Clone Sequence Records
BO09221.3prime Sequence
960 bp (916 high quality bases) assembled on 2006-01-18
> BO09221.3prime
ATGGTCTAGAAAGCTTGCCGTGCCATTGGCCTTCGGCAGCGATCGCACCA
GATACAGCTTTTCGCCCTGCTTATTCGTGTAGATGGGCGCTCTTTGGTAG
TGATCGACCAGTTGGTCCAGCGAGTGGAACTTCCTCTGCCCAATGCAGTA
CATGTTCTGCTCCACGTGCACGCGGAAGTGCTTGTTGCGCCCTGGGGCCT
TTAACGAAACCGAATAGTCTCCCATGTTAGTCTCACTGTCTCTGATGAGG
AAGTCGCCATCGTGCCCGTGGCCGTTGAGCACCGTGTCGCACTGGCTGCG
GGTGATGGCTCCATAATACCACGACTTGCCCGCCAGATTTGGCCGCTCGA
TTGGCTGGCCGGAAGATTGCGCCGCCGGCTTATTACCCTCATTGCGCCGC
TCCATGGAGTCGTTTCCTCCGCCACCACCTGCGCCGCCATTACTTCCTCC
TCCATTTCCGTTTCCTGCACTGGCACTCGCATTACGATAGGGCGTGGCCA
GGTAGTCGTTCAACTCTTGGAGATAATTGCGTGGAACTAAACCGACTTGG
CCCTGATTGTTGCGAGCTTTGTACCAGTCCGGATCGGAGGCGGGCCGATC
CACGATCTCCAAGCGATCGCCCTTCTCGAACGAGAGCTCCTGGTCGTTGT
TTGACGTGAAGCTGTACAGCGCGACCACAATATCAAGCACGTTCTCGGCC
ATTGCGTAGGTGTGGATCTCGCCGTCGTTATCACAATCCTCCGTTGTGTA
GTTGCTGGGGAACCAGCCGACGGAATTGCCGCTCTGTCCACGCCACCATC
CATCGTTGGACTTCTCCAGGATGAGGATTCGTGTGCCCTTGGTCAGCGAA
AGTTCATCGGGCTGCTGGGCCTGATAGTTATACTTGACCACAGCCGTTCC
GATGGCCTCTGCGGGATCTGGGGGGAAGTCGGCGCGACATGGTTGGACTC
TCGACCTGTC
BO09221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3727-PA | 1233 | dock-RA | 325..1230 | 924..19 | 4530 | 100 | Minus |
CG3727-PB | 1647 | dock-RB | 739..1644 | 924..19 | 4530 | 100 | Minus |
CG3727-PC | 1647 | dock-RC | 739..1644 | 924..19 | 4530 | 100 | Minus |
CG3727-PA | 1233 | dock-RA | 290..329 | 960..921 | 200 | 100 | Minus |
CG3727-PB | 1647 | dock-RB | 704..743 | 960..921 | 200 | 100 | Minus |
CG3727-PC | 1647 | dock-RC | 704..743 | 960..921 | 200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dock-RD | 2825 | CG3727-RD | 1474..2414 | 960..19 | 4685 | 99.9 | Minus |
dock-RC | 3583 | CG3727-RC | 1322..2262 | 960..19 | 4685 | 99.9 | Minus |
dock-RB | 3618 | CG3727-RB | 1357..2297 | 960..19 | 4685 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 831176..831626 | 676..226 | 2255 | 100 | Minus |
2L | 23513712 | 2L | 830800..831085 | 960..674 | 1385 | 99.7 | Minus |
2L | 23513712 | 2L | 831714..831920 | 225..19 | 1035 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 14:01:45 has no hits.
