Clone Sequence Records
BO09207.3prime Sequence
944 bp (850 high quality bases) assembled on 2006-01-18
> BO09207.3prime
ATGGTCTAGAAAGCTTGCTGCCCAGATGTTGGAGAGATCCCAGATCTTGA
TGAGCCTGTCCTGGCCCACTGTCAACAGGCGCTTTCTGTCCTCGTCCAGG
TCCATGTAGACGATCGAATGCTTGGCGTCATTGAATGAAGCCAGCGAGGG
GCGCTCGACTGTCTGAAGTTGTTTGTAGCACGGATCACAGGTACGCACAT
CAAACTCGAAGCCCATTATGGGTATGTTAATGCGATTGGTGGAACAGTTG
TCGCACACGGCTTTGCCGCAGTGGCGACAATGATGCTGTCGTATTCCCAG
CTGCTTTTGATCCATCATTGAGCGGAAGTTCCAGAAGAAGGGCCTGGAGC
AAAGCTGACAGTTGTTGGTATCCACCCAGCCAGGAACCTCTTTCCGCATT
GCATTCATTTCCCAAAAAACCACTACTGAATCTTCGCCACAGCTTATCAG
TTGTTGCGTGTGATTCGCGTACGACAGGGCGGAAACTTTGTTGCTATGTC
CCTGCAGCTCGTAAATGGTGCCACGTTTGCCACCAACATCCCAAACTAGC
ACGGACTGATCGCAAGCTCCGCTAAACAAGAGCTGAGGGCCTTCCACCCA
TTTGAGGCACCGGATTTCCGCCGAATGTCCATTGAAAGTGGTAATTAGTT
GCACTCCCTGAACATCGCACCTTAGCATTGTTATCTGTCCAGCATGATCG
CCCACAAAGGCATACTTGGCCAAAGCGTCGAACTGGAGAGCCGTGCATGG
TGTCTCAAAGTTGTATCCGCCCACCCGTTTGCCGCTCTCCGTGCAATGAT
AGGCGAACTGCTTATCTTTGCCGGCGGAGAGTATCCACTTGTGGGTTTTC
GAGAAGACCACGGCCATGACCCGCGCTTGATGGGACAAGTAATCCCGCAG
GAAGGACAAGCGATTGCAGTCTTCGGATAGCGCGTACTGGGTGA
BO09207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PA | 1227 | CG5168-RA | 299..1224 | 944..19 | 4605 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 446..1371 | 944..19 | 4615 | 99.9 | Minus |
CG5168-RA | 1623 | CG5168-RA | 485..1410 | 944..19 | 4615 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:26:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10424991..10425269 | 297..19 | 1395 | 100 | Minus |
2L | 23513712 | 2L | 10423888..10424100 | 944..732 | 1050 | 99.5 | Minus |
2L | 23513712 | 2L | 10424731..10424931 | 496..296 | 1005 | 100 | Minus |
2L | 23513712 | 2L | 10424543..10424670 | 621..494 | 640 | 100 | Minus |
2L | 23513712 | 2L | 10424371..10424483 | 733..621 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:26:17 has no hits.
BO09207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:43 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 300..1227 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:15 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 300..1227 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:27:42 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 486..1413 | 15..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:37:47 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 486..1413 | 15..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:37:47 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10424544..10424670 | 494..620 | 100 | -> | Minus |
2L | 10423889..10424098 | 734..943 | 99 | -> | Minus |
2L | 10424371..10424483 | 621..733 | 100 | -> | Minus |
2L | 10424734..10424930 | 297..493 | 100 | -> | Minus |
2L | 10424992..10425272 | 15..296 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:27:42 Download gff for
BO09207.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10423889..10424098 | 734..943 | 99 | -> | Minus |
arm_2L | 10424371..10424483 | 621..733 | 100 | -> | Minus |
arm_2L | 10424544..10424670 | 494..620 | 100 | -> | Minus |
arm_2L | 10424734..10424930 | 297..493 | 100 | -> | Minus |
arm_2L | 10424992..10425272 | 15..296 | 99 | | Minus |
BO09207.5prime Sequence
864 bp (824 high quality bases) assembled on 2006-01-17
> BO09207.5prime
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGGA
ATGAATGCAATGCG
BO09207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PA | 1227 | CG5168-RA | 1..848 | 17..864 | 4215 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 148..995 | 17..864 | 4225 | 99.9 | Plus |
CG5168-RA | 1623 | CG5168-RA | 187..1034 | 17..864 | 4225 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10423751..10424100 | 178..527 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 10423520..10423680 | 17..177 | 805 | 100 | Plus |
2L | 23513712 | 2L | 10424543..10424670 | 638..765 | 640 | 100 | Plus |
2L | 23513712 | 2L | 10424371..10424483 | 526..638 | 565 | 100 | Plus |
2L | 23513712 | 2L | 10424731..10424832 | 763..864 | 495 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:41:29 has no hits.
