Clone Sequence Records
BO09228.5prime Sequence
617 bp (616 high quality bases) assembled on 2006-01-18
> BO09228.5prime
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TGCAAGCTTTCTAGACC
BO09228.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PA | 588 | CG32428-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..929 | 17..601 | 2925 | 100 | Plus |
CG32428-RA | 1213 | CG32428-RA | 399..983 | 17..601 | 2925 | 100 | Plus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 350..17 | 1670 | 100 | Minus |
3L | 28110227 | 3L | 20470898..20471149 | 601..350 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:38:29 has no hits.
BO09228.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:11 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:56 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:34 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..983 | 13..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:33 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..983 | 13..601 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:33 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20470898..20471148 | 351..601 | 100 | <- | Minus |
3L | 20472641..20472976 | 13..350 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:34 Download gff for
BO09228.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463998..20464248 | 351..601 | 100 | <- | Minus |
arm_3L | 20465741..20466076 | 13..350 | 99 | | Minus |
BO09228.3prime Sequence
617 bp (616 high quality bases) assembled on 2006-01-18
> BO09228.3prime
ATGGTCTAGAAAGCTTGCAATCATGTGCGACATCATGCAACGACTCACAT
CACGGTTGGCGCGATGCAAATGACCTTGATAATGCTGATGAATGCGCTGA
TATTGATGTGGCTGCTGTGGATGTTGCTGTTGCTCTTGATGTTGCTGCTG
CTGCGCTGGAAAACTCGTCTCCGATTCCATCATCATCATGCCGCCGGTGG
CCTGCATCTCGTAATCCATCAAAGAGGCCTGCGTTCCAATTATTTGTGTG
GCAGGCAAGGAAAAGAAATCATTGCAGTACTGGGCGGCCAAGTCAGACTC
GTCGTAGCGACATCTCTTGGTGTACACCGGTTGGTCCGTGTCCAAATCCC
CGACAGGATTGTGACCGGGATTCAGGCGCTTCTTGCAGCGCAGGACTTCC
GGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGGTTATTGCCATCATT
GTTGTTGTTGTTGTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGAT
TGAACGGATCCATCGAAGGACGCAGCGCTCCAGTTTCGAAAGTGGCGGCC
GCCGACGACGACGGATCACCATGTGCCCAGCACTCGAAGTTCGTCAAAAC
CATGTCGACTGATAACT
BO09228.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PA | 588 | CG32428-RA | 1..585 | 603..19 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..929 | 603..19 | 2925 | 100 | Minus |
CG32428-RA | 1213 | CG32428-RA | 399..983 | 603..19 | 2925 | 100 | Minus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 603..75 | 2645 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 270..603 | 1670 | 100 | Plus |
3L | 28110227 | 3L | 20470898..20471149 | 19..270 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 14:13:03 has no hits.
BO09228.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:10 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:55 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-PA | 1..588 | 18..603 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:59 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..983 | 19..607 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:59:09 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 395..983 | 19..607 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:59:09 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20470898..20471148 | 19..269 | 100 | <- | Plus |
3L | 20472641..20472976 | 270..607 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:59 Download gff for
BO09228.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463998..20464248 | 19..269 | 100 | <- | Plus |
arm_3L | 20465741..20466076 | 270..607 | 99 | | Plus |
BO09228.complete Sequence
619 bp (619 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631435
> BO09228.complete
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TGCAAGCTTTCTAGACCAT
BO09228.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 588 | CG32428-PB | 1..585 | 17..601 | 2925 | 100 | Plus |
CG32428-RA | 588 | CG32428-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
CG32428-RC | 717 | CG32428-PC | 1..529 | 17..545 | 2645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-RB | 1804 | CG32428-RB | 345..929 | 17..601 | 2925 | 100 | Plus |
CG32428-RA | 1213 | CG32428-RA | 399..983 | 17..601 | 2925 | 100 | Plus |
CG32428-RC | 1238 | CG32428-RC | 399..927 | 17..545 | 2645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20472641..20472974 | 350..17 | 1670 | 100 | Minus |
3L | 28110227 | 3L | 20470898..20471149 | 601..350 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:59:54 has no hits.
BO09228.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:19 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 1..588 | 17..602 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:43 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RB | 319..907 | 13..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:14 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 399..983 | 17..603 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:19 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 371..959 | 13..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:02 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32428-RA | 399..983 | 17..603 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:02 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20470896..20471148 | 351..603 | 99 | <- | Minus |
3L | 20472641..20472974 | 17..350 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:14 Download gff for
BO09228.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20463996..20464248 | 351..603 | 99 | <- | Minus |
arm_3L | 20465741..20466074 | 17..350 | 100 | | Minus |
BO09228.pep Sequence
Translation from 16 to 619
> BO09228.pep
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMIASFLD
H
BO09228.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32428-PB | 195 | CG32428-PB | 1..195 | 1..195 | 1066 | 100 | Plus |
CG32428-PA | 195 | CG32428-PA | 1..195 | 1..195 | 1066 | 100 | Plus |
CG32428-PC | 238 | CG32428-PC | 1..176 | 1..176 | 961 | 100 | Plus |