Clone Sequence Records
BO09202.3prime Sequence
894 bp (784 high quality bases) assembled on 2006-01-18
> BO09202.3prime
ATGGTCTAGAAAGCTTGCGAAATCCGCGTCCAGGGTGAACACGTTGTCCA
GGGGGTTGCTGACCACTCCCATGCGCTGGTACTCCCCCACCTTCTTCTCA
AAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAAGGG
GTTTTTGGTGTTGTAGATCTTTCCAACGCCCAACTCCACGAGCAAACGGT
CCGCTACGAACTCAATGTACTGGGACATCAGGTCGCAATTCATGCCAATC
AAATTGACGGGCAGGGCATCGGTAAGGAACTCCTGCTCAATGGCCACCGC
GTCGCGGATGATCTCGATGATGCGCTCGCGCTTGGGTCGCTGCACCAGGT
GTTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAG
ATAAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCTCGCTTCTTAAG
CCAGAAAATGGAAGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGG
CAAAGGCGATGATGCGTTCCCCGAAGTTGGCCGATTTGGAGGAGATCCAG
GACAGGGCCCAGTCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGC
GTTAAACAGGTACTCTCGCTGGTGTGGATCACGGATGTAAGTGTCGATCA
AAACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGAAAGCCG
TAGAAGCAACGTGCCTCCGTGATCTGCACCTCCTGACTGAAGCGCTCCAC
CAGGTTCTCGTTTACGATGCCGTCGGAGGCGGCGAAGAAGGCAAGCACGT
GCGAGAATGAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAATCAGTAAGG
TCCTTGGACAAATCCACCTCCTCGACAGTCCAGAAAGAAGCCTC
BO09202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8975-PA | 1182 | RnrS-RA | 392..1179 | 806..19 | 3940 | 100 | Minus |
| CG8975-PA | 1182 | RnrS-RA | 304..388 | 894..810 | 425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-RA | 1593 | CG8975-RA | 431..1306 | 894..19 | 4335 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11983432..11984307 | 19..894 | 4335 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:52:19 has no hits.
BO09202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:37 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-PA | 304..1182 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:07 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8975-PA | 304..1182 | 18..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:08:18 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 431..1306 | 19..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:48 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 431..1306 | 19..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:48 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11983432..11984307 | 19..894 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:08:18 Download gff for
BO09202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7870937..7871812 | 19..894 | 99 | | Plus |
BO09202.5prime Sequence
972 bp (798 high quality bases) assembled on 2006-01-17
> BO09202.5prime
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTCCNACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCATTGAGCAGGAGTTCCTACCGATGCCCTG
CCCGTCAATTTGATTGGCATGA
BO09202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8975-PA | 1182 | RnrS-RA | 1..905 | 17..921 | 4506 | 99.8 | Plus |
| CG8975-PA | 1182 | RnrS-RA | 924..958 | 938..972 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-RA | 1593 | CG8975-RA | 128..1085 | 17..972 | 4729 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11983653..11984312 | 972..315 | 3189 | 99.5 | Minus |
| 2R | 25286936 | 2R | 11984818..11985069 | 317..66 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 11985216..11985266 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:30:48 has no hits.