BO09221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:58 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-PB | 704..1647 | 15..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:38 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3727-PC | 704..1647 | 15..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:49 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 1357..2302 | 13..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:54 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 1357..2302 | 13..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:54 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 830800..831083 | 676..960 | 99 | -> | Minus |
2L | 831177..831626 | 226..675 | 100 | -> | Minus |
2L | 831714..831925 | 13..225 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:49 Download gff for
BO09221.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 830800..831083 | 676..960 | 99 | -> | Minus |
arm_2L | 831177..831626 | 226..675 | 100 | -> | Minus |
arm_2L | 831714..831925 | 13..225 | 99 | | Minus |
BO09221.5prime Sequence
930 bp (805 high quality bases) assembled on 2006-01-17
> BO09221.5prime
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGG
CAATTCCGTCGGCTGGTTCCCCAGCAACTA
BO09221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3727-PB | 1647 | dock-RB | 1..914 | 17..930 | 4570 | 100 | Plus |
CG3727-PC | 1647 | dock-RC | 1..914 | 17..930 | 4570 | 100 | Plus |
CG3727-PA | 1233 | dock-RA | 1..500 | 431..930 | 2500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:43:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dock-RD | 2825 | CG3727-RD | 771..1684 | 17..930 | 4570 | 100 | Plus |
dock-RC | 3583 | CG3727-RC | 619..1532 | 17..930 | 4570 | 100 | Plus |
dock-RB | 3618 | CG3727-RB | 654..1567 | 17..930 | 4570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 829536..829972 | 17..453 | 2185 | 100 | Plus |
2L | 23513712 | 2L | 830735..831010 | 655..930 | 1380 | 100 | Plus |
2L | 23513712 | 2L | 830144..830349 | 452..657 | 1030 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 11:43:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 75..298 | 177 | 55.7 | Plus |
BO09221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:04:59 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-PB | 1..913 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:40 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3727-PC | 1..913 | 17..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:27:13 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 645..1566 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:57 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 645..1566 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:57 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 829527..829971 | 9..452 | 99 | -> | Plus |
2L | 830145..830349 | 453..657 | 100 | -> | Plus |
2L | 830738..831009 | 658..929 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:27:13 Download gff for
BO09221.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 830145..830349 | 453..657 | 100 | -> | Plus |
arm_2L | 829527..829971 | 9..452 | 99 | -> | Plus |
arm_2L | 830738..831009 | 658..929 | 100 | | Plus |
BO09221.complete Sequence
1678 bp (1678 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631433
> BO09221.complete
GAAGTTATCAGTCGACATGTTGGAACACCCCCAGCGGTTTGTGCGCAACA
TCCCCGACTCCTCAGCCAGTTCGCAGCAGTATCCGCAGCAGCAGCAGCAT
CCGCCACAGCTGCCGCAGCACCAGAATCTGAATCTCAACCAGAATCAGAA
CCTGAACCAGAATCAGATCTACCAGTACCGTCCCCAGGTGCCCGTGCCCG
TTCCCGGCTCACCTGCCCATCACCAGCGGCACTCTTCGCTCTCCCAGCAA
CAGCAGTTGCACCACCACCGCACCCTGTCCACCGCCTCCTCCTGCAGCGC
CCAGCACAAAAGTGTGACCTTCGGCCAGCCAGCGCTCGACTGCGGCGGCA
ACGGCAGCGGAAGCGCCAACGGAAGCGGTAGCGGCAACTCCTCCAGTGGC
AGTGCCGCCGGCAACGCTGGAACCCAATCAATGGCGGGCAACATGAAGCA
CGGCAAATCTCAGGACGACGTCTGCTACGTGGTAGCCAAGTACGACTATG
CGGCGCAGGGTGCCCAGGAGCTGGATCTGCGCAAGAACGAGCGCTACCTG
CTGCTGGACGACTCCAAGCACTGGTGGCGCGTCCAGAACAGTCGCAACCA
GTCCGGCTACGTGCCAAGCAACTATGTGAAGAAGGAGAAGCCCTCGCTCT
TCGACAGCATTAAGAAGAAGGTGAAAAAGGGCTCCGGATCGAAGACACTG
CCTAATTGTTCGCCTTCGCGACAGGTCGAGAGTCCAACCATGTCGCGCCG
ACTTCCCCCAGATCCCGCAGAGGCCATCGGAACGGCTGTGGTCAAGTATA
ACTATCAGGCCCAGCAGCCCGATGAACTTTCGCTGACCAAGGGCACACGA
ATCCTCATCCTGGAGAAGTCCAACGATGGATGGTGGCGTGGACAGAGCGG
CAATTCCGTCGGCTGGTTCCCCAGCAACTACACAACGGAGGATTGTGATA
