Clone Sequence Records
BO09217.3prime Sequence
973 bp (793 high quality bases) assembled on 2006-01-18
> BO09217.3prime
ATGGTCTAGAAAGCTTGCCGATGGCTGCTCCTTTATCTCAGTCTCGCAGT
TGGCTGTGGCCAGCGGTTTCAGTTGCTGTTTTTCTTCCGTTTCATTTCGT
TCCGGCTGTTGCTCCCCCTCCTCCTCGCTGTCCTCGCGCACAATAAGATC
GTGTGGCTCCCTGGAGGCCTTGCGTTTGCCCCGCTGCTCCTCAAATAGAT
CCGGCTTGCGGCAGACCCAGAAAAGACTCTGGTACTCGCTCTGTTTCATT
GAAGACGGGTTCTGTGCGTACTTGGTACGGATGCCGGTGCGTGATTTCTC
GATAACGAATCCTACGCTTTCCATGATAATGCAAAGGTCCTCGAAAGCCG
GCTCGATGCTGTTTTGCCCGCTGACGTCGCTAAAATGGTACAGCAGCGGC
CCGAGATTCACCCAAATGCCACCAGGCACGAGGATTTTGTAAATTGTGCG
TATGAAGTCAATAACATTATTGGCACAATCGATGAAGAAGCACGTAGCCA
CGCAGTTGTAGGCGTTCGGCGTCTTGTAGACCTCCAGAAAGTCGCCAGCT
GCTATTTCAAAATGGCCCTTGGGTGGATTTTTAAGCGGGCAGACGTCTGG
GAAACGAACGGGGGCCACCTGATCCTCACGCCTTAAGTTATTCACATACT
GGTGCACCCACGGATATAACACGTACTTGTTCTCGTTGTCGCAGAGGTTG
AGGACAAAATTGGAGGCGATCAGCATGAAGTAGGAAAACTCGTTGCCCTC
GCACGAGTACCCCAAGCAGGCAAGCTCGTAGGTGAGCCGTCCCAACCCCG
CTCCCGGCACTAGGATCTTTATATCCTTCAGCTCGAAATCGCTGTGCTTG
AAGTACGCAACGATGCTGTCGATGATCGGTTTATACGATTTGCTCCGTTC
TAAGGCTCCTTCAGTGCTCCAGTCGCGCGCAATCAACTTCAACGTCGACT
GGGCCTGGTCCATGTCACCGTGC
BO09217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PA | 1320 | CG11596-RA | 446..1317 | 890..19 | 4360 | 100 | Minus |
CG11596-PB | 1206 | CG11596-RB | 332..1203 | 890..19 | 4360 | 100 | Minus |
CG11596-PC | 1371 | CG11596-RC | 497..1368 | 890..19 | 4360 | 100 | Minus |
CG11596-PA | 1320 | CG11596-RA | 363..441 | 973..895 | 395 | 100 | Minus |
CG11596-PB | 1206 | CG11596-RB | 266..327 | 956..895 | 310 | 100 | Minus |
CG11596-PC | 1371 | CG11596-RC | 431..492 | 956..895 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1747 | CG11596-RA | 466..1420 | 973..19 | 4730 | 99.8 | Minus |
CG11596-RE | 1765 | CG11596-RE | 508..1445 | 956..19 | 4645 | 99.8 | Minus |
CG11596-RD | 1544 | CG11596-RD | 287..1224 | 956..19 | 4645 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1929773..1930190 | 436..19 | 2090 | 100 | Minus |
X | 23542271 | X | 1929454..1929711 | 694..437 | 1290 | 100 | Minus |
X | 23542271 | X | 1929244..1929384 | 835..695 | 705 | 100 | Minus |
X | 23542271 | X | 1929050..1929170 | 956..836 | 545 | 96.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:31:01 has no hits.
