422..1236 833..19 4050 99.8 Minus
CG9911-PA 1239 CG9911-RA 422..1236 833..19 4050 99.8 Minus
CG9911-PC 1128 CG9911-RC 311..1125 833..19 4050 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-RC 1364 CG9911-RC 504..1318 833..19 4060 99.9 Minus
CG9911-RA 1503 CG9911-RA 643..1457 833..19 4060 99.9 Minus
CG9911-RB 1426 CG9911-RB 566..1380 833..19 4060 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:23:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16294388..16294657 360..629 1350 100 Plus
X 23542271 X 16294723..16294931 625..833 1030 99.5 Plus
X 23542271 X 16294109..16294313 155..359 1010 99.5 Plus
X 23542271 X 16293899..16294043 19..163 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:23:03 has no hits.

BO09196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:35 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-PB 422..1239 15..833 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:04 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-PC 311..1128 15..833 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:51:08 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-RB 566..1383 15..833 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:14 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-RB 566..1383 15..833 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:14 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16294388..16294654 360..626 100 <- Plus
X 16294725..16294931 627..833 99   Plus
X 16293896..16294040 15..160 98 <- Plus
X 16294115..16294313 161..359 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:51:08 Download gff for BO09196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16187929..16188073 15..160 98 <- Plus
arm_X 16188148..16188346 161..359 100 <- Plus
arm_X 16188421..16188687 360..626 100 <- Plus
arm_X 16188758..16188964 627..833 99   Plus

BO09196.5prime Sequence

777 bp (775 high quality bases) assembled on 2006-01-11

> BO09196.5prime
GAAGTTATCAGTCGACATGTTTGGAGCCAGAATCGGAATCGGAAAGCTTG
GGCCGTGTGTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAG
CCGGCCGATGCCGCCGGAGCCGTGCCCATGACCAGTGATAATATCGATAT
GACCCTAGCGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGT
GTCGGTTTAGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAG
ATTAAAGAGGAGTTTCCAGAGGCTGGAAAAGTGGTGCTAGGCAAGGTCGA
TTGCGACAAGGAAACGGCCATCGCGTCCCGTTTCCACATAAACAAGTATC
CAACATTGAAAATTGTACGCAATGGGCAGCTCAGCAAGCGCGAATACCGA
GGACAGCGTTCAGCCGAAGCGTTCCTCGAGTTCGTCAAGAAGCAGCTGGA
GGATCCCATTCAGGAGTTCAAATCCCTGAAGGATCTGGAGAACCTGGACT
CGAAGAAGCGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAG
TACGACATATTCCGCAAGGTGGCGACAAATCTGAAGGAAGACTGCCAGTT
CCACGTGGGCTTCGGAGATGCCGCCCAGGCCATGCATCCACCAGGTACAC
CTATCATAGTATTTAGACCTGATGTAGCTCTGTCTCATGAGAACGATGAG
ACCTACACTGGCAGCCTACAAAATTTCGATGAGCTCAAAATTTGGGTCCA
AGAGAAGTGTGTACCCCTGGTGCGGGA

BO09196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-PD 1239 CG9911-RD 1..761 17..777 3805 100 Plus
CG9911-PB 1239 CG9911-RB 1..761 17..777 3805 100 Plus
CG9911-PA 1239 CG9911-RA 1..761 17..777 3805 100 Plus
CG9911-PC 1128 CG9911-RC 1..650 128..777 3250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:46:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-RA 1503 CG9911-RA 222..982 17..777 3805 100 Plus
CG9911-RB 1426 CG9911-RB 145..905 17..777 3805 100 Plus
CG9911-RD 1477 CG9911-RD 196..956 17..777 3805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16294723..16295120 646..249 1990 100 Minus
X 23542271 X 16294522..16294657 777..642 680 100 Minus
X 23542271 X 16295223..16295316 250..157 470 100 Minus
X 23542271 X 16296047..16296132 158..73 430 100 Minus
X 23542271 X 16296310..16296366 73..17 285 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:46:19 has no hits.

BO09196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:36 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-PB 1..760 17..776 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:06 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-PA 1..760 17..776 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:50:53 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 191..955 9..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:22 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 191..955 9..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:22 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16294523..16294654 645..776 100 <- Minus
X 16294725..16295118 251..644 100 <- Minus
X 16295223..16295314 159..250 100 <- Minus
X 16296047..16296131 74..158 100 <- Minus
X 16296310..16296371 9..73 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:50:53 Download gff for BO09196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16188556..16188687 645..776 100 <- Minus
arm_X 16188758..16189151 251..644 100 <- Minus
arm_X 16189256..16189347 159..250 100 <- Minus
arm_X 16190080..16190164 74..158 100 <- Minus
arm_X 16190343..16190404 9..73 93   Minus

