Clone BO09222 Report

Search the DGRC for BO09222

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptCG8121-RA
Protein status:BO09222.pep: validated full length
Sequenced Size:808

Clone Sequence Records

BO09222.3prime Sequence

806 bp (805 high quality bases) assembled on 2006-01-18

> BO09222.3prime
ATGGTCTAGAAAGCTTGCGCCCACGGGCATGGTGGACACGGTGCTGTGAG
GAGTGGTTGGCCGTGATCCTGCAAGTGAGTTTGCTGTCGATGCGTGCAGG
GAAGCCATTGTGCCCATGCGTAAATGGGCTAGATCCTCCAGCTTGGTCAG
ATCCACCAGTTCCAAAAACAGAGAGTACACCACGGCCCATCCATATATAG
ACAGTACACAAAAAATGGTCCAAAGGAGCACCATAATCACATTGTAGGCA
AAGTACAGATCATTGACAATGGCAAAGAAGATCAGTGCCAAAGCCCGCCA
AACAGTAAATATGGCAAAGGACCACAGCCATGGCATAACCTTCCTCTCGT
ATTCCTTGCGCAGAGCCACGCAGAGAAGGACACTGGTCACAAAGTTTATC
AGCGCCATGATAAGCGAGAACAGGGCAAAGACAATGAGCATATTGCGAAC
ATGCTTGTTGCCCACATAGACGAACTCATAGGATATGATGTAGTAGCCAT
AATGTGTGGATCCTGGCGCAGCCATAGCATAGCAGTAGATGTCAAAGATG
CTCGTGGCGATGGTGAAGAGGGACAGAAAAATGGCAAACAATCCGACCAG
CATGGCACCCTTCTGTATATCGATGTACTGATTGTTTTTAAGCAACGGTC
GCTGGTACCAAGGAATCCTGACGGATCGCGTGGATCGGGACATCTTGGAG
TGTAAATTCGTCGAGGATCTTCCCGTGGCATGGGAATAAACCGACGGATT
GGACCGATATGTGGAGGGCGTTTTCCTACCGTAATTCATCATGTCGACTG
ATAACT

BO09222.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PA 777 CG8121-RA 1..774 792..19 3870 100 Minus
CG8121-PC 777 CG8121-RC 1..774 792..19 3870 100 Minus
CG8121-PB 777 CG8121-RB 1..774 792..19 3870 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1094 793..19 3875 100 Minus
CG8121-RC 1298 CG8121-RC 145..919 793..19 3875 100 Minus
CG8121-RA 1504 CG8121-RA 148..922 793..19 3875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 356..118 1195 100 Minus
3R 32079331 3R 9335699..9335839 720..580 705 100 Minus
3R 32079331 3R 9335900..9336029 579..450 650 100 Minus
3R 32079331 3R 9336779..9336877 117..19 495 100 Minus
3R 32079331 3R 9336157..9336253 450..354 485 100 Minus
3R 32079331 3R 9335561..9335635 793..719 375 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:11:55 has no hits.

BO09222.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:00 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PA 1..777 15..792 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:41 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PB 1..777 15..792 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:49:01 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 15..799 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:02 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 15..799 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:02 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9335555..9335635 719..799 96 -> Minus
3R 9335701..9335839 580..718 100 -> Minus
3R 9335900..9336029 450..579 100 -> Minus
3R 9336158..9336252 355..449 100 -> Minus
3R 9336483..9336719 118..354 100 -> Minus
3R 9336779..9336880 15..117 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:49:01 Download gff for BO09222.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161423..5161561 580..718 100 -> Minus
arm_3R 5161277..5161357 719..799 96 -> Minus
arm_3R 5161622..5161751 450..579 100 -> Minus
arm_3R 5161880..5161974 355..449 100 -> Minus
arm_3R 5162205..5162441 118..354 100 -> Minus
arm_3R 5162501..5162602 15..117 98   Minus

BO09222.5prime Sequence

806 bp (805 high quality bases) assembled on 2006-01-18

> BO09222.5prime
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCGCAAGCTTTC
TAGACC

BO09222.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PA 777 CG8121-RA 1..774 17..790 3870 100 Plus
CG8121-PC 777 CG8121-RC 1..774 17..790 3870 100 Plus
CG8121-PB 777 CG8121-RB 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1094 16..790 3875 100 Plus
CG8121-RC 1298 CG8121-RC 145..919 16..790 3875 100 Plus
CG8121-RA 1504 CG8121-RA 148..922 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 453..691 1195 100 Plus
3R 32079331 3R 9335699..9335839 89..229 705 100 Plus
3R 32079331 3R 9335900..9336029 230..359 650 100 Plus
3R 32079331 3R 9336779..9336877 692..790 495 100 Plus
3R 32079331 3R 9336157..9336253 359..455 485 100 Plus
3R 32079331 3R 9335561..9335635 16..90 375 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:36:39 has no hits.