BO09207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:44 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:16 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:26:52 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1034 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:00 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1034 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:00 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
2L | 10424734..10424832 | 766..864 | 98 | | Plus |
2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:26:52 Download gff for
BO09207.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
arm_2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
arm_2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
arm_2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
arm_2L | 10424734..10424832 | 766..864 | 98 | | Plus |
BO09207.complete Sequence
1258 bp (1258 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631429
> BO09207.complete
GAAGTTATCAGTCGACATGGCTGCCGAGATAAAACCAGCTCAGCGGACCA
ACAATGATCGCTTTAACACCTCCAAAAAGCCGGAATTGCTGAGTAAGCTG
GAGGGCAGCAGCGACGATGTGAACGCAGCGATCCTAATTCCGGGCGAAAA
CGGCGTAATTAGCGTTTCCGATGACAAAACCGTTCGCGTTTGGCTAAAAC
GCGATTCTGGTCAATATTGGCCTAGCATTTGCCAGTATATGCCTTCCGGC
TGCACGGCCATCGAGTACGTTTCGGAATCCCGGCACCTGTACGTCGGCCA
GGAAAACGGAACGGTCACCCAGTACGCGCTATCCGAAGACTGCAATCGCC
TGTCCTTCCTGCGGGATTACTTGTCCCATCAAGCGCGGGTCATGGCCGTG
GTCTTCTCGAAAACCCACAAGTGGATACTCTCCGCCGGCAAAGATAAGCA
GTTCGCCTATCATTGCACGGAGAGCGGCAAACGGGTGGGCGGATACAACT
TTGAGACACCATGCACGGCTCTCCAGTTCGACGCTTTGGCCAAGTATGCC
TTTGTGGGCGATCATGCTGGACAGATAACAATGCTAAGGTGCGATGTTCA
GGGAGTGCAACTAATTACCACTTTCAATGGACATTCGGCGGAAATCCGGT
GCCTCAAATGGGTGGAAGGCCCTCAGCTCTTGTTTAGCGGAGCTTGCGAT
CAGTCCGTGCTAGTTTGGGATGTTGGTGGCAAACGTGGCACCATTTACGA
GCTGCAGGGACATAGCAACAAAGTTTCCGCCCTGTCGTACGCGAATCACA
CGCAACAACTGATAAGCTGTGGCGAAGATTCAGTAGTGGTTTTTTGGGAA
ATGAATGCAATGCGGAAAGAGGTTCCTGGCTGGGTGGATACCAACAACTG
TCAGCTTTGCTCCAGGCCCTTCTTCTGGAACTTCCGCTCAATGATGGATC
AAAAGCAGCTGGGAATACGACAGCATCATTGTCGCCACTGCGGCAAAGCC
GTGTGCGACAACTGTTCCACCAATCGCATTAACATACCCATAATGGGCTT
CGAGTTTGATGTGCGTACCTGTGATCCGTGCTACAAACAACTTCAGACAG
TCGAGCGCCCCTCGCTGGCTTCATTCAATGACGCCAAGCATTCGATCGTC
TACATGGACCTGGACGAGGACAGAAAGCGCCTGTTGACAGTGGGCCAGGA
CAGGCTCATCAAGATCTGGGATCTCTCCAACATCTGGGCAGCAAGCTTTC
TAGACCAT
BO09207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1227 | CG5168-PB | 1..1224 | 17..1240 | 6120 | 100 | Plus |
CG5168-RA | 1227 | CG5168-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-RB | 1584 | CG5168-RB | 148..1371 | 17..1240 | 6120 | 100 | Plus |
CG5168-RA | 1623 | CG5168-RA | 187..1410 | 17..1240 | 6120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10423751..10424100 | 178..527 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 10424991..10425269 | 962..1240 | 1395 | 100 | Plus |
2L | 23513712 | 2L | 10424731..10424931 | 763..963 | 1005 | 100 | Plus |
2L | 23513712 | 2L | 10423520..10423680 | 17..177 | 805 | 100 | Plus |
2L | 23513712 | 2L | 10424543..10424670 | 638..765 | 640 | 100 | Plus |
2L | 23513712 | 2L | 10424371..10424483 | 526..638 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:15:20 has no hits.
BO09207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:34 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 1..1227 | 17..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:36 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 206..1432 | 17..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:58 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1410 | 17..1242 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:34 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 206..1432 | 17..1244 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:58 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5168-RA | 187..1410 | 17..1242 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:58 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
2L | 10424734..10424930 | 766..962 | 100 | -> | Plus |
2L | 10424992..10425269 | 963..1242 | 99 | | Plus |
2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:58 Download gff for
BO09207.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10424544..10424670 | 639..765 | 100 | -> | Plus |
arm_2L | 10424734..10424930 | 766..962 | 100 | -> | Plus |
arm_2L | 10423520..10423680 | 17..177 | 100 | -> | Plus |
arm_2L | 10423751..10424098 | 178..525 | 100 | -> | Plus |
arm_2L | 10424371..10424483 | 526..638 | 100 | -> | Plus |
arm_2L | 10424992..10425269 | 963..1242 | 99 | | Plus |
BO09207.pep Sequence
Translation from 16 to 1258
> BO09207.pep
MAAEIKPAQRTNNDRFNTSKKPELLSKLEGSSDDVNAAILIPGENGVISV
SDDKTVRVWLKRDSGQYWPSICQYMPSGCTAIEYVSESRHLYVGQENGTV
TQYALSEDCNRLSFLRDYLSHQARVMAVVFSKTHKWILSAGKDKQFAYHC
TESGKRVGGYNFETPCTALQFDALAKYAFVGDHAGQITMLRCDVQGVQLI
TTFNGHSAEIRCLKWVEGPQLLFSGACDQSVLVWDVGGKRGTIYELQGHS
NKVSALSYANHTQQLISCGEDSVVVFWEMNAMRKEVPGWVDTNNCQLCSR
PFFWNFRSMMDQKQLGIRQHHCRHCGKAVCDNCSTNRINIPIMGFEFDVR
TCDPCYKQLQTVERPSLASFNDAKHSIVYMDLDEDRKRLLTVGQDRLIKI
WDLSNIWAASFLDH
BO09207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5168-PB | 408 | CG5168-PB | 1..408 | 1..408 | 2205 | 100 | Plus |
CG5168-PA | 408 | CG5168-PA | 1..408 | 1..408 | 2205 | 100 | Plus |