Clone BO09214 Report

Search the DGRC for BO09214

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG42678-RD
Protein status:BO09214.pep: validated full length
Sequenced Size:1339

Clone Sequence Records

BO09214.3prime Sequence

923 bp (829 high quality bases) assembled on 2006-01-18

> BO09214.3prime
ATGGTCTAGAAAGCTTGCGTAGTTTTCCACATCCACATCGGGCGTGGGTT
CGCGCAGCTTGCGGCGGGAGCGGATCACATTGCTGGAGCTGCTGGAGCTC
CTGGCGCCCTCAATATCGTTGTGTTTCTGGCCGCGTTTGCCTGCAGCCTT
GGCAGTGCTAGCAGCCCGACGTGGTTGTGCCTTCCGGACGGGCATGTCCC
GGAGACGGGCTGCTCCGGCATCGCCCAGGGGATCATCATCGAACTCCGCC
TCCTCGCTAACCTCTCGAATAACCAGTCGCTTGGTCTCGGTCCTCGGCTC
GTAGATCGTCTCTGTGTAGCTCTCGATGCTGCTCAAGGAACTGGCTCGCG
GCAGCCAGTTTTCCGTGCTGTCCATCGTATCCTGGCCCCTGTACAGCTCA
TCGGCCGAATGGGAGTTTTGCAGGCCGCGTCCATGGCCAGATGGCGCCGT
AGTCAGCGCGTAGGTCTTGATGGCCGTCTGCATGAGGACATTGGTGGCAT
AGTTTACTCCCTTGGAGCCCAGCTGCAGGACCGCCGAATAGCCGCGCTCT
TTGGCCTGATTCACGTACTCGTCGATCTCCTGTTCGTGGCGCGTCAACAT
AGGATGCACGAATTTGCGATACAAAGTCGAACTGCCCTTTGTGGCCGGCG
AGAGGAGCCAGAACACCAGGGCCACCTTCACCTCGTAGTAGAACGGTAGC
CAGGAGATAAATATGTCCGTGAATGTTTCTATGCAGGTGAAAAATGCAAA
GACAATCCAGTACATCATCCATTTAACATATTCCTTGACATCCTTGGTCC
TGACGGCCTTGTATGAGGCATATGCCGGGTACAGGGTGCCGCAGAACAAT
CTGAAAGCGGGAAACAGTAAACTCTGGGCACAAGTGCGAGGCGCAAGGAA
TATGACAATCAGTGAGCAGATGC

BO09214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PD 1308 CG30193-RD 401..1305 923..19 4525 100 Minus
CG30193-PF 867 CG30193-RF 33..864 850..19 4160 100 Minus
CG30193-PA 867 CG30193-RA 33..864 850..19 4160 100 Minus
CG30193-PB 867 CG30193-RB 33..864 850..19 4160 100 Minus
CG30193-PC 867 CG30193-RC 33..864 850..19 4160 100 Minus
CG30193-PE 867 CG30193-RE 33..864 850..19 4160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 474..1378 923..19 4525 100 Minus
CG42678-RG 2534 CG42678-RG 507..1338 850..19 4160 100 Minus
CG42678-RE 1469 CG42678-RE 443..1274 850..19 4160 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22929086..22929534 467..19 2245 100 Minus
2R 25286936 2R 22927250..22927448 777..579 995 100 Minus
2R 25286936 2R 22927026..22927173 923..776 740 100 Minus
2R 25286936 2R 22927513..22927629 582..466 585 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:14:30 has no hits.

BO09214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:49 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 401..1308 16..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:24 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 401..1308 16..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:33:14 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 474..1390 7..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:59 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 474..1390 7..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:59 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22927026..22927171 778..923 100 -> Minus
2R 22927250..22927447 580..777 100 -> Minus
2R 22927516..22927629 466..579 100 -> Minus
2R 22929088..22929546 7..465 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:33:14 Download gff for BO09214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18814549..18814694 778..923 100 -> Minus
arm_2R 18814773..18814970 580..777 100 -> Minus
arm_2R 18815039..18815152 466..579 100 -> Minus
arm_2R 18816611..18817069 7..465 98   Minus

BO09214.5prime Sequence

974 bp (781 high quality bases) assembled on 2006-01-18

> BO09214.5prime
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCANGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGGCATCAAGACCTACGCGCTGACTACGGCGCCATC
TGGGCATGGACGCGGCCTGCAAAACTCCCATTCGGNCGATGAGCTGTACA
GGGGGCAGATACGATGGACAGCAC

BO09214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG30193-PD 1308 CG30193-RD 1..938 17..954 4602 99.5 Plus
CG30193-PF 867 CG30193-RF 33..497 490..954 2237 99.1 Plus
CG30193-PA 867 CG30193-RA 33..497 490..954 2237 99.1 Plus
CG30193-PB 867 CG30193-RB 33..497 490..954 2237 99.1 Plus
CG30193-PC 867 CG30193-RC 33..497 490..954 2237 99.1 Plus
CG30193-PE 867 CG30193-RE 33..497 490..954 2237 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 73..1032 16..974 4708 99.4 Plus
CG42678-RO 1321 CG42678-RO 73..931 16..874 4269 99.8 Plus
CG42678-RR 1863 CG42678-RR 73..931 16..874 4269 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22926625..22927173 16..564 2745 100 Plus
2R 25286936 2R 22927250..22927448 563..761 995 100 Plus
2R 25286936 2R 22927513..22927629 758..874 559 98.3 Plus
2R 25286936 2R 22929086..22929188 873..974 424 96.1 Plus
Blast to na_te.dros performed 2015-02-12 20:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2369 175..226 125 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6823 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..6889 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6927 179..231 112 67.9 Plus