BO09196.complete Sequence

1270 bp (1270 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631426

> BO09196.complete
GAAGTTATCAGTCGACATGTTTGGAGCCAGAATCGGAATCGGAAAGCTTG
GGCCGTGTGTGGCCCTAGTTGCGATTCTACAGCTACTCCAGTACACACAG
CCGGCCGATGCCGCCGGAGCCGTGCCCATGACCAGTGATAATATCGATAT
GACCCTAGCGTCTAATGAATTGGTTTTCCTTAATTTTTATGCGGAGTGGT
GTCGGTTTAGTAATATTTTAGCACCTATATTCGCGGAAGCTGCAGATAAG
ATTAAAGAGGAGTTTCCAGAGGCTGGAAAAGTGGTGCTAGGCAAGGTCGA
TTGCGACAAGGAAACGGCCATCGCGTCCCGTTTCCACATAAACAAGTATC
CAACATTGAAAATTGTACGCAATGGGCAGCTCAGCAAGCGCGAATACCGA
GGACAGCGTTCAGCCGAAGCGTTCCTCGAGTTCGTCAAGAAGCAGCTGGA
GGATCCCATTCAGGAGTTCAAATCCCTGAAGGATCTGGAGAACCTGGACT
CGAAGAAGCGCCTCATTCTGGGCTACTTCGATCGTAGGGACCAGCCAGAG
TACGACATATTCCGCAAGGTGGCGACAAATCTGAAGGAAGACTGCCAGTT
CCACGTGGGCTTCGGAGATGCCGCCCAGGCCATGCATCCACCAGGTACAC
CTATCATAGTATTTAGACCTGATGTAGCTCTGTCTCATGAGAACGATGAG
ACCTACACTGGCAGCCTACAAAATTTCGATGAGCTCAAAATTTGGGTCCA
AGAGAAGTGTGTACCCCTGGTGCGGGAAATAACATTTGAGAATGCAGAGG
AACTTACGGAGGAGGGTCTGCCGTTCCTAATTCTCTTCCACCACCCAACC
GATCATAATTCTATCAAGGATTACAAGTCGATCATTGAGCGTCAATTGCT
GGATGAGAAACAGAACGTCAACTTTTTGACCGCCGATGGCAAGCGATTCG
CGCATCCTCTGCACCATCTGGGTAAATCCGAGGATGACTTGCCCTTGATT
GCCATCGACTCGTTCAAGCACATGTATCTGTTCCCCCACTTCAGTGACAT
GTACTCGCCGGGTAAGCTGAAGCAGTTCCTTCAGGATCTCTACAGTGGCA
AGCTGCACAGGGAATTTCATTACGGGCCGGATCCCTCAAATGATATTGAA
CCTGACCCACACACTGGCAAGGGTACATCGCCACCAGAGTCCAAATTCAA
GGAACTTGGCCCATCCAAGCATCGCTACACCCTGCTAGAAAAAGATGAAC
TGGCAAGCTTTCTAGACCAT

BO09196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-RA 1239 CG9911-PA 1..1236 17..1252 6180 100 Plus
CG9911-RB 1239 CG9911-PB 1..1236 17..1252 6180 100 Plus
CG9911-RD 1239 CG9911-PD 1..1236 17..1252 6180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-RA 1503 CG9911-RA 222..1457 17..1252 6180 100 Plus
CG9911-RB 1426 CG9911-RB 145..1380 17..1252 6180 100 Plus
CG9911-RD 1477 CG9911-RD 196..1431 17..1252 6180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16294723..16295120 646..249 1990 100 Minus
X 23542271 X 16294388..16294657 911..642 1350 100 Minus
X 23542271 X 16294109..16294313 1116..912 1010 99.5 Minus
X 23542271 X 16293899..16294043 1252..1108 725 100 Minus
X 23542271 X 16295223..16295316 250..157 470 100 Minus
X 23542271 X 16296047..16296132 158..73 430 100 Minus
X 23542271 X 16296310..16296366 73..17 285 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:55:02 has no hits.

BO09196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:31 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 1..1239 17..1256 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:32 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 192..1435 9..1256 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:55 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 202..1431 23..1254 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:31 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RA 192..1435 9..1256 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:34:15 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
CG9911-RD 202..1431 23..1254 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:34:15 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
X 16293897..16294040 1111..1254 98 <- Minus
X 16294115..16294313 912..1110 100 <- Minus
X 16294388..16294654 645..911 100 <- Minus
X 16294725..16295118 251..644 100 <- Minus
X 16295223..16295314 159..250 100 <- Minus
X 16296047..16296131 74..158 100 <- Minus
X 16296310..16296360 23..73 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:55 Download gff for BO09196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16187930..16188073 1111..1254 98 <- Minus
arm_X 16188148..16188346 912..1110 100 <- Minus
arm_X 16188421..16188687 645..911 100 <- Minus
arm_X 16188758..16189151 251..644 100 <- Minus
arm_X 16189256..16189347 159..250 100 <- Minus
arm_X 16190080..16190164 74..158 100 <- Minus
arm_X 16190343..16190393 23..73 100   Minus

BO09196.pep Sequence

Translation from 16 to 1270

> BO09196.pep
MFGARIGIGKLGPCVALVAILQLLQYTQPADAAGAVPMTSDNIDMTLASN
ELVFLNFYAEWCRFSNILAPIFAEAADKIKEEFPEAGKVVLGKVDCDKET
AIASRFHINKYPTLKIVRNGQLSKREYRGQRSAEAFLEFVKKQLEDPIQE
FKSLKDLENLDSKKRLILGYFDRRDQPEYDIFRKVATNLKEDCQFHVGFG
DAAQAMHPPGTPIIVFRPDVALSHENDETYTGSLQNFDELKIWVQEKCVP
LVREITFENAEELTEEGLPFLILFHHPTDHNSIKDYKSIIERQLLDEKQN
VNFLTADGKRFAHPLHHLGKSEDDLPLIAIDSFKHMYLFPHFSDMYSPGK
LKQFLQDLYSGKLHREFHYGPDPSNDIEPDPHTGKGTSPPESKFKELGPS
KHRYTLLEKDELASFLDH

BO09196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9911-PA 412 CG9911-PA 1..412 1..412 2180 100 Plus
CG9911-PB 412 CG9911-PB 1..412 1..412 2180 100 Plus
CG9911-PD 412 CG9911-PD 1..412 1..412 2180 100 Plus
CG9911-PC 375 CG9911-PC 1..375 38..412 1994 100 Plus
CG10029-PB 410 CG10029-PB 4..410 8..412 1040 49.9 Plus