BO09202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:38 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-PA | 1..957 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:08 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8975-PA | 1..957 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:14:46 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 121..1084 | 7..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:01 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 121..1084 | 7..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:01 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11984819..11985067 | 68..316 | 100 | <- | Minus |
| 2R | 11985216..11985273 | 7..67 | 93 | | Minus |
| 2R | 11983654..11984310 | 317..971 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:14:46 Download gff for
BO09202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7871159..7871815 | 317..971 | 99 | <- | Minus |
| arm_2R | 7872324..7872572 | 68..316 | 100 | <- | Minus |
| arm_2R | 7872721..7872778 | 7..67 | 93 | | Minus |
BO09202.complete Sequence
1213 bp (1213 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631427
> BO09202.complete
GAAGTTATCAGTCGACATGGCGTCCAAGGAAAACATTGCTGACAACATGG
AGAAGTTCTCGCTTAAGAGCCCGAGCAAGAAGATTCTGACGGATAGCACC
AACAACGTTCGCAAGATGTCCATTGGACACGAGGCAAACGGACAGTTGGC
CAAGGAGTCCTCCACCGTGAATGGCATCGGCAAGTCTGCCAATTCCCTCA
TGGAGAAGTCCGTAACCCCCTTCGACCCGTCGCTGGAGCCCCTTCTGCGC
GAGAATCCCCGACGCTTCGTCATCTTTCCCATCCAGTACCACGACATCTG
GCAGATGTACAAGAAGGCTGAGGCTTCTTTCTGGACTGTCGAGGAGGTGG
ATTTGTCCAAGGACCTTACTGATTGGCACCGCCTGAAGGACGACGAGCGC
CATTTCATCTCGCACGTGCTTGCCTTCTTCGCCGCCTCCGACGGCATCGT
AAACGAGAACCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGATCACGGAGG
CACGTTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAG
ATGTACAGTGTTTTGATCGACACTTACATCCGTGATCCACACCAGCGAGA
GTACCTGTTTAACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAG
ACTGGGCCCTGTCCTGGATCTCCTCCAAATCGGCCAACTTCGGGGAACGC
ATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCGC
TTCCATTTTCTGGCTTAAGAAGCGAGGTCTGATGCCTGGATTGACCTTCT
CCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG
CTGATGTTCCAACACCTGGTGCAGCGACCCAAGCGCGAGCGCATCATCGA
GATCATCCGCGACGCGGTGGCCATTGAGCAGGAGTTCCTTACCGATGCCC
TGCCCGTCAATTTGATTGGCATGAATTGCGACCTGATGTCCCAGTACATT
GAGTTCGTAGCGGACCGTTTGCTCGTGGAGTTGGGCGTTGGAAAGATCTA
CAACACCAAAAACCCCTTTAACTTCATGGAGATGATATCGCTGGATGGAA
AGACCAACTTTTTTGAGAAGAAGGTGGGGGAGTACCAGCGCATGGGAGTG
GTCAGCAACCCCCTGGACAACGTGTTCACCCTGGACGCGGATTTCGCAAG
CTTTCTAGACCAT
BO09202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-RA | 1182 | CG8975-PA | 1..1179 | 17..1195 | 5895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-RA | 1593 | CG8975-RA | 128..1306 | 17..1195 | 5895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11983432..11984312 | 1195..315 | 4405 | 100 | Minus |
| 2R | 25286936 | 2R | 11984818..11985069 | 317..66 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 11985216..11985266 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:04:51 has no hits.
BO09202.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:32 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 1..1182 | 17..1196 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:33 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 171..1356 | 7..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:27 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 128..1306 | 17..1197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:32 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 171..1356 | 7..1195 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:28 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RnrS-RA | 128..1306 | 17..1197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:28 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11984819..11985067 | 68..316 | 100 | <- | Minus |
| 2R | 11985216..11985266 | 17..67 | 100 | | Minus |
| 2R | 11983430..11984310 | 317..1197 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:27 Download gff for
BO09202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7870935..7871815 | 317..1197 | 99 | <- | Minus |
| arm_2R | 7872324..7872572 | 68..316 | 100 | <- | Minus |
| arm_2R | 7872721..7872771 | 17..67 | 100 | | Minus |
BO09202.pep Sequence
Translation from 16 to 1213
> BO09202.pep
MASKENIADNMEKFSLKSPSKKILTDSTNNVRKMSIGHEANGQLAKESST
VNGIGKSANSLMEKSVTPFDPSLEPLLRENPRRFVIFPIQYHDIWQMYKK
AEASFWTVEEVDLSKDLTDWHRLKDDERHFISHVLAFFAASDGIVNENLV
ERFSQEVQITEARCFYGFQIAMENVHSEMYSVLIDTYIRDPHQREYLFNA
IETMPAVKRKADWALSWISSKSANFGERIIAFAAVEGIFFSGSFASIFWL
KKRGLMPGLTFSNELISRDEGLHCDFAVLMFQHLVQRPKRERIIEIIRDA
VAIEQEFLTDALPVNLIGMNCDLMSQYIEFVADRLLVELGVGKIYNTKNP
FNFMEMISLDGKTNFFEKKVGEYQRMGVVSNPLDNVFTLDADFASFLDH
BO09202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RnrS-PA | 393 | CG8975-PA | 1..393 | 1..393 | 2032 | 100 | Plus |
