Clone Sequence Records
BO09206.3prime Sequence
985 bp (854 high quality bases) assembled on 2006-01-18
> BO09206.3prime
ATGGTCTAGAAAGCTTGCGTAGAATATGTAATAAACGCCGATTAACAAAA
GGACGAGGAGTACAATGAACAGCTTCGACTTGATGTGATACTTCTGCTCC
AGGCTGTTCAACCAACGGTTAAAGGCCTCGGATACGCTGTTATCATTCGG
GCGCAAGGAGCGCCTGGCACGCGGCTCATAGCCGAGAGAACCGCTACCCG
CGTTTCCACTGGCCAGAGTGCGTCTGGAATACGGGCTGATGCGATCTCCA
ATCCGTTCGGCTCGCAAACGAGCTAGATTCCTGGCAAATGTGCTTTCGTA
CTGGTCTTCCTTGGAATCAGTGTCGTCGCTCAGCTCGTTAGCATAGGTAC
GCTTGTAGCTGGATGAGTAGGAGGCCACCGGCGGAGCCTCTGCAGTCACA
TAGCCTTGGGCTGCAGTACGCACAAAACTGCTATAGCGACCGGGTGCTGG
GTTGCTCGCATAGTCATAGGACCTGGTGGAACTGGTGGTCTGCGCTCTGG
CAGATGGCACAGATGGCGGCAGCACGGGAGCTGCTGTCGCTTCATAGACC
TGTCGGCGTGGAGGCTCCACAACCTTGCTTTTGTACTCGTACGTAGTGGT
GCCGCTGCTTGCGAGCTTCGTGGTCTTCTGTCTGGCCGCGTGCTCCTGCT
CCACCAGATCTGCAGCCTGGACTAGCTGCTCGTCCTCTTCTTCATCGGAC
TCTAGGACAATCAGGGAGTTGACCTTAAGATAATTCTCCTCTCGATCAGC
GCGCTTCGAGGAAGCCGGTTGCTCAACAATGGTTTCTGGCTTCCTCAAGG
GCTCCACTACTTTCCTTTCAGACCCCGAGGAGGTGGAAGTGCGCCGGGTC
TGTACGGGTTGAGCAGCAGGAGCAGTTGTTGGCTTCCTGGCGGCAACGGG
CTCCTCGGATCGTAGGCGGTCGGCTTCGTCGGGGCGTCGGCGTATAGCTT
CCTCGGGTATCGACGCACTGGTTCCCTGGCCTCTG
BO09206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5581-PA | 1275 | Ote-RA | 332..1272 | 959..19 | 4705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:49:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ote-RA | 1571 | CG5581-RA | 403..1370 | 985..19 | 4800 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18275808..18276775 | 19..985 | 4775 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:49:04 has no hits.
BO09206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:41 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-PA | 305..1275 | 16..985 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:12 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5581-PA | 305..1275 | 16..985 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:42 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 403..1370 | 19..985 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:18 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 403..1370 | 19..985 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:18 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18275808..18276775 | 19..985 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:42 Download gff for
BO09206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14163313..14164280 | 19..985 | 99 | | Plus |
BO09206.5prime Sequence
919 bp (753 high quality bases) assembled on 2006-01-18
> BO09206.5prime
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCA
AGGCTATGTGACTGCAGAG
BO09206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5581-PA | 1275 | Ote-RA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ote-RA | 1571 | CG5581-RA | 99..1001 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18276177..18277079 | 919..17 | 4515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 03:57:30 has no hits.
