Clone Sequence Records
BO09222.3prime Sequence
806 bp (805 high quality bases) assembled on 2006-01-18
> BO09222.3prime
ATGGTCTAGAAAGCTTGCGCCCACGGGCATGGTGGACACGGTGCTGTGAG
GAGTGGTTGGCCGTGATCCTGCAAGTGAGTTTGCTGTCGATGCGTGCAGG
GAAGCCATTGTGCCCATGCGTAAATGGGCTAGATCCTCCAGCTTGGTCAG
ATCCACCAGTTCCAAAAACAGAGAGTACACCACGGCCCATCCATATATAG
ACAGTACACAAAAAATGGTCCAAAGGAGCACCATAATCACATTGTAGGCA
AAGTACAGATCATTGACAATGGCAAAGAAGATCAGTGCCAAAGCCCGCCA
AACAGTAAATATGGCAAAGGACCACAGCCATGGCATAACCTTCCTCTCGT
ATTCCTTGCGCAGAGCCACGCAGAGAAGGACACTGGTCACAAAGTTTATC
AGCGCCATGATAAGCGAGAACAGGGCAAAGACAATGAGCATATTGCGAAC
ATGCTTGTTGCCCACATAGACGAACTCATAGGATATGATGTAGTAGCCAT
AATGTGTGGATCCTGGCGCAGCCATAGCATAGCAGTAGATGTCAAAGATG
CTCGTGGCGATGGTGAAGAGGGACAGAAAAATGGCAAACAATCCGACCAG
CATGGCACCCTTCTGTATATCGATGTACTGATTGTTTTTAAGCAACGGTC
GCTGGTACCAAGGAATCCTGACGGATCGCGTGGATCGGGACATCTTGGAG
TGTAAATTCGTCGAGGATCTTCCCGTGGCATGGGAATAAACCGACGGATT
GGACCGATATGTGGAGGGCGTTTTCCTACCGTAATTCATCATGTCGACTG
ATAACT
BO09222.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PA | 777 | CG8121-RA | 1..774 | 792..19 | 3870 | 100 | Minus |
CG8121-PC | 777 | CG8121-RC | 1..774 | 792..19 | 3870 | 100 | Minus |
CG8121-PB | 777 | CG8121-RB | 1..774 | 792..19 | 3870 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1094 | 793..19 | 3875 | 100 | Minus |
CG8121-RC | 1298 | CG8121-RC | 145..919 | 793..19 | 3875 | 100 | Minus |
CG8121-RA | 1504 | CG8121-RA | 148..922 | 793..19 | 3875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:11:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 356..118 | 1195 | 100 | Minus |
3R | 32079331 | 3R | 9335699..9335839 | 720..580 | 705 | 100 | Minus |
3R | 32079331 | 3R | 9335900..9336029 | 579..450 | 650 | 100 | Minus |
3R | 32079331 | 3R | 9336779..9336877 | 117..19 | 495 | 100 | Minus |
3R | 32079331 | 3R | 9336157..9336253 | 450..354 | 485 | 100 | Minus |
3R | 32079331 | 3R | 9335561..9335635 | 793..719 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:11:55 has no hits.
