Clone BO09221 Report

Search the DGRC for BO09221

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptdock-RB
Protein status:BO09221.pep: validated full length
Sequenced Size:1678

Clone Sequence Records

BO09221.3prime Sequence

960 bp (916 high quality bases) assembled on 2006-01-18

> BO09221.3prime
ATGGTCTAGAAAGCTTGCCGTGCCATTGGCCTTCGGCAGCGATCGCACCA
GATACAGCTTTTCGCCCTGCTTATTCGTGTAGATGGGCGCTCTTTGGTAG
TGATCGACCAGTTGGTCCAGCGAGTGGAACTTCCTCTGCCCAATGCAGTA
CATGTTCTGCTCCACGTGCACGCGGAAGTGCTTGTTGCGCCCTGGGGCCT
TTAACGAAACCGAATAGTCTCCCATGTTAGTCTCACTGTCTCTGATGAGG
AAGTCGCCATCGTGCCCGTGGCCGTTGAGCACCGTGTCGCACTGGCTGCG
GGTGATGGCTCCATAATACCACGACTTGCCCGCCAGATTTGGCCGCTCGA
TTGGCTGGCCGGAAGATTGCGCCGCCGGCTTATTACCCTCATTGCGCCGC
TCCATGGAGTCGTTTCCTCCGCCACCACCTGCGCCGCCATTACTTCCTCC
TCCATTTCCGTTTCCTGCACTGGCACTCGCATTACGATAGGGCGTGGCCA
GGTAGTCGTTCAACTCTTGGAGATAATTGCGTGGAACTAAACCGACTTGG
CCCTGATTGTTGCGAGCTTTGTACCAGTCCGGATCGGAGGCGGGCCGATC
CACGATCTCCAAGCGATCGCCCTTCTCGAACGAGAGCTCCTGGTCGTTGT
TTGACGTGAAGCTGTACAGCGCGACCACAATATCAAGCACGTTCTCGGCC
ATTGCGTAGGTGTGGATCTCGCCGTCGTTATCACAATCCTCCGTTGTGTA
GTTGCTGGGGAACCAGCCGACGGAATTGCCGCTCTGTCCACGCCACCATC
CATCGTTGGACTTCTCCAGGATGAGGATTCGTGTGCCCTTGGTCAGCGAA
AGTTCATCGGGCTGCTGGGCCTGATAGTTATACTTGACCACAGCCGTTCC
GATGGCCTCTGCGGGATCTGGGGGGAAGTCGGCGCGACATGGTTGGACTC
TCGACCTGTC

BO09221.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3727-PA 1233 dock-RA 325..1230 924..19 4530 100 Minus
CG3727-PB 1647 dock-RB 739..1644 924..19 4530 100 Minus
CG3727-PC 1647 dock-RC 739..1644 924..19 4530 100 Minus
CG3727-PA 1233 dock-RA 290..329 960..921 200 100 Minus
CG3727-PB 1647 dock-RB 704..743 960..921 200 100 Minus
CG3727-PC 1647 dock-RC 704..743 960..921 200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 1474..2414 960..19 4685 99.9 Minus
dock-RC 3583 CG3727-RC 1322..2262 960..19 4685 99.9 Minus
dock-RB 3618 CG3727-RB 1357..2297 960..19 4685 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 831176..831626 676..226 2255 100 Minus
2L 23513712 2L 830800..831085 960..674 1385 99.7 Minus
2L 23513712 2L 831714..831920 225..19 1035 100 Minus
Blast to na_te.dros performed on 2015-02-08 14:01:45 has no hits.

BO09221.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:58 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-PB 704..1647 15..960 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:38 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3727-PC 704..1647 15..960 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:49 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 1357..2302 13..960 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:54 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 1357..2302 13..960 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:54 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 830800..831083 676..960 99 -> Minus
2L 831177..831626 226..675 100 -> Minus
2L 831714..831925 13..225 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:49 Download gff for BO09221.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 830800..831083 676..960 99 -> Minus
arm_2L 831177..831626 226..675 100 -> Minus
arm_2L 831714..831925 13..225 99   Minus

BO09221.5prime Sequence

930 bp (805 high quality bases) assembled on 2006-01-17

> BO09221.5prime
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGG
CAATTCCGTCGGCTGGTTCCCCAGCAACTA

BO09221.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG3727-PB 1647 dock-RB 1..914 17..930 4570 100 Plus
CG3727-PC 1647 dock-RC 1..914 17..930 4570 100 Plus
CG3727-PA 1233 dock-RA 1..500 431..930 2500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:17
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 771..1684 17..930 4570 100 Plus
dock-RC 3583 CG3727-RC 619..1532 17..930 4570 100 Plus
dock-RB 3618 CG3727-RB 654..1567 17..930 4570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 829536..829972 17..453 2185 100 Plus
2L 23513712 2L 830735..831010 655..930 1380 100 Plus
2L 23513712 2L 830144..830349 452..657 1030 100 Plus
Blast to na_te.dros performed 2015-02-12 11:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 75..298 177 55.7 Plus

BO09221.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:59 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-PB 1..913 17..929 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:40 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3727-PC 1..913 17..929 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:27:13 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 645..1566 9..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:57 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
dock-RB 645..1566 9..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:57 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 829527..829971 9..452 99 -> Plus
2L 830145..830349 453..657 100 -> Plus
2L 830738..831009 658..929 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:27:13 Download gff for BO09221.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 830145..830349 453..657 100 -> Plus
arm_2L 829527..829971 9..452 99 -> Plus
arm_2L 830738..831009 658..929 100   Plus

