Clone BO09217 Report

Search the DGRC for BO09217

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG11596-RA
Protein status:BO09217.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO09217.3prime Sequence

973 bp (793 high quality bases) assembled on 2006-01-18

> BO09217.3prime
ATGGTCTAGAAAGCTTGCCGATGGCTGCTCCTTTATCTCAGTCTCGCAGT
TGGCTGTGGCCAGCGGTTTCAGTTGCTGTTTTTCTTCCGTTTCATTTCGT
TCCGGCTGTTGCTCCCCCTCCTCCTCGCTGTCCTCGCGCACAATAAGATC
GTGTGGCTCCCTGGAGGCCTTGCGTTTGCCCCGCTGCTCCTCAAATAGAT
CCGGCTTGCGGCAGACCCAGAAAAGACTCTGGTACTCGCTCTGTTTCATT
GAAGACGGGTTCTGTGCGTACTTGGTACGGATGCCGGTGCGTGATTTCTC
GATAACGAATCCTACGCTTTCCATGATAATGCAAAGGTCCTCGAAAGCCG
GCTCGATGCTGTTTTGCCCGCTGACGTCGCTAAAATGGTACAGCAGCGGC
CCGAGATTCACCCAAATGCCACCAGGCACGAGGATTTTGTAAATTGTGCG
TATGAAGTCAATAACATTATTGGCACAATCGATGAAGAAGCACGTAGCCA
CGCAGTTGTAGGCGTTCGGCGTCTTGTAGACCTCCAGAAAGTCGCCAGCT
GCTATTTCAAAATGGCCCTTGGGTGGATTTTTAAGCGGGCAGACGTCTGG
GAAACGAACGGGGGCCACCTGATCCTCACGCCTTAAGTTATTCACATACT
GGTGCACCCACGGATATAACACGTACTTGTTCTCGTTGTCGCAGAGGTTG
AGGACAAAATTGGAGGCGATCAGCATGAAGTAGGAAAACTCGTTGCCCTC
GCACGAGTACCCCAAGCAGGCAAGCTCGTAGGTGAGCCGTCCCAACCCCG
CTCCCGGCACTAGGATCTTTATATCCTTCAGCTCGAAATCGCTGTGCTTG
AAGTACGCAACGATGCTGTCGATGATCGGTTTATACGATTTGCTCCGTTC
TAAGGCTCCTTCAGTGCTCCAGTCGCGCGCAATCAACTTCAACGTCGACT
GGGCCTGGTCCATGTCACCGTGC

BO09217.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 1320 CG11596-RA 446..1317 890..19 4360 100 Minus
CG11596-PB 1206 CG11596-RB 332..1203 890..19 4360 100 Minus
CG11596-PC 1371 CG11596-RC 497..1368 890..19 4360 100 Minus
CG11596-PA 1320 CG11596-RA 363..441 973..895 395 100 Minus
CG11596-PB 1206 CG11596-RB 266..327 956..895 310 100 Minus
CG11596-PC 1371 CG11596-RC 431..492 956..895 310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 466..1420 973..19 4730 99.8 Minus
CG11596-RE 1765 CG11596-RE 508..1445 956..19 4645 99.8 Minus
CG11596-RD 1544 CG11596-RD 287..1224 956..19 4645 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929773..1930190 436..19 2090 100 Minus
X 23542271 X 1929454..1929711 694..437 1290 100 Minus
X 23542271 X 1929244..1929384 835..695 705 100 Minus
X 23542271 X 1929050..1929170 956..836 545 96.7 Minus
Blast to na_te.dros performed on 2015-02-12 18:31:01 has no hits.

BO09217.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:53 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PC 363..381 955..973 100   Minus
CG11596-PC 433..1371 16..954 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:29 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PC 363..381 955..973 100 -> Minus
CG11596-PC 433..1371 16..954 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:07:02 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 466..1427 13..973 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:14:34 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 466..1427 13..973 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:14:34 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1928562..1928580 955..973 100 -> Minus
X 1929052..1929170 836..954 98 -> Minus
X 1929244..1929384 695..835 100 -> Minus
X 1929454..1929711 437..694 100 -> Minus
X 1929773..1930197 13..436 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:07:02 Download gff for BO09217.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1822595..1822613 955..973 100 -> Minus
arm_X 1823085..1823203 836..954 98 -> Minus
arm_X 1823277..1823417 695..835 100 -> Minus
arm_X 1823487..1823744 437..694 100 -> Minus
arm_X 1823806..1824230 13..436 99   Minus

BO09217.5prime Sequence

998 bp (783 high quality bases) assembled on 2006-01-18

> BO09217.5prime
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGGCTGGTGGCATTTTGGGTGAATCTC
GGGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGGCAAAACAGCAT

BO09217.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 1320 CG11596-RA 1..922 17..938 4585 99.8 Plus
CG11596-PC 1371 CG11596-RC 431..973 396..938 2690 99.8 Plus
CG11596-PB 1206 CG11596-RB 266..808 396..938 2690 99.8 Plus
CG11596-PC 1371 CG11596-RC 1..381 17..397 1905 100 Plus
CG11596-PB 1206 CG11596-RB 1..216 182..397 1080 100 Plus
CG11596-PC 1371 CG11596-RC 971..1020 937..986 250 100 Plus
CG11596-PA 1320 CG11596-RA 920..969 937..986 250 100 Plus
CG11596-PB 1206 CG11596-RB 806..855 937..986 250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 104..1083 17..998 4845 99.7 Plus
CG11596-RE 1765 CG11596-RE 508..1108 396..998 2950 99.5 Plus
CG11596-RD 1544 CG11596-RD 287..887 396..998 2950 99.5 Plus
CG11596-RE 1765 CG11596-RE 104..458 17..397 1495 93.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:35:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929454..1929711 658..915 1290 100 Plus
X 23542271 X 1928333..1928581 150..398 1245 100 Plus
X 23542271 X 1929244..1929384 517..657 705 100 Plus
X 23542271 X 1927786..1927920 17..151 675 100 Plus
X 23542271 X 1929050..1929170 396..516 605 100 Plus
X 23542271 X 1929773..1929853 916..998 300 96.4 Plus
Blast to na_te.dros performed on 2015-02-10 23:35:09 has no hits.

BO09217.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:53 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 1..980 17..998 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:31 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-PA 1..980 17..998 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:28 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1083 17..998 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:14:54 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1083 17..998 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:14:54 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1929052..1929170 398..516 100 -> Plus
X 1929244..1929384 517..657 100 -> Plus
X 1929454..1929711 658..915 100 -> Plus
X 1929773..1929853 916..998 96   Plus
X 1927786..1927919 17..150 100 -> Plus
X 1928334..1928580 151..397 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:28 Download gff for BO09217.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821819..1821952 17..150 100 -> Plus
arm_X 1822367..1822613 151..397 100 -> Plus
arm_X 1823085..1823203 398..516 100 -> Plus
arm_X 1823277..1823417 517..657 100 -> Plus
arm_X 1823487..1823744 658..915 100 -> Plus
arm_X 1823806..1823886 916..998 96   Plus

BO09217.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631431

> BO09217.complete
GAAGTTATCAGTCGACATGAGCTCCATGGACTGCGCCACGTTCCCAATGC
ATCCTAAAATGGACGAGCAACTGGCCCGAACCTTCGTCATCAACGAGGAG
GAGGAGGAGAAGCACATTCAGAAGGTGCAGAACGCCTTCCTTTACTATGG
GCCATATGCGTGTCAGCGGCTAAAGCGCTCCATGGATTACCTGAACAGCC
TGTCTGGCGAGGACCAAATCATGCTAGCCAAGTACCGAGGGCATCTGGAG
TGCGTGCGCACGTGCATCGATCGCAACCAGGCGGTTATCCGGGAAATATT
GCGCGGGCGTGTCCTCTATCCGACGGATGAGGCGACTGGTGATCCCTCGG
AGTTTGACGAGCCGCCGCCAAATGTGCGGCACGGTGACATGGACCAGGCC
CAGTCGACGTTGAAGTTGATTGCGCGCGACTGGAGCACTGAAGGAGCCTT
AGAACGGGAGCAATCGTATAAACCGATCATCGACAGCATCGTTGCGTACT
TCAAGCACAGCGATTTCGAGCTGAAGGATATAAAGATCCTAGTGCCGGGA
GCGGGGTTGGGACGGCTCACCTACGAGCTTGCCTGCTTGGGGTACTCGTG
CGAGGGCAACGAGTTTTCCTACTTCATGCTGATCGCCTCCAATTTTGTCC
TCAACCTCTGCGACAACGAGAACAAGTACGTGTTATATCCGTGGGTGCAC
CAGTATGTGAATAACTTAAGGCGTGAGGATCAGGTGGCCCCCGTTCGTTT
CCCAGACGTCTGCCCGCTTAAAAATCCACCCAAGGGCCATTTTGAAATAG
CAGCTGGCGACTTTCTGGAGGTCTACAAGACGCCGAACGCCTACAACTGC
GTGGCTACGTGCTTCTTCATCGATTGTGCCAATAATGTTATTGACTTCAT
ACGCACAATTTACAAAATCCTCGTGCCTGGTGGCATTTGGGTGAATCTCG
GGCCGCTGCTGTACCATTTTAGCGACGTCAGCGGGCAAAACAGCATCGAG
CCGGCTTTCGAGGACCTTTGCATTATCATGGAAAGCGTAGGATTCGTTAT
CGAGAAATCACGCACCGGCATCCGTACCAAGTACGCACAGAACCCGTCTT
CAATGAAACAGAGCGAGTACCAGAGTCTTTTCTGGGTCTGCCGCAAGCCG
GATCTATTTGAGGAGCAGCGGGGCAAACGCAAGGCCTCCAGGGAGCCACA
CGATCTTATTGTGCGCGAGGACAGCGAGGAGGAGGGGGAGCAACAGCCGG
AACGAAATGAAACGGAAGAAAAACAGCAACTGAAACCGCTGGCCACAGCC
AACTGCGAGACTGAGATAAAGGAGCAGCCATCGGCAAGCTTTCTAGACCA
T