BO09222.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:00 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:41 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PB | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:49:01 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 15..799 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:52:02 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 15..799 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:52:02 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335555..9335635 | 719..799 | 96 | -> | Minus |
3R | 9335701..9335839 | 580..718 | 100 | -> | Minus |
3R | 9335900..9336029 | 450..579 | 100 | -> | Minus |
3R | 9336158..9336252 | 355..449 | 100 | -> | Minus |
3R | 9336483..9336719 | 118..354 | 100 | -> | Minus |
3R | 9336779..9336880 | 15..117 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:49:01 Download gff for
BO09222.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161423..5161561 | 580..718 | 100 | -> | Minus |
arm_3R | 5161277..5161357 | 719..799 | 96 | -> | Minus |
arm_3R | 5161622..5161751 | 450..579 | 100 | -> | Minus |
arm_3R | 5161880..5161974 | 355..449 | 100 | -> | Minus |
arm_3R | 5162205..5162441 | 118..354 | 100 | -> | Minus |
arm_3R | 5162501..5162602 | 15..117 | 98 | | Minus |
BO09222.5prime Sequence
806 bp (805 high quality bases) assembled on 2006-01-18
> BO09222.5prime
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCGCAAGCTTTC
TAGACC
BO09222.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PA | 777 | CG8121-RA | 1..774 | 17..790 | 3870 | 100 | Plus |
CG8121-PC | 777 | CG8121-RC | 1..774 | 17..790 | 3870 | 100 | Plus |
CG8121-PB | 777 | CG8121-RB | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1094 | 16..790 | 3875 | 100 | Plus |
CG8121-RC | 1298 | CG8121-RC | 145..919 | 16..790 | 3875 | 100 | Plus |
CG8121-RA | 1504 | CG8121-RA | 148..922 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 453..691 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 9335699..9335839 | 89..229 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9335900..9336029 | 230..359 | 650 | 100 | Plus |
3R | 32079331 | 3R | 9336779..9336877 | 692..790 | 495 | 100 | Plus |
3R | 32079331 | 3R | 9336157..9336253 | 359..455 | 485 | 100 | Plus |
3R | 32079331 | 3R | 9335561..9335635 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:39 has no hits.
BO09222.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:01 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:42 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-PB | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:54 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 10..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:40 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 142..925 | 10..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:40 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9336483..9336719 | 455..691 | 100 | -> | Plus |
3R | 9336779..9336880 | 692..794 | 98 | | Plus |
3R | 9335555..9335635 | 10..90 | 96 | -> | Plus |
3R | 9335701..9335839 | 91..229 | 100 | -> | Plus |
3R | 9335900..9336029 | 230..359 | 100 | -> | Plus |
3R | 9336158..9336252 | 360..454 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:54 Download gff for
BO09222.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161277..5161357 | 10..90 | 96 | -> | Plus |
arm_3R | 5161423..5161561 | 91..229 | 100 | -> | Plus |
arm_3R | 5161622..5161751 | 230..359 | 100 | -> | Plus |
arm_3R | 5161880..5161974 | 360..454 | 100 | -> | Plus |
arm_3R | 5162205..5162441 | 455..691 | 100 | -> | Plus |
arm_3R | 5162501..5162602 | 692..794 | 98 | | Plus |
BO09222.complete Sequence
808 bp (808 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631434
> BO09222.complete
GAAGTTATCAGTCGACATGATGAATTACGGTAGGAAAACGCCCTCCACAT
ATCGGTCCAATCCGTCGGTTTATTCCCATGCCACGGGAAGATCCTCGACG
AATTTACACTCCAAGATGTCCCGATCCACGCGATCCGTCAGGATTCCTTG