BO09221.complete Sequence

1678 bp (1678 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631433

> BO09221.complete
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGG
CAATTCCGTCGGCTGGTTCCCCAGCAACTACACAACGGAGGATTGTGATA
ACGACGGCGAGATCCACACCTACGCAATGGCCGAGAACGTGCTTGATATT
GTGGTCGCGCTGTACAGCTTCACGTCAAACAACGACCAGGAGCTCTCGTT
CGAGAAGGGCGATCGCTTGGAGATCGTGGATCGGCCCGCCTCCGATCCGG
ACTGGTACAAAGCTCGCAACAATCAGGGCCAAGTCGGTTTAGTTCCACGC
AATTATCTCCAAGAGTTGAACGACTACCTGGCCACGCCCTATCGTAATGC
GAGTGCCAGTGCAGGAAACGGAAATGGAGGAGGAAGTAATGGCGGCGCAG
GTGGTGGCGGAGGAAACGACTCCATGGAGCGGCGCAATGAGGGTAATAAG
CCGGCGGCGCAATCTTCCGGCCAGCCAATCGAGCGGCCAAATCTGGCGGG
CAAGTCGTGGTATTATGGAGCCATCACCCGCAGCCAGTGCGACACGGTGC
TCAACGGCCACGGGCACGATGGCGACTTCCTCATCAGAGACAGTGAGACT
AACATGGGAGACTATTCGGTTTCGTTAAAGGCCCCAGGGCGCAACAAGCA
CTTCCGCGTGCACGTGGAGCAGAACATGTACTGCATTGGGCAGAGGAAGT
TCCACTCGCTGGACCAACTGGTCGATCACTACCAAAGAGCGCCCATCTAC
ACGAATAAGCAGGGCGAAAAGCTGTATCTGGTGCGATCGCTGCCGAAGGC
CAATGGCACGGCAAGCTTTCTAGACCAT

BO09221.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 1647 CG3727-PD 1..1644 17..1660 8220 100 Plus
dock-RC 1647 CG3727-PC 1..1644 17..1660 8220 100 Plus
dock-RB 1647 CG3727-PB 1..1644 17..1660 8220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:53
Subject Length Description Subject Range Query Range Score Percent Strand
dock-RD 2825 CG3727-RD 771..2414 17..1660 8220 100 Plus
dock-RC 3583 CG3727-RC 619..2262 17..1660 8220 100 Plus
dock-RB 3618 CG3727-RB 654..2297 17..1660 8220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 831176..831626 1003..1453 2255 100 Plus
2L 23513712 2L 829536..829972 17..453 2185 100 Plus
2L 23513712 2L 830735..831085 655..1005 1755 100 Plus
2L 23513712 2L 831714..831920 1454..1660 1035 100 Plus
2L 23513712 2L 830144..830349 452..657 1030 100 Plus
Blast to na_te.dros performed 2014-11-27 14:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6944 75..298 177 55.7 Plus

BO09221.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:26 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 1..1647 17..1664 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:28 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 615..2272 9..1666 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:29 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RB 659..2297 22..1662 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:27 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RC 615..2272 9..1666 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:10 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
dock-RB 659..2297 22..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:10 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
2L 830738..831083 658..1003 100 -> Plus
2L 829541..829971 22..452 100 -> Plus
2L 830145..830349 453..657 100 -> Plus
2L 831177..831626 1004..1453 100 -> Plus
2L 831714..831920 1454..1662 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:29 Download gff for BO09221.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 829541..829971 22..452 100 -> Plus
arm_2L 830145..830349 453..657 100 -> Plus
arm_2L 830738..831083 658..1003 100 -> Plus
arm_2L 831177..831626 1004..1453 100 -> Plus
arm_2L 831714..831920 1454..1662 99   Plus

BO09221.pep Sequence

Translation from 16 to 1678

> BO09221.pep
MLEHPQRFVRNIPDSSASSQQYPQQQQHPPQLPQHQNLNLNQNQNLNQNQ
IYQYRPQVPVPVPGSPAHHQRHSSLSQQQQLHHHRTLSTASSCSAQHKSV
TFGQPALDCGGNGSGSANGSGSGNSSSGSAAGNAGTQSMAGNMKHGKSQD
DVCYVVAKYDYAAQGAQELDLRKNERYLLLDDSKHWWRVQNSRNQSGYVP
SNYVKKEKPSLFDSIKKKVKKGSGSKTLPNCSPSRQVESPTMSRRLPPDP
AEAIGTAVVKYNYQAQQPDELSLTKGTRILILEKSNDGWWRGQSGNSVGW
FPSNYTTEDCDNDGEIHTYAMAENVLDIVVALYSFTSNNDQELSFEKGDR
LEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNASASAG
NGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYY
GAITRSQCDTVLNGHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHV
EQNMYCIGQRKFHSLDQLVDHYQRAPIYTNKQGEKLYLVRSLPKANGTAS
FLDH

BO09221.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
dock-PD 548 CG3727-PD 1..548 1..548 2944 100 Plus
dock-PC 548 CG3727-PC 1..548 1..548 2944 100 Plus
dock-PB 548 CG3727-PB 1..548 1..548 2944 100 Plus
dock-PA 410 CG3727-PA 1..410 139..548 2205 100 Plus
Dap160-PH 1005 CG1099-PH 762..996 133..381 256 27.6 Plus