BO09217.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1320 CG11596-PA 1..1317 17..1333 6585 100 Plus
CG11596-RE 1206 CG11596-PE 266..1203 396..1333 4690 100 Plus
CG11596-RD 1206 CG11596-PD 266..1203 396..1333 4690 100 Plus
CG11596-RE 1206 CG11596-PE 1..216 182..397 1080 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-RA 1747 CG11596-RA 104..1420 17..1333 6585 100 Plus
CG11596-RE 1765 CG11596-RE 508..1445 396..1333 4690 100 Plus
CG11596-RD 1544 CG11596-RD 287..1224 396..1333 4690 100 Plus
CG11596-RE 1765 CG11596-RE 211..458 150..397 1240 100 Plus
CG11596-RE 1765 CG11596-RE 104..212 17..125 545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1929773..1930190 916..1333 2090 100 Plus
X 23542271 X 1929454..1929711 658..915 1290 100 Plus
X 23542271 X 1928333..1928581 150..398 1245 100 Plus
X 23542271 X 1929244..1929384 517..657 705 100 Plus
X 23542271 X 1927786..1927920 17..151 675 100 Plus
X 23542271 X 1929050..1929170 396..516 605 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:35:54 has no hits.

BO09217.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:25 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 1..1320 17..1336 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:26 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 88..1411 17..1339 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:59 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1420 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:26 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 88..1411 17..1339 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:32 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
CG11596-RA 104..1420 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:32 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
X 1927786..1927919 17..150 100 -> Plus
X 1928334..1928580 151..397 100 -> Plus
X 1929052..1929170 398..516 100 -> Plus
X 1929244..1929384 517..657 100 -> Plus
X 1929454..1929711 658..915 100 -> Plus
X 1929773..1930190 916..1335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:59 Download gff for BO09217.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1821819..1821952 17..150 100 -> Plus
arm_X 1822367..1822613 151..397 100 -> Plus
arm_X 1823085..1823203 398..516 100 -> Plus
arm_X 1823277..1823417 517..657 100 -> Plus
arm_X 1823487..1823744 658..915 100 -> Plus
arm_X 1823806..1824223 916..1335 99   Plus

BO09217.pep Sequence

Translation from 16 to 1351

> BO09217.pep
MSSMDCATFPMHPKMDEQLARTFVINEEEEEKHIQKVQNAFLYYGPYACQ
RLKRSMDYLNSLSGEDQIMLAKYRGHLECVRTCIDRNQAVIREILRGRVL
YPTDEATGDPSEFDEPPPNVRHGDMDQAQSTLKLIARDWSTEGALEREQS
YKPIIDSIVAYFKHSDFELKDIKILVPGAGLGRLTYELACLGYSCEGNEF
SYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRREDQVAPVRFPDVCP
LKNPPKGHFEIAAGDFLEVYKTPNAYNCVATCFFIDCANNVIDFIRTIYK
ILVPGGIWVNLGPLLYHFSDVSGQNSIEPAFEDLCIIMESVGFVIEKSRT
GIRTKYAQNPSSMKQSEYQSLFWVCRKPDLFEEQRGKRKASREPHDLIVR
EDSEEEGEQQPERNETEEKQQLKPLATANCETEIKEQPSASFLDH

BO09217.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG11596-PA 439 CG11596-PA 1..439 1..439 2345 100 Plus
CG11596-PC 456 CG11596-PC 1..456 1..439 2317 96.3 Plus
CG11596-PE 401 CG11596-PE 1..401 56..439 2022 95.8 Plus
CG11596-PD 401 CG11596-PD 1..401 56..439 2022 95.8 Plus
CG11596-PB 401 CG11596-PB 1..401 56..439 2022 95.8 Plus