Clone BO09234 Report

Search the DGRC for BO09234

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG10165-RA
Protein status:BO09234.pep: validated full length
Sequenced Size:718

Clone Sequence Records

BO09234.3prime Sequence

716 bp (715 high quality bases) assembled on 2006-01-18

> BO09234.3prime
ATGGTCTAGAAAGCTTGCCTGGGCCTGCTCCGCCTTCTTTTTGGACCGAT
ACTTAAGTTTAGTTAGAAGCGATGACACCGGCGCGATAATGGTGAGTCCA
TAAACAATGCCGGTAATCAGCATCATGCCGGGAATAAAGTCAGTATCCAC
ATACTTGGTAAAGAATTTCGAATAGTAGCCCAGGTAAATGGCGCCCATTC
CCAGACTAAAGGTGACCAATCCAAATAGATTATGGCGGAAGCGAAGCTCT
GATGGAGGCATTACTTTCAGGGCGAACTTGGGCTGGAAATAGTTGACAAA
ACCGCCTACAATGCTGGCCGCGCAGAAAAAGGAAGCAGCTCCCCCCACTC
GGCCGTGCCAGGTGTTAAAGTGCACCTCCTTGCTGGAAAATTTACCCAGG
GAGCCCAACAGCACCATGGAGCCACCCACAATCTGCAGGATGGCGTGGAA
GCGCGACTTGTTTCGGTGCGACAGCCAACGGGTGAGCGGGTTCACTTTCG
AATGCGACATCATGGCCTGGGCGATAAGGACGTGGAATCCAGTCCCGGTC
ATAAACATATGCATGGCGGTATCCTTGAACTCCAGACTGCGCGCCAGTAT
GAAAAAGAAGACGGCCACCAGAAAGATCAGAATGTGGTTGATGCTATTCA
GCAGGCTGTGGATTTGCAGCCAGGCAGTGGCTTTCGTGTAACCCTCCGCC
ATGTCGACTGATAACT

BO09234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PA 687 CG10165-RA 1..684 702..19 3420 100 Minus
CG10165-PB 687 CG10165-RB 1..684 702..19 3420 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1341 702..19 3420 100 Minus
CG10165-RC 1308 CG10165-RC 155..838 702..19 3420 100 Minus
CG10165-RE 854 CG10165-RE 72..755 702..19 3420 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527380..19527706 19..345 1635 100 Plus
2L 23513712 2L 19527760..19527953 344..537 970 100 Plus
2L 23513712 2L 19528088..19528252 538..702 825 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:07:00 has no hits.

BO09234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:18 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 18..702 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:07 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 18..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:48 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 550..1243 19..712 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:36:22 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 62..755 19..712 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:36:22 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19527380..19527705 19..344 100 <- Plus
2L 19527761..19527953 345..537 100 <- Plus
2L 19528088..19528262 538..712 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:48 Download gff for BO09234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527380..19527705 19..344 100 <- Plus
arm_2L 19527761..19527953 345..537 100 <- Plus
arm_2L 19528088..19528262 538..712 97   Plus

BO09234.5prime Sequence

716 bp (715 high quality bases) assembled on 2006-01-18

> BO09234.5prime
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
GCAAGCTTTCTAGACC

BO09234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PA 687 CG10165-RA 1..684 17..700 3420 100 Plus
CG10165-PB 687 CG10165-RB 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:36:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1341 17..700 3420 100 Plus
CG10165-RC 1308 CG10165-RC 155..838 17..700 3420 100 Plus
CG10165-RE 854 CG10165-RE 72..755 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527380..19527706 700..374 1635 100 Minus
2L 23513712 2L 19527760..19527953 375..182 970 100 Minus
2L 23513712 2L 19528088..19528252 181..17 825 100 Minus
Blast to na_te.dros performed on 2015-02-10 02:36:33 has no hits.