BO09217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:53 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PC | 363..381 | 955..973 | 100 | | Minus |
CG11596-PC | 433..1371 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:29 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PC | 363..381 | 955..973 | 100 | -> | Minus |
CG11596-PC | 433..1371 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:02 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 466..1427 | 13..973 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:34 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 466..1427 | 13..973 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:34 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1928562..1928580 | 955..973 | 100 | -> | Minus |
X | 1929052..1929170 | 836..954 | 98 | -> | Minus |
X | 1929244..1929384 | 695..835 | 100 | -> | Minus |
X | 1929454..1929711 | 437..694 | 100 | -> | Minus |
X | 1929773..1930197 | 13..436 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:02 Download gff for
BO09217.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1822595..1822613 | 955..973 | 100 | -> | Minus |
arm_X | 1823085..1823203 | 836..954 | 98 | -> | Minus |
arm_X | 1823277..1823417 | 695..835 | 100 | -> | Minus |
arm_X | 1823487..1823744 | 437..694 | 100 | -> | Minus |
arm_X | 1823806..1824230 | 13..436 | 99 | | Minus |
BO09217.5prime Sequence
998 bp (783 high quality bases) assembled on 2006-01-18
> BO09217.5prime
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGGCTGGTGGCATTTTGGGTGAATCTC
GGGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGGCAAAACAGCAT
BO09217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PA | 1320 | CG11596-RA | 1..922 | 17..938 | 4585 | 99.8 | Plus |
CG11596-PC | 1371 | CG11596-RC | 431..973 | 396..938 | 2690 | 99.8 | Plus |
CG11596-PB | 1206 | CG11596-RB | 266..808 | 396..938 | 2690 | 99.8 | Plus |
CG11596-PC | 1371 | CG11596-RC | 1..381 | 17..397 | 1905 | 100 | Plus |
CG11596-PB | 1206 | CG11596-RB | 1..216 | 182..397 | 1080 | 100 | Plus |
CG11596-PC | 1371 | CG11596-RC | 971..1020 | 937..986 | 250 | 100 | Plus |
CG11596-PA | 1320 | CG11596-RA | 920..969 | 937..986 | 250 | 100 | Plus |
CG11596-PB | 1206 | CG11596-RB | 806..855 | 937..986 | 250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1747 | CG11596-RA | 104..1083 | 17..998 | 4845 | 99.7 | Plus |
CG11596-RE | 1765 | CG11596-RE | 508..1108 | 396..998 | 2950 | 99.5 | Plus |
CG11596-RD | 1544 | CG11596-RD | 287..887 | 396..998 | 2950 | 99.5 | Plus |
CG11596-RE | 1765 | CG11596-RE | 104..458 | 17..397 | 1495 | 93.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1929454..1929711 | 658..915 | 1290 | 100 | Plus |
X | 23542271 | X | 1928333..1928581 | 150..398 | 1245 | 100 | Plus |
X | 23542271 | X | 1929244..1929384 | 517..657 | 705 | 100 | Plus |
X | 23542271 | X | 1927786..1927920 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 1929050..1929170 | 396..516 | 605 | 100 | Plus |
X | 23542271 | X | 1929773..1929853 | 916..998 | 300 | 96.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:35:09 has no hits.
