Clone BO09228 Report

Search the DGRC for BO09228

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG32428-RA
Protein status:BO09228.pep: validated full length
Sequenced Size:619

Clone Sequence Records

BO09228.5prime Sequence

617 bp (616 high quality bases) assembled on 2006-01-18

> BO09228.5prime
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TGCAAGCTTTCTAGACC

BO09228.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PA 588 CG32428-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..929 17..601 2925 100 Plus
CG32428-RA 1213 CG32428-RA 399..983 17..601 2925 100 Plus
CG32428-RC 1238 CG32428-RC 399..927 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 350..17 1670 100 Minus
3L 28110227 3L 20470898..20471149 601..350 1260 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:38:29 has no hits.

BO09228.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:11 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..602 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:56 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:34 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..983 13..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:42:33 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..983 13..601 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:42:33 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20470898..20471148 351..601 100 <- Minus
3L 20472641..20472976 13..350 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:34 Download gff for BO09228.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463998..20464248 351..601 100 <- Minus
arm_3L 20465741..20466076 13..350 99   Minus

BO09228.3prime Sequence

617 bp (616 high quality bases) assembled on 2006-01-18

> BO09228.3prime
ATGGTCTAGAAAGCTTGCAATCATGTGCGACATCATGCAACGACTCACAT
CACGGTTGGCGCGATGCAAATGACCTTGATAATGCTGATGAATGCGCTGA
TATTGATGTGGCTGCTGTGGATGTTGCTGTTGCTCTTGATGTTGCTGCTG
CTGCGCTGGAAAACTCGTCTCCGATTCCATCATCATCATGCCGCCGGTGG
CCTGCATCTCGTAATCCATCAAAGAGGCCTGCGTTCCAATTATTTGTGTG
GCAGGCAAGGAAAAGAAATCATTGCAGTACTGGGCGGCCAAGTCAGACTC
GTCGTAGCGACATCTCTTGGTGTACACCGGTTGGTCCGTGTCCAAATCCC
CGACAGGATTGTGACCGGGATTCAGGCGCTTCTTGCAGCGCAGGACTTCC
GGAGGCAGGACGACCGGCATCGGTTGTGCCGCGAGGTTATTGCCATCATT
GTTGTTGTTGTTGTTGTTGGCGTCGGTCATGAAGGTGACGGCGCGTGGAT
TGAACGGATCCATCGAAGGACGCAGCGCTCCAGTTTCGAAAGTGGCGGCC
GCCGACGACGACGGATCACCATGTGCCCAGCACTCGAAGTTCGTCAAAAC
CATGTCGACTGATAACT

BO09228.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PA 588 CG32428-RA 1..585 603..19 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:13:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..929 603..19 2925 100 Minus
CG32428-RA 1213 CG32428-RA 399..983 603..19 2925 100 Minus
CG32428-RC 1238 CG32428-RC 399..927 603..75 2645 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 14:13:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 270..603 1670 100 Plus
3L 28110227 3L 20470898..20471149 19..270 1260 100 Plus
Blast to na_te.dros performed on 2015-02-13 14:13:03 has no hits.

BO09228.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:10 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 18..603 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:06:55 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-PA 1..588 18..603 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 03:02:59 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..983 19..607 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:59:09 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 395..983 19..607 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:59:09 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20470898..20471148 19..269 100 <- Plus
3L 20472641..20472976 270..607 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 03:02:59 Download gff for BO09228.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463998..20464248 19..269 100 <- Plus
arm_3L 20465741..20466076 270..607 99   Plus

BO09228.complete Sequence

619 bp (619 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631435

> BO09228.complete
GAAGTTATCAGTCGACATGGTTTTGACGAACTTCGAGTGCTGGGCACATG
GTGATCCGTCGTCGTCGGCGGCCGCCACTTTCGAAACTGGAGCGCTGCGT
CCTTCGATGGATCCGTTCAATCCACGCGCCGTCACCTTCATGACCGACGC
CAACAACAACAACAACAACAATGATGGCAATAACCTCGCGGCACAACCGA
TGCCGGTCGTCCTGCCTCCGGAAGTCCTGCGCTGCAAGAAGCGCCTGAAT
CCCGGTCACAATCCTGTCGGGGATTTGGACACGGACCAACCGGTGTACAC
CAAGAGATGTCGCTACGACGAGTCTGACTTGGCCGCCCAGTACTGCAATG
ATTTCTTTTCCTTGCCTGCCACACAAATAATTGGAACGCAGGCCTCTTTG
ATGGATTACGAGATGCAGGCCACCGGCGGCATGATGATGATGGAATCGGA
GACGAGTTTTCCAGCGCAGCAGCAGCAACATCAAGAGCAACAGCAACATC
CACAGCAGCCACATCAATATCAGCGCATTCATCAGCATTATCAAGGTCAT
TTGCATCGCGCCAACCGTGATGTGAGTCGTTGCATGATGTCGCACATGAT
TGCAAGCTTTCTAGACCAT

BO09228.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 588 CG32428-PB 1..585 17..601 2925 100 Plus
CG32428-RA 588 CG32428-PA 1..585 17..601 2925 100 Plus
CG32428-RC 717 CG32428-PC 1..529 17..545 2645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-RB 1804 CG32428-RB 345..929 17..601 2925 100 Plus
CG32428-RA 1213 CG32428-RA 399..983 17..601 2925 100 Plus
CG32428-RC 1238 CG32428-RC 399..927 17..545 2645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20472641..20472974 350..17 1670 100 Minus
3L 28110227 3L 20470898..20471149 601..350 1260 100 Minus
Blast to na_te.dros performed on 2014-11-26 21:59:54 has no hits.

BO09228.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:51:19 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 1..588 17..602 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:06:43 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RB 319..907 13..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:14 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 399..983 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:51:19 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 371..959 13..601 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:02 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
CG32428-RA 399..983 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:02 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20470896..20471148 351..603 99 <- Minus
3L 20472641..20472974 17..350 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:14 Download gff for BO09228.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20463996..20464248 351..603 99 <- Minus
arm_3L 20465741..20466074 17..350 100   Minus

BO09228.pep Sequence

Translation from 16 to 619

> BO09228.pep
MVLTNFECWAHGDPSSSAAATFETGALRPSMDPFNPRAVTFMTDANNNNN
NNDGNNLAAQPMPVVLPPEVLRCKKRLNPGHNPVGDLDTDQPVYTKRCRY
DESDLAAQYCNDFFSLPATQIIGTQASLMDYEMQATGGMMMMESETSFPA
QQQQHQEQQQHPQQPHQYQRIHQHYQGHLHRANRDVSRCMMSHMIASFLD
H

BO09228.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32428-PB 195 CG32428-PB 1..195 1..195 1066 100 Plus
CG32428-PA 195 CG32428-PA 1..195 1..195 1066 100 Plus
CG32428-PC 238 CG32428-PC 1..176 1..176 961 100 Plus