BO09234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:19 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..701 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:08 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-PB 1..687 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:35 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 550..1243 7..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:34 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 62..755 7..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:34 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19527380..19527705 375..700 100 <- Minus
2L 19527761..19527953 182..374 100 <- Minus
2L 19528088..19528262 7..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:35 Download gff for BO09234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527380..19527705 375..700 100 <- Minus
arm_2L 19527761..19527953 182..374 100 <- Minus
arm_2L 19528088..19528262 7..181 97   Minus

BO09234.complete Sequence

718 bp (718 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631436

> BO09234.complete
GAAGTTATCAGTCGACATGGCGGAGGGTTACACGAAAGCCACTGCCTGGC
TGCAAATCCACAGCCTGCTGAATAGCATCAACCACATTCTGATCTTTCTG
GTGGCCGTCTTCTTTTTCATACTGGCGCGCAGTCTGGAGTTCAAGGATAC
CGCCATGCATATGTTTATGACCGGGACTGGATTCCACGTCCTTATCGCCC
AGGCCATGATGTCGCATTCGAAAGTGAACCCGCTCACCCGTTGGCTGTCG
CACCGAAACAAGTCGCGCTTCCACGCCATCCTGCAGATTGTGGGTGGCTC
CATGGTGCTGTTGGGCTCCCTGGGTAAATTTTCCAGCAAGGAGGTGCACT
TTAACACCTGGCACGGCCGAGTGGGGGGAGCTGCTTCCTTTTTCTGCGCG
GCCAGCATTGTAGGCGGTTTTGTCAACTATTTCCAGCCCAAGTTCGCCCT
GAAAGTAATGCCTCCATCAGAGCTTCGCTTCCGCCATAATCTATTTGGAT
TGGTCACCTTTAGTCTGGGAATGGGCGCCATTTACCTGGGCTACTATTCG
AAATTCTTTACCAAGTATGTGGATACTGACTTTATTCCCGGCATGATGCT
GATTACCGGCATTGTTTATGGACTCACCATTATCGCGCCGGTGTCATCGC
TTCTAACTAAACTTAAGTATCGGTCCAAAAAGAAGGCGGAGCAGGCCCAG
GCAAGCTTTCTAGACCAT

BO09234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 687 CG10165-PD 1..684 17..700 3420 100 Plus
CG10165-RC 687 CG10165-PC 1..684 17..700 3420 100 Plus
CG10165-RE 687 CG10165-PE 1..684 17..700 3420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-RD 1440 CG10165-RD 658..1341 17..700 3420 100 Plus
CG10165-RC 1308 CG10165-RC 155..838 17..700 3420 100 Plus
CG10165-RE 854 CG10165-RE 72..755 17..700 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19527380..19527706 700..374 1635 100 Minus
2L 23513712 2L 19527760..19527953 375..182 970 100 Minus
2L 23513712 2L 19528088..19528252 181..17 825 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:21:24 has no hits.

BO09234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:54 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 1..687 17..701 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:20:33 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 522..1215 7..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:49 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 560..1243 17..702 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:54 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RB 522..1215 7..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:30 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
CG10165-RE 72..755 17..702 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:30 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19527378..19527705 375..702 99 <- Minus
2L 19527761..19527953 182..374 100 <- Minus
2L 19528088..19528252 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:49 Download gff for BO09234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19527378..19527705 375..702 99 <- Minus
arm_2L 19527761..19527953 182..374 100 <- Minus
arm_2L 19528088..19528252 17..181 100   Minus

BO09234.pep Sequence

Translation from 16 to 718

> BO09234.pep
MAEGYTKATAWLQIHSLLNSINHILIFLVAVFFFILARSLEFKDTAMHMF
MTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHAILQIVGGSMVLLG
SLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKVMPP
SELRFRHNLFGLVTFSLGMGAIYLGYYSKFFTKYVDTDFIPGMMLITGIV
YGLTIIAPVSSLLTKLKYRSKKKAEQAQASFLDH

BO09234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10165-PD 228 CG10165-PD 1..228 1..228 1178 100 Plus
CG10165-PC 228 CG10165-PC 1..228 1..228 1178 100 Plus
CG10165-PE 228 CG10165-PE 1..228 1..228 1178 100 Plus
CG10165-PB 228 CG10165-PB 1..228 1..228 1178 100 Plus
CG10165-PA 228 CG10165-PA 1..228 1..228 1178 100 Plus