ACGACGGCGAGATCCACACCTACGCAATGGCCGAGAACGTGCTTGATATT
GTGGTCGCGCTGTACAGCTTCACGTCAAACAACGACCAGGAGCTCTCGTT
CGAGAAGGGCGATCGCTTGGAGATCGTGGATCGGCCCGCCTCCGATCCGG
ACTGGTACAAAGCTCGCAACAATCAGGGCCAAGTCGGTTTAGTTCCACGC
AATTATCTCCAAGAGTTGAACGACTACCTGGCCACGCCCTATCGTAATGC
GAGTGCCAGTGCAGGAAACGGAAATGGAGGAGGAAGTAATGGCGGCGCAG
GTGGTGGCGGAGGAAACGACTCCATGGAGCGGCGCAATGAGGGTAATAAG
CCGGCGGCGCAATCTTCCGGCCAGCCAATCGAGCGGCCAAATCTGGCGGG
CAAGTCGTGGTATTATGGAGCCATCACCCGCAGCCAGTGCGACACGGTGC
TCAACGGCCACGGGCACGATGGCGACTTCCTCATCAGAGACAGTGAGACT
AACATGGGAGACTATTCGGTTTCGTTAAAGGCCCCAGGGCGCAACAAGCA
CTTCCGCGTGCACGTGGAGCAGAACATGTACTGCATTGGGCAGAGGAAGT
TCCACTCGCTGGACCAACTGGTCGATCACTACCAAAGAGCGCCCATCTAC
ACGAATAAGCAGGGCGAAAAGCTGTATCTGGTGCGATCGCTGCCGAAGGC
CAATGGCACGGCAAGCTTTCTAGACCAT
BO09221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dock-RD | 1647 | CG3727-PD | 1..1644 | 17..1660 | 8220 | 100 | Plus |
dock-RC | 1647 | CG3727-PC | 1..1644 | 17..1660 | 8220 | 100 | Plus |
dock-RB | 1647 | CG3727-PB | 1..1644 | 17..1660 | 8220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:39:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dock-RD | 2825 | CG3727-RD | 771..2414 | 17..1660 | 8220 | 100 | Plus |
dock-RC | 3583 | CG3727-RC | 619..2262 | 17..1660 | 8220 | 100 | Plus |
dock-RB | 3618 | CG3727-RB | 654..2297 | 17..1660 | 8220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 831176..831626 | 1003..1453 | 2255 | 100 | Plus |
2L | 23513712 | 2L | 829536..829972 | 17..453 | 2185 | 100 | Plus |
2L | 23513712 | 2L | 830735..831085 | 655..1005 | 1755 | 100 | Plus |
2L | 23513712 | 2L | 831714..831920 | 1454..1660 | 1035 | 100 | Plus |
2L | 23513712 | 2L | 830144..830349 | 452..657 | 1030 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 14:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6944 | 75..298 | 177 | 55.7 | Plus |
BO09221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:26 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RC | 1..1647 | 17..1664 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:28 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RC | 615..2272 | 9..1666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:29 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 659..2297 | 22..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:27 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RC | 615..2272 | 9..1666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:50:10 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dock-RB | 659..2297 | 22..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:50:10 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 830738..831083 | 658..1003 | 100 | -> | Plus |
2L | 829541..829971 | 22..452 | 100 | -> | Plus |
2L | 830145..830349 | 453..657 | 100 | -> | Plus |
2L | 831177..831626 | 1004..1453 | 100 | -> | Plus |
2L | 831714..831920 | 1454..1662 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:29 Download gff for
BO09221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 829541..829971 | 22..452 | 100 | -> | Plus |
arm_2L | 830145..830349 | 453..657 | 100 | -> | Plus |
arm_2L | 830738..831083 | 658..1003 | 100 | -> | Plus |
arm_2L | 831177..831626 | 1004..1453 | 100 | -> | Plus |
arm_2L | 831714..831920 | 1454..1662 | 99 | | Plus |
BO09221.pep Sequence
Translation from 16 to 1678
> BO09221.pep
MLEHPQRFVRNIPDSSASSQQYPQQQQHPPQLPQHQNLNLNQNQNLNQNQ
IYQYRPQVPVPVPGSPAHHQRHSSLSQQQQLHHHRTLSTASSCSAQHKSV
TFGQPALDCGGNGSGSANGSGSGNSSSGSAAGNAGTQSMAGNMKHGKSQD
DVCYVVAKYDYAAQGAQELDLRKNERYLLLDDSKHWWRVQNSRNQSGYVP
SNYVKKEKPSLFDSIKKKVKKGSGSKTLPNCSPSRQVESPTMSRRLPPDP
AEAIGTAVVKYNYQAQQPDELSLTKGTRILILEKSNDGWWRGQSGNSVGW
FPSNYTTEDCDNDGEIHTYAMAENVLDIVVALYSFTSNNDQELSFEKGDR
LEIVDRPASDPDWYKARNNQGQVGLVPRNYLQELNDYLATPYRNASASAG
NGNGGGSNGGAGGGGGNDSMERRNEGNKPAAQSSGQPIERPNLAGKSWYY
GAITRSQCDTVLNGHGHDGDFLIRDSETNMGDYSVSLKAPGRNKHFRVHV
EQNMYCIGQRKFHSLDQLVDHYQRAPIYTNKQGEKLYLVRSLPKANGTAS
FLDH
BO09221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dock-PD | 548 | CG3727-PD | 1..548 | 1..548 | 2944 | 100 | Plus |
dock-PC | 548 | CG3727-PC | 1..548 | 1..548 | 2944 | 100 | Plus |
dock-PB | 548 | CG3727-PB | 1..548 | 1..548 | 2944 | 100 | Plus |
dock-PA | 410 | CG3727-PA | 1..410 | 139..548 | 2205 | 100 | Plus |
Dap160-PH | 1005 | CG1099-PH | 762..996 | 133..381 | 256 | 27.6 | Plus |