Clone BO09206 Report

Search the DGRC for BO09206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptOte-RA
Protein status:BO09206.pep: validated full length
Sequenced Size:1306

Clone Sequence Records

BO09206.3prime Sequence

985 bp (854 high quality bases) assembled on 2006-01-18

> BO09206.3prime
ATGGTCTAGAAAGCTTGCGTAGAATATGTAATAAACGCCGATTAACAAAA
GGACGAGGAGTACAATGAACAGCTTCGACTTGATGTGATACTTCTGCTCC
AGGCTGTTCAACCAACGGTTAAAGGCCTCGGATACGCTGTTATCATTCGG
GCGCAAGGAGCGCCTGGCACGCGGCTCATAGCCGAGAGAACCGCTACCCG
CGTTTCCACTGGCCAGAGTGCGTCTGGAATACGGGCTGATGCGATCTCCA
ATCCGTTCGGCTCGCAAACGAGCTAGATTCCTGGCAAATGTGCTTTCGTA
CTGGTCTTCCTTGGAATCAGTGTCGTCGCTCAGCTCGTTAGCATAGGTAC
GCTTGTAGCTGGATGAGTAGGAGGCCACCGGCGGAGCCTCTGCAGTCACA
TAGCCTTGGGCTGCAGTACGCACAAAACTGCTATAGCGACCGGGTGCTGG
GTTGCTCGCATAGTCATAGGACCTGGTGGAACTGGTGGTCTGCGCTCTGG
CAGATGGCACAGATGGCGGCAGCACGGGAGCTGCTGTCGCTTCATAGACC
TGTCGGCGTGGAGGCTCCACAACCTTGCTTTTGTACTCGTACGTAGTGGT
GCCGCTGCTTGCGAGCTTCGTGGTCTTCTGTCTGGCCGCGTGCTCCTGCT
CCACCAGATCTGCAGCCTGGACTAGCTGCTCGTCCTCTTCTTCATCGGAC
TCTAGGACAATCAGGGAGTTGACCTTAAGATAATTCTCCTCTCGATCAGC
GCGCTTCGAGGAAGCCGGTTGCTCAACAATGGTTTCTGGCTTCCTCAAGG
GCTCCACTACTTTCCTTTCAGACCCCGAGGAGGTGGAAGTGCGCCGGGTC
TGTACGGGTTGAGCAGCAGGAGCAGTTGTTGGCTTCCTGGCGGCAACGGG
CTCCTCGGATCGTAGGCGGTCGGCTTCGTCGGGGCGTCGGCGTATAGCTT
CCTCGGGTATCGACGCACTGGTTCCCTGGCCTCTG

BO09206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5581-PA 1275 Ote-RA 332..1272 959..19 4705 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-RA 1571 CG5581-RA 403..1370 985..19 4800 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18275808..18276775 19..985 4775 99.8 Plus
Blast to na_te.dros performed on 2015-02-01 06:49:04 has no hits.

BO09206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:41 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
Ote-PA 305..1275 16..985 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:12 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5581-PA 305..1275 16..985 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:42 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 403..1370 19..985 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:18 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 403..1370 19..985 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:18 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18275808..18276775 19..985 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:42 Download gff for BO09206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14163313..14164280 19..985 99   Plus

BO09206.5prime Sequence

919 bp (753 high quality bases) assembled on 2006-01-18

> BO09206.5prime
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCA
AGGCTATGTGACTGCAGAG

BO09206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5581-PA 1275 Ote-RA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-RA 1571 CG5581-RA 99..1001 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18276177..18277079 919..17 4515 100 Minus
Blast to na_te.dros performed on 2015-02-04 03:57:30 has no hits.

BO09206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:42 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
Ote-PA 1..903 17..919 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:14 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5581-PA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:20 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 93..1001 9..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:19 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 93..1001 9..919 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:19 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18276177..18277085 9..919 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:20 Download gff for BO09206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14163682..14164590 9..919 99   Minus

BO09206.complete Sequence

1306 bp (1306 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631428

> BO09206.complete
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCA
AGGCTATGTGACTGCAGAGGCTCCGCCGGTGGCCTCCTACTCATCCAGCT
ACAAGCGTACCTATGCTAACGAGCTGAGCGACGACACTGATTCCAAGGAA
GACCAGTACGAAAGCACATTTGCCAGGAATCTAGCTCGTTTGCGAGCCGA
ACGGATTGGAGATCGCATCAGCCCGTATTCCAGACGCACTCTGGCCAGTG
GAAACGCGGGTAGCGGTTCTCTCGGCTATGAGCCGCGTGCCAGGCGCTCC
TTGCGCCCGAATGATAACAGCGTATCCGAGGCCTTTAACCGTTGGTTGAA
CAGCCTGGAGCAGAAGTATCACATCAAGTCGAAGCTGTTCATTGTACTCC
TCGTCCTTTTGTTAATCGGCGTTTATTACATATTCTACGCAAGCTTTCTA
GACCAT

BO09206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-RA 1275 CG5581-PA 1..1272 17..1288 6360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-RA 1571 CG5581-RA 99..1370 17..1288 6360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18275808..18277079 1288..17 6360 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:45:24 has no hits.

BO09206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:33 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 1..1275 17..1291 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:35 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 109..1386 9..1288 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:59 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 99..1370 17..1290 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:33 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 109..1386 9..1288 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:28 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
Ote-RA 99..1370 17..1290 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:28 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18275804..18277079 17..1290 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:59 Download gff for BO09206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14163309..14164584 17..1290 99   Minus

BO09206.pep Sequence

Translation from 16 to 1306

> BO09206.pep
MADVDDFDSLSNAELRAKMLAQGLPNIPVTDSSRKVLVKRLRASIGGQAS
PAASPKKTNRRETLAPAPGAPSAPAAASTPVDKLDGNKVAPATKARRTIT
AAEAKEPVRRLPEEAIRRRPDEADRLRSEEPVAARKPTTAPAAQPVQTRR
TSTSSGSERKVVEPLRKPETIVEQPASSKRADREENYLKVNSLIVLESDE
EEDEQLVQAADLVEQEHAARQKTTKLASSGTTTYEYKSKVVEPPRRQVYE
ATAAPVLPPSVPSARAQTTSSTRSYDYASNPAPGRYSSFVRTAAQGYVTA
EAPPVASYSSSYKRTYANELSDDTDSKEDQYESTFARNLARLRAERIGDR
ISPYSRRTLASGNAGSGSLGYEPRARRSLRPNDNSVSEAFNRWLNSLEQK
YHIKSKLFIVLLVLLLIGVYYIFYASFLDH

BO09206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Ote-PA 424 CG5581-PA 1..424 1..424 2116 100 Plus
bocksbeutel-PB 399 CG9424-PB 1..394 1..422 189 23.9 Plus
bocksbeutel-PA 351 CG9424-PA 1..249 1..283 173 25.1 Plus