BO09222.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:01 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PA 1..777 17..794 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:42 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-PB 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:54 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 10..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:40 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 142..925 10..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:40 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9336483..9336719 455..691 100 -> Plus
3R 9336779..9336880 692..794 98   Plus
3R 9335555..9335635 10..90 96 -> Plus
3R 9335701..9335839 91..229 100 -> Plus
3R 9335900..9336029 230..359 100 -> Plus
3R 9336158..9336252 360..454 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:54 Download gff for BO09222.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161277..5161357 10..90 96 -> Plus
arm_3R 5161423..5161561 91..229 100 -> Plus
arm_3R 5161622..5161751 230..359 100 -> Plus
arm_3R 5161880..5161974 360..454 100 -> Plus
arm_3R 5162205..5162441 455..691 100 -> Plus
arm_3R 5162501..5162602 692..794 98   Plus

BO09222.complete Sequence

808 bp (808 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631434

> BO09222.complete
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCGCAAGCTTTC
TAGACCAT

BO09222.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 777 CG8121-PB 1..774 17..790 3870 100 Plus
CG8121-RC 777 CG8121-PC 1..774 17..790 3870 100 Plus
CG8121-RA 777 CG8121-PA 1..774 17..790 3870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-RB 1473 CG8121-RB 320..1094 16..790 3875 100 Plus
CG8121-RC 1298 CG8121-RC 145..919 16..790 3875 100 Plus
CG8121-RA 1504 CG8121-RA 148..922 16..790 3875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9336481..9336719 453..691 1195 100 Plus
3R 32079331 3R 9335699..9335839 89..229 705 100 Plus
3R 32079331 3R 9335900..9336029 230..359 650 100 Plus
3R 32079331 3R 9336779..9336877 692..790 495 100 Plus
3R 32079331 3R 9336157..9336253 359..455 485 100 Plus
3R 32079331 3R 9335561..9335635 16..90 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:12:36 has no hits.

BO09222.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:12 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 1..777 17..794 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:56 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 314..1097 10..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 149..922 17..792 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:12 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RB 314..1097 10..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:48 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
CG8121-RA 149..922 17..792 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:48 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9335562..9335635 17..90 100 -> Plus
3R 9335701..9335839 91..229 100 -> Plus
3R 9335900..9336029 230..359 100 -> Plus
3R 9336158..9336252 360..454 100 -> Plus
3R 9336483..9336719 455..691 100 -> Plus
3R 9336779..9336877 692..792 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:47 Download gff for BO09222.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5161284..5161357 17..90 100 -> Plus
arm_3R 5161423..5161561 91..229 100 -> Plus
arm_3R 5161622..5161751 230..359 100 -> Plus
arm_3R 5161880..5161974 360..454 100 -> Plus
arm_3R 5162205..5162441 455..691 100 -> Plus
arm_3R 5162501..5162599 692..792 98   Plus

BO09222.pep Sequence

Translation from 16 to 808

> BO09222.pep
MMNYGRKTPSTYRSNPSVYSHATGRSSTNLHSKMSRSTRSVRIPWYQRPL
LKNNQYIDIQKGAMLVGLFAIFLSLFTIATSIFDIYCYAMAAPGSTHYGY
YIISYEFVYVGNKHVRNMLIVFALFSLIMALINFVTSVLLCVALRKEYER
KVMPWLWSFAIFTVWRALALIFFAIVNDLYFAYNVIMVLLWTIFCVLSIY
GWAVVYSLFLELVDLTKLEDLAHLRMGTMASLHASTANSLAGSRPTTPHS
TVSTMPVGASFLDH

BO09222.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG8121-PB 258 CG8121-PB 1..258 1..258 1338 100 Plus
CG8121-PC 258 CG8121-PC 1..258 1..258 1338 100 Plus
CG8121-PA 258 CG8121-PA 1..258 1..258 1338 100 Plus