BO09214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:50 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 1..959 17..974 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:25 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30193-PD 1..959 17..974 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:41 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 68..1032 11..974 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:34:58 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 68..1032 11..974 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:34:58 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22926620..22927171 11..562 99 -> Plus
2R 22927250..22927447 563..760 100 -> Plus
2R 22927516..22927629 761..874 98 -> Plus
2R 22929088..22929188 875..974 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:41 Download gff for BO09214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18814143..18814694 11..562 99 -> Plus
arm_2R 18814773..18814970 563..760 100 -> Plus
arm_2R 18815039..18815152 761..874 98 -> Plus
arm_2R 18816611..18816711 875..974 96   Plus

BO09214.complete Sequence

1339 bp (1339 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631430

> BO09214.complete
GAAGTTATCAGTCGACATGAGGCCAATCTATCAGCAGGAGCCGCCGCTCT
TCTACCAGCGGCCAGCTAATCTCCGCCGCCTACGTCATCCGCCGGGCACC
GTCTACGGACGCAGTTACTCGCTCGAGGACCAGCCAGAGGACGTGATACC
CGTGTATCCAAAGTTTATCTACGCCCCACAACAGCAGCAACAGCAACAAC
GGGCCCCATATCCGCTGTATCAACTGGGCGACTCGCTGAGCTCGCTGGAC
AGCGATTTTCCCGAGAATGAGTACGCGGGTGCCTACATAGTGGAGGATCG
AGTTCCGCTGGCCAACGCACCTACTCCCAAAGTTGTCCAGAACCTCAATG
CGTTGGGTCGAATGCTGGAGCTGCTGCAGCGCTGTCCTCTGCCATGCCTC
TCCTTCAACACGGCCTGCATCTGCTCACTGATTGTCATATTCCTTGCGCC
TCGCACTTGTGCCCAGAGTTTACTGTTTCCCGCTTTCAGATTGTTCTGCG
GCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGAT
GTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTTT
CACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTCT
ACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCACA
AAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGCG
CCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGCT
ATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAAT
GTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCATC
TGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATGAGCTGTACA
GGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAGT
TCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGAGCCGAGGAC
CGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGGCGGAGTTCG
ATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGGGACATGCCC
GTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAAGGCTGCAGG
CAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGAGCTCCAGCA
GCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAACCCACGCCC
GATGTGGATGTGGAAAACTACGCAAGCTTTCTAGACCAT

BO09214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1308 CG42678-PD 1..1305 17..1321 6525 100 Plus
CG42678-RO 876 CG42678-PO 1..858 17..874 4290 100 Plus
CG42678-RR 1380 CG42678-PR 1..858 17..874 4290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-RD 1573 CG42678-RD 73..1378 16..1321 6530 100 Plus
CG42678-RO 1321 CG42678-RO 73..931 16..874 4295 100 Plus
CG42678-RR 1863 CG42678-RR 73..931 16..874 4295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22926625..22927173 16..564 2745 100 Plus
2R 25286936 2R 22929086..22929534 873..1321 2245 100 Plus
2R 25286936 2R 22927250..22927448 563..761 995 100 Plus
2R 25286936 2R 22927513..22927629 758..874 585 100 Plus
Blast to na_te.dros performed 2014-11-27 13:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2369 175..226 125 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..6823 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..6889 176..226 120 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6875..6927 179..231 112 67.9 Plus

BO09214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:24 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 1..1308 17..1324 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:23 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 845..2167 11..1333 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:50:18 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 74..1378 17..1323 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:24 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
CG30193-RD 845..2167 11..1333 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:35 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
CG42678-RD 74..1378 17..1323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:17:35 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22926626..22927171 17..562 100 -> Plus
2R 22927250..22927447 563..760 100 -> Plus
2R 22927516..22927629 761..874 100 -> Plus
2R 22929088..22929534 875..1323 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:50:18 Download gff for BO09214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18814149..18814694 17..562 100 -> Plus
arm_2R 18814773..18814970 563..760 100 -> Plus
arm_2R 18815039..18815152 761..874 100 -> Plus
arm_2R 18816611..18817057 875..1323 99   Plus

BO09214.pep Sequence

Translation from 16 to 1339

> BO09214.pep
MRPIYQQEPPLFYQRPANLRRLRHPPGTVYGRSYSLEDQPEDVIPVYPKF
IYAPQQQQQQQRAPYPLYQLGDSLSSLDSDFPENEYAGAYIVEDRVPLAN
APTPKVVQNLNALGRMLELLQRCPLPCLSFNTACICSLIVIFLAPRTCAQ
SLLFPAFRLFCGTLYPAYASYKAVRTKDVKEYVKWMMYWIVFAFFTCIET
FTDIFISWLPFYYEVKVALVFWLLSPATKGSSTLYRKFVHPMLTRHEQEI
DEYVNQAKERGYSAVLQLGSKGVNYATNVLMQTAIKTYALTTAPSGHGRG
LQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTETKRL
VIREVSEEAEFDDDPLGDAGAARLRDMPVRKAQPRRAASTAKAAGKRGQK
HNDIEGARSSSSSSNVIRSRRKLREPTPDVDVENYASFLDH

BO09214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42678-PD 435 CG30193-PD 1..435 1..435 2282 100 Plus
CG42678-PR 459 CG42678-PR 1..317 1..318 1526 91.8 Plus
CG42678-PQ 685 CG42678-PQ 1..317 1..318 1526 91.8 Plus
CG42678-PI 716 CG42678-PI 1..317 1..318 1526 91.8 Plus
CG42678-PO 291 CG42678-PO 1..286 1..286 1523 100 Plus