GTACCAGCGACCGTTGCTTAAAAACAATCAGTACATCGATATACAGAAGG
GTGCCATGCTGGTCGGATTGTTTGCCATTTTTCTGTCCCTCTTCACCATC
GCCACGAGCATCTTTGACATCTACTGCTATGCTATGGCTGCGCCAGGATC
CACACATTATGGCTACTACATCATATCCTATGAGTTCGTCTATGTGGGCA
ACAAGCATGTTCGCAATATGCTCATTGTCTTTGCCCTGTTCTCGCTTATC
ATGGCGCTGATAAACTTTGTGACCAGTGTCCTTCTCTGCGTGGCTCTGCG
CAAGGAATACGAGAGGAAGGTTATGCCATGGCTGTGGTCCTTTGCCATAT
TTACTGTTTGGCGGGCTTTGGCACTGATCTTCTTTGCCATTGTCAATGAT
CTGTACTTTGCCTACAATGTGATTATGGTGCTCCTTTGGACCATTTTTTG
TGTACTGTCTATATATGGATGGGCCGTGGTGTACTCTCTGTTTTTGGAAC
TGGTGGATCTGACCAAGCTGGAGGATCTAGCCCATTTACGCATGGGCACA
ATGGCTTCCCTGCACGCATCGACAGCAAACTCACTTGCAGGATCACGGCC
AACCACTCCTCACAGCACCGTGTCCACCATGCCCGTGGGCGCAAGCTTTC
TAGACCAT
BO09222.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:12:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 777 | CG8121-PB | 1..774 | 17..790 | 3870 | 100 | Plus |
CG8121-RC | 777 | CG8121-PC | 1..774 | 17..790 | 3870 | 100 | Plus |
CG8121-RA | 777 | CG8121-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:12:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-RB | 1473 | CG8121-RB | 320..1094 | 16..790 | 3875 | 100 | Plus |
CG8121-RC | 1298 | CG8121-RC | 145..919 | 16..790 | 3875 | 100 | Plus |
CG8121-RA | 1504 | CG8121-RA | 148..922 | 16..790 | 3875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:12:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9336481..9336719 | 453..691 | 1195 | 100 | Plus |
3R | 32079331 | 3R | 9335699..9335839 | 89..229 | 705 | 100 | Plus |
3R | 32079331 | 3R | 9335900..9336029 | 230..359 | 650 | 100 | Plus |
3R | 32079331 | 3R | 9336779..9336877 | 692..790 | 495 | 100 | Plus |
3R | 32079331 | 3R | 9336157..9336253 | 359..455 | 485 | 100 | Plus |
3R | 32079331 | 3R | 9335561..9335635 | 16..90 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:12:36 has no hits.
BO09222.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:20:12 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:38:56 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 314..1097 | 10..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:47 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 149..922 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:20:12 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RB | 314..1097 | 10..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:48 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8121-RA | 149..922 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:48 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9335562..9335635 | 17..90 | 100 | -> | Plus |
3R | 9335701..9335839 | 91..229 | 100 | -> | Plus |
3R | 9335900..9336029 | 230..359 | 100 | -> | Plus |
3R | 9336158..9336252 | 360..454 | 100 | -> | Plus |
3R | 9336483..9336719 | 455..691 | 100 | -> | Plus |
3R | 9336779..9336877 | 692..792 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:47 Download gff for
BO09222.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5161284..5161357 | 17..90 | 100 | -> | Plus |
arm_3R | 5161423..5161561 | 91..229 | 100 | -> | Plus |
arm_3R | 5161622..5161751 | 230..359 | 100 | -> | Plus |
arm_3R | 5161880..5161974 | 360..454 | 100 | -> | Plus |
arm_3R | 5162205..5162441 | 455..691 | 100 | -> | Plus |
arm_3R | 5162501..5162599 | 692..792 | 98 | | Plus |
BO09222.pep Sequence
Translation from 16 to 808
> BO09222.pep
MMNYGRKTPSTYRSNPSVYSHATGRSSTNLHSKMSRSTRSVRIPWYQRPL
LKNNQYIDIQKGAMLVGLFAIFLSLFTIATSIFDIYCYAMAAPGSTHYGY
YIISYEFVYVGNKHVRNMLIVFALFSLIMALINFVTSVLLCVALRKEYER
KVMPWLWSFAIFTVWRALALIFFAIVNDLYFAYNVIMVLLWTIFCVLSIY
GWAVVYSLFLELVDLTKLEDLAHLRMGTMASLHASTANSLAGSRPTTPHS
TVSTMPVGASFLDH
BO09222.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:30:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8121-PB | 258 | CG8121-PB | 1..258 | 1..258 | 1338 | 100 | Plus |
CG8121-PC | 258 | CG8121-PC | 1..258 | 1..258 | 1338 | 100 | Plus |
CG8121-PA | 258 | CG8121-PA | 1..258 | 1..258 | 1338 | 100 | Plus |