BO09217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:53 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 1..980 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:31 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-PA | 1..980 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:28 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1083 | 17..998 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:54 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1083 | 17..998 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:54 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1929052..1929170 | 398..516 | 100 | -> | Plus |
X | 1929244..1929384 | 517..657 | 100 | -> | Plus |
X | 1929454..1929711 | 658..915 | 100 | -> | Plus |
X | 1929773..1929853 | 916..998 | 96 | | Plus |
X | 1927786..1927919 | 17..150 | 100 | -> | Plus |
X | 1928334..1928580 | 151..397 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:28 Download gff for
BO09217.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821819..1821952 | 17..150 | 100 | -> | Plus |
arm_X | 1822367..1822613 | 151..397 | 100 | -> | Plus |
arm_X | 1823085..1823203 | 398..516 | 100 | -> | Plus |
arm_X | 1823277..1823417 | 517..657 | 100 | -> | Plus |
arm_X | 1823487..1823744 | 658..915 | 100 | -> | Plus |
arm_X | 1823806..1823886 | 916..998 | 96 | | Plus |
BO09217.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631431
> BO09217.complete
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGAATCTCG
GGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGCAAAACAGCATCGAG
CCGGCTTTCGAGGACCTTTGCATTATCATGGAAAGCGTAGGATTCGTTAT
CGAGAAATCACGCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCTT
CAATGAAACAGAGCGAGTACCAGAGTCTTTTCTGGGTCTGCCGCAAGCCG
GATCTATTTGAGGAGCAGCGGGGCAAACGCAAGGCCTCCAGGGAGCCACA
CGATCTTATTGTGCGCGAGGACAGCGAGGAGGAGGGGGAGCAACAGCCGG
AACGAAATGAAACGGAAGAAAAACAGCAACTGAAACCGCTGGCCACAGCC
AACTGCGAGACTGAGATAAAGGAGCAGCCATCGGCAAGCTTTCTAGACCA
T
BO09217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1320 | CG11596-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
CG11596-RE | 1206 | CG11596-PE | 266..1203 | 396..1333 | 4690 | 100 | Plus |
CG11596-RD | 1206 | CG11596-PD | 266..1203 | 396..1333 | 4690 | 100 | Plus |
CG11596-RE | 1206 | CG11596-PE | 1..216 | 182..397 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-RA | 1747 | CG11596-RA | 104..1420 | 17..1333 | 6585 | 100 | Plus |
CG11596-RE | 1765 | CG11596-RE | 508..1445 | 396..1333 | 4690 | 100 | Plus |
CG11596-RD | 1544 | CG11596-RD | 287..1224 | 396..1333 | 4690 | 100 | Plus |
CG11596-RE | 1765 | CG11596-RE | 211..458 | 150..397 | 1240 | 100 | Plus |
CG11596-RE | 1765 | CG11596-RE | 104..212 | 17..125 | 545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1929773..1930190 | 916..1333 | 2090 | 100 | Plus |
X | 23542271 | X | 1929454..1929711 | 658..915 | 1290 | 100 | Plus |
X | 23542271 | X | 1928333..1928581 | 150..398 | 1245 | 100 | Plus |
X | 23542271 | X | 1929244..1929384 | 517..657 | 705 | 100 | Plus |
X | 23542271 | X | 1927786..1927920 | 17..151 | 675 | 100 | Plus |
X | 23542271 | X | 1929050..1929170 | 396..516 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:54 has no hits.
BO09217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:25 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 1..1320 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:26 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 88..1411 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:59 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1420 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:26 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 88..1411 | 17..1339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:32 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11596-RA | 104..1420 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:32 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1927786..1927919 | 17..150 | 100 | -> | Plus |
X | 1928334..1928580 | 151..397 | 100 | -> | Plus |
X | 1929052..1929170 | 398..516 | 100 | -> | Plus |
X | 1929244..1929384 | 517..657 | 100 | -> | Plus |
X | 1929454..1929711 | 658..915 | 100 | -> | Plus |
X | 1929773..1930190 | 916..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:59 Download gff for
BO09217.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1821819..1821952 | 17..150 | 100 | -> | Plus |
arm_X | 1822367..1822613 | 151..397 | 100 | -> | Plus |
arm_X | 1823085..1823203 | 398..516 | 100 | -> | Plus |
arm_X | 1823277..1823417 | 517..657 | 100 | -> | Plus |
arm_X | 1823487..1823744 | 658..915 | 100 | -> | Plus |
arm_X | 1823806..1824223 | 916..1335 | 99 | | Plus |
BO09217.pep Sequence
Translation from 16 to 1351
> BO09217.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPSASFLDH
BO09217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11596-PA | 439 | CG11596-PA | 1..439 | 1..439 | 2345 | 100 | Plus |
CG11596-PC | 456 | CG11596-PC | 1..456 | 1..439 | 2317 | 96.3 | Plus |
CG11596-PE | 401 | CG11596-PE | 1..401 | 56..439 | 2022 | 95.8 | Plus |
CG11596-PD | 401 | CG11596-PD | 1..401 | 56..439 | 2022 | 95.8 | Plus |
CG11596-PB | 401 | CG11596-PB | 1..401 | 56..439 | 2022 | 95.8 | Plus |