Clone Sequence Records
BO09234.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-01-18
> BO09234.3prime
ATGGTCTAGAAAGCTTGCCTGGGCCTGCTCCGCCTTCTTTTTGGACCGAT
ACTTAAGTTTAGTTAGAAGCGATGACACCGGCGCGATAATGGTGAGTCCA
TAAACAATGCCGGTAATCAGCATCATGCCGGGAATAAAGTCAGTATCCAC
ATACTTGGTAAAGAATTTCGAATAGTAGCCCAGGTAAATGGCGCCCATTC
CCAGACTAAAGGTGACCAATCCAAATAGATTATGGCGGAAGCGAAGCTCT
GATGGAGGCATTACTTTCAGGGCGAACTTGGGCTGGAAATAGTTGACAAA
ACCGCCTACAATGCTGGCCGCGCAGAAAAAGGAAGCAGCTCCCCCCACTC
GGCCGTGCCAGGTGTTAAAGTGCACCTCCTTGCTGGAAAATTTACCCAGG
GAGCCCAACAGCACCATGGAGCCACCCACAATCTGCAGGATGGCGTGGAA
GCGCGACTTGTTTCGGTGCGACAGCCAACGGGTGAGCGGGTTCACTTTCG
AATGCGACATCATGGCCTGGGCGATAAGGACGTGGAATCCAGTCCCGGTC
ATAAACATATGCATGGCGGTATCCTTGAACTCCAGACTGCGCGCCAGTAT
GAAAAAGAAGACGGCCACCAGAAAGATCAGAATGTGGTTGATGCTATTCA
GCAGGCTGTGGATTTGCAGCCAGGCAGTGGCTTTCGTGTAACCCTCCGCC
ATGTCGACTGATAACT
BO09234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PA | 687 | CG10165-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
CG10165-PB | 687 | CG10165-RB | 1..684 | 702..19 | 3420 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1341 | 702..19 | 3420 | 100 | Minus |
CG10165-RC | 1308 | CG10165-RC | 155..838 | 702..19 | 3420 | 100 | Minus |
CG10165-RE | 854 | CG10165-RE | 72..755 | 702..19 | 3420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527380..19527706 | 19..345 | 1635 | 100 | Plus |
2L | 23513712 | 2L | 19527760..19527953 | 344..537 | 970 | 100 | Plus |
2L | 23513712 | 2L | 19528088..19528252 | 538..702 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:07:00 has no hits.
BO09234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:18 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:07 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 18..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:48 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 550..1243 | 19..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:22 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 62..755 | 19..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:22 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527380..19527705 | 19..344 | 100 | <- | Plus |
2L | 19527761..19527953 | 345..537 | 100 | <- | Plus |
2L | 19528088..19528262 | 538..712 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:48 Download gff for
BO09234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527380..19527705 | 19..344 | 100 | <- | Plus |
arm_2L | 19527761..19527953 | 345..537 | 100 | <- | Plus |
arm_2L | 19528088..19528262 | 538..712 | 97 | | Plus |
BO09234.5prime Sequence
716 bp (715 high quality bases) assembled on 2006-01-18
> BO09234.5prime
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
GCAAGCTTTCTAGACC
BO09234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PA | 687 | CG10165-RA | 1..684 | 17..700 | 3420 | 100 | Plus |
CG10165-PB | 687 | CG10165-RB | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:36:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1341 | 17..700 | 3420 | 100 | Plus |
CG10165-RC | 1308 | CG10165-RC | 155..838 | 17..700 | 3420 | 100 | Plus |
CG10165-RE | 854 | CG10165-RE | 72..755 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527380..19527706 | 700..374 | 1635 | 100 | Minus |
2L | 23513712 | 2L | 19527760..19527953 | 375..182 | 970 | 100 | Minus |
2L | 23513712 | 2L | 19528088..19528252 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 02:36:33 has no hits.
BO09234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:19 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:08 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-PB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:35 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 550..1243 | 7..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:34 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 62..755 | 7..700 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:34 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527380..19527705 | 375..700 | 100 | <- | Minus |
2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
2L | 19528088..19528262 | 7..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:35 Download gff for
BO09234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527380..19527705 | 375..700 | 100 | <- | Minus |
arm_2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
arm_2L | 19528088..19528262 | 7..181 | 97 | | Minus |
BO09234.complete Sequence
718 bp (718 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631436
> BO09234.complete
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
GCAAGCTTTCTAGACCAT
BO09234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 687 | CG10165-PD | 1..684 | 17..700 | 3420 | 100 | Plus |
CG10165-RC | 687 | CG10165-PC | 1..684 | 17..700 | 3420 | 100 | Plus |
CG10165-RE | 687 | CG10165-PE | 1..684 | 17..700 | 3420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-RD | 1440 | CG10165-RD | 658..1341 | 17..700 | 3420 | 100 | Plus |
CG10165-RC | 1308 | CG10165-RC | 155..838 | 17..700 | 3420 | 100 | Plus |
CG10165-RE | 854 | CG10165-RE | 72..755 | 17..700 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19527380..19527706 | 700..374 | 1635 | 100 | Minus |
2L | 23513712 | 2L | 19527760..19527953 | 375..182 | 970 | 100 | Minus |
2L | 23513712 | 2L | 19528088..19528252 | 181..17 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:21:24 has no hits.
BO09234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:54 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 1..687 | 17..701 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:33 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 522..1215 | 7..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:49 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 560..1243 | 17..702 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:54 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RB | 522..1215 | 7..700 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:30 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10165-RE | 72..755 | 17..702 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:30 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19527378..19527705 | 375..702 | 99 | <- | Minus |
2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
2L | 19528088..19528252 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:49 Download gff for
BO09234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19527378..19527705 | 375..702 | 99 | <- | Minus |
arm_2L | 19527761..19527953 | 182..374 | 100 | <- | Minus |
arm_2L | 19528088..19528252 | 17..181 | 100 | | Minus |
BO09234.pep Sequence
Translation from 16 to 718
> BO09234.pep
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQASFLDH
BO09234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10165-PD | 228 | CG10165-PD | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PC | 228 | CG10165-PC | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PE | 228 | CG10165-PE | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PB | 228 | CG10165-PB | 1..228 | 1..228 | 1178 | 100 | Plus |
CG10165-PA | 228 | CG10165-PA | 1..228 | 1..228 | 1178 | 100 | Plus |