BO09206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:42 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:14 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5581-PA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:20 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 93..1001 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:19 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 93..1001 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:19 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18276177..18277085 | 9..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:20 Download gff for
BO09206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14163682..14164590 | 9..919 | 99 | | Minus |
BO09206.complete Sequence
1306 bp (1306 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631428
> BO09206.complete
GAAGTTATCAGTCGACATGGCCGATGTGGACGATTTTGATTCTCTGTCCA
ATGCTGAGTTGCGCGCCAAGATGCTGGCACAGGGGCTGCCCAACATCCCC
GTGACGGATAGCAGCCGGAAGGTTCTAGTAAAGCGTCTGCGCGCCTCCAT
TGGTGGCCAGGCGTCGCCGGCCGCTAGTCCCAAGAAGACCAACAGGCGGG
AGACCCTGGCTCCCGCACCTGGTGCACCATCTGCTCCGGCGGCAGCCTCC
ACGCCGGTGGACAAGCTGGATGGCAACAAGGTGGCGCCCGCCACAAAGGC
TCGGCGCACAATTACCGCTGCAGAGGCCAAGGAACCAGTGCGTCGATTAC
CCGAGGAAGCTATACGCCGACGCCCCGACGAAGCCGACCGCCTACGATCC
GAGGAGCCCGTTGCCGCCAGGAAGCCAACAACTGCTCCTGCTGCTCAACC
CGTACAGACCCGGCGCACTTCCACCTCCTCGGGGTCTGAAAGGAAAGTAG
TGGAGCCCTTGAGGAAGCCAGAAACCATTGTTGAGCAACCGGCTTCCTCG
AAGCGCGCTGATCGAGAGGAGAATTATCTTAAGGTCAACTCCCTGATTGT
CCTAGAGTCCGATGAAGAAGAGGACGAGCAGCTAGTCCAGGCTGCAGATC
TGGTGGAGCAGGAGCACGCGGCCAGACAGAAGACCACGAAGCTCGCAAGC
AGCGGCACCACTACGTACGAGTACAAAAGCAAGGTTGTGGAGCCTCCACG
CCGACAGGTCTATGAAGCGACAGCAGCTCCCGTGCTGCCGCCATCTGTGC
CATCTGCCAGAGCGCAGACCACCAGTTCCACCAGGTCCTATGACTATGCG
AGCAACCCAGCACCCGGTCGCTATAGCAGTTTTGTGCGTACTGCAGCCCA
AGGCTATGTGACTGCAGAGGCTCCGCCGGTGGCCTCCTACTCATCCAGCT
ACAAGCGTACCTATGCTAACGAGCTGAGCGACGACACTGATTCCAAGGAA
GACCAGTACGAAAGCACATTTGCCAGGAATCTAGCTCGTTTGCGAGCCGA
ACGGATTGGAGATCGCATCAGCCCGTATTCCAGACGCACTCTGGCCAGTG
GAAACGCGGGTAGCGGTTCTCTCGGCTATGAGCCGCGTGCCAGGCGCTCC
TTGCGCCCGAATGATAACAGCGTATCCGAGGCCTTTAACCGTTGGTTGAA
CAGCCTGGAGCAGAAGTATCACATCAAGTCGAAGCTGTTCATTGTACTCC
TCGTCCTTTTGTTAATCGGCGTTTATTACATATTCTACGCAAGCTTTCTA
GACCAT
BO09206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ote-RA | 1275 | CG5581-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ote-RA | 1571 | CG5581-RA | 99..1370 | 17..1288 | 6360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18275808..18277079 | 1288..17 | 6360 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:45:24 has no hits.
BO09206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:33 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 1..1275 | 17..1291 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:35 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 109..1386 | 9..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:59 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 99..1370 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:33 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 109..1386 | 9..1288 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:28 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ote-RA | 99..1370 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:28 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18275804..18277079 | 17..1290 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:59 Download gff for
BO09206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14163309..14164584 | 17..1290 | 99 | | Minus |
BO09206.pep Sequence
Translation from 16 to 1306
> BO09206.pep
MADVDDFDSLSNAELRAKMLAQGLPNIPVTDSSRKVLVKRLRASIGGQAS
PAASPKKTNRRETLAPAPGAPSAPAAASTPVDKLDGNKVAPATKARRTIT
AAEAKEPVRRLPEEAIRRRPDEADRLRSEEPVAARKPTTAPAAQPVQTRR
TSTSSGSERKVVEPLRKPETIVEQPASSKRADREENYLKVNSLIVLESDE
EEDEQLVQAADLVEQEHAARQKTTKLASSGTTTYEYKSKVVEPPRRQVYE
ATAAPVLPPSVPSARAQTTSSTRSYDYASNPAPGRYSSFVRTAAQGYVTA
EAPPVASYSSSYKRTYANELSDDTDSKEDQYESTFARNLARLRAERIGDR
ISPYSRRTLASGNAGSGSLGYEPRARRSLRPNDNSVSEAFNRWLNSLEQK
YHIKSKLFIVLLVLLLIGVYYIFYASFLDH
BO09206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ote-PA | 424 | CG5581-PA | 1..424 | 1..424 | 2116 | 100 | Plus |
bocksbeutel-PB | 399 | CG9424-PB | 1..394 | 1..422 | 189 | 23.9 | Plus |
bocksbeutel-PA | 351 | CG9424-PA | 1..249 | 1..283 | 173 | 25.1 | Plus |