Clone Sequence Records
BO09236.3prime Sequence
868 bp (837 high quality bases) assembled on 2006-01-18
> BO09236.3prime
ATGGTCTAGAAAGCTTGCTCTTTCCGGGAACAGGGACTCATAGCTGGGCG
GTAGATCCTTTGGCGTGGCGGGTTGCTGTTGCTGCTGGGTATCGTGCTCG
TGCAGGACGCTATCATCGTAGTGCACCGATGGTGGCAGCTCAATGGTGGG
CACATCCGATCTGACTCGACGCTGATTGAAGCGGGCAGCGGAGGCTTCGT
GCGCCCGTTGCTGCACCGTTATGCAGTTCCAATACTTCCAGCAGATCCAC
ACACAAAAACCCACGCCCACCATGGTAAAGATGAGCGAGGTCAGCGCCGA
TATAGCCACATTGGCCGTATCGATCTCCGGCACAATGGCGTCGTGAAAGC
AGGTGCCCTCGTCGCGGCACGGATACAGGCAATTGGTGATATTGTCCCGC
ACAAAATGACGCGAAATGCACGAGTACTGGTCGTTGGGCTCGCAAAGGAA
GTCTCCATTAAACTGGCACTCCGAGTGTGCCGTTAGCACCATGCGCAGCT
CCAGGGGATCGCCTAGTATATGACGCGATCGATCGATAAATATGTGCACG
TTGACGTCGCGATCACGCTGATCGAAGATCAGACGTCCCGCCGGGCCATC
AATGGAGATGTCCGTGCAAATGCGTTCGCTGGGCGAGCGATTGCCGCTGC
TGAACTGAATGTAGTCGATGCACTCCTTGGAAACGGGGTCGCGCCGAAAC
TTAAGCCGCGTAATGATAGTGTAAATGCCGCGTCGCGGTCGCTCGCTGGT
CACCACCCTAAACTGGCAATCGTACTTAATCTTGTTGGCCGTATGGCCGT
GGGGCAGTGTCAAATTCCACATCTGCGTCACGATCGCTCCGGAGGTGTCC
TCGAACTCCAGCCGCACA
BO09236.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-PA | 1008 | CG18870-RA | 156..1005 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:00:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 2937 | CG18870-RB | 336..1185 | 868..19 | 4250 | 100 | Minus |
| CG18870-RA | 2019 | CG18870-RA | 336..1185 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:00:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21615805..21616513 | 160..868 | 3545 | 100 | Plus |
| 2R | 25286936 | 2R | 21615597..21615737 | 19..159 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:00:29 has no hits.
BO09236.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:20 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-PA | 157..1008 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:10 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-PA | 157..1008 | 15..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:51:34 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 337..1190 | 14..867 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:32:43 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 337..1190 | 14..867 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:32:43 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21615592..21615737 | 14..159 | 98 | <- | Plus |
| 2R | 21615805..21616512 | 160..867 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:51:34 Download gff for
BO09236.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17503097..17503242 | 14..159 | 98 | <- | Plus |
| arm_2R | 17503310..17504017 | 160..867 | 100 | | Plus |
BO09236.5prime Sequence
855 bp (802 high quality bases) assembled on 2006-01-18
> BO09236.5prime
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAACCCTCC
GCTGC
BO09236.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-PA | 1008 | CG18870-RA | 1..839 | 17..855 | 4170 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 2937 | CG18870-RB | 177..1019 | 13..855 | 4200 | 99.9 | Plus |
| CG18870-RA | 2019 | CG18870-RA | 177..1019 | 13..855 | 4200 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21615830..21616587 | 855..98 | 3775 | 99.9 | Minus |
| 2R | 25286936 | 2R | 21616646..21616731 | 98..13 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:15:28 has no hits.
BO09236.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:21 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:11 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-PA | 1..839 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:47 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 177..1019 | 13..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:35:35 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 177..1019 | 13..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:35:35 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21615830..21616586 | 99..855 | 99 | <- | Minus |
| 2R | 21616646..21616731 | 13..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:47 Download gff for
BO09236.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17503335..17504091 | 99..855 | 99 | <- | Minus |
| arm_2R | 17504151..17504236 | 13..98 | 100 | | Minus |
BO09236.complete Sequence
1039 bp (1039 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631437
> BO09236.complete
GAAGTTATCAGTCGACATGTTGGTCAAGTGCTGCATCGGATTTGGGTCAC
TCTGGCCACTGGCCATGATGGTGGCCTTTTGCACTGCCTACAAGAACGTT
CGTCTCCAGGACAACATGTGCTCGGACAAACTGTTCTACACGCTGGCCAA
GCCGTTCCGTGGCGATCCGACTGTGCGGCTGGAGTTCGAGGACACCTCCG
GAGCGATCGTGACGCAGATGTGGAATTTGACACTGCCCCACGGCCATACG
GCCAACAAGATTAAGTACGATTGCCAGTTTAGGGTGGTGACCAGCGAGCG
ACCGCGACGCGGCATTTACACTATCATTACGCGGCTTAAGTTTCGGCGCG
ACCCCGTTTCCAAGGAGTGCATCGACTACATTCAGTTCAGCAGCGGCAAT
CGCTCGCCCAGCGAACGCATTTGCACGGACATCTCCATTGATGGCCCGGC
GGGACGTCTGATCTTCGATCAGCGTGATCGCGACGTCAACGTGCACATAT
TTATCGATCGATCGCGTCATATACTAGGCGATCCCCTGGAGCTGCGCATG
GTGCTAACGGCACACTCGGAGTGCCAGTTTAATGGAGACTTCCTTTGCGA
GCCCAACGACCAGTACTCGTGCATTTCGCGTCATTTTGTGCGGGACAATA
TCACCAATTGCCTGTATCCGTGCCGCGACGAGGGCACCTGCTTTCACGAC
GCCATTGTGCCGGAGATCGATACGGCCAATGTGGCTATATCGGCGCTGAC
CTCGCTCATCTTTACCATGGTGGGCGTGGGTTTTTGTGTGTGGATCTGCT
GGAAGTATTGGAACTGCATAACGGTGCAGCAACGGGCGCACGAAGCCTCC
GCTGCCCGCTTCAATCAGCGTCGAGTCAGATCGGATGTGCCCACCATTGA
GCTGCCACCATCGGTGCACTACGATGATAGCGTCCTGCACGAGCACGATA
CCCAGCAGCAACAGCAACCCGCCACGCCAAAGGATCTACCGCCCAGCTAT
GAGTCCCTGTTCCCGGAAAGAGCAAGCTTTCTAGACCAT
BO09236.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 1008 | CG18870-PB | 1..1005 | 17..1021 | 5025 | 100 | Plus |
| CG18870-RA | 1008 | CG18870-PA | 1..1005 | 17..1021 | 5025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-RB | 2937 | CG18870-RB | 177..1185 | 13..1021 | 5045 | 100 | Plus |
| CG18870-RA | 2019 | CG18870-RA | 177..1185 | 13..1021 | 5045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21615805..21616587 | 880..98 | 3915 | 100 | Minus |
| 2R | 25286936 | 2R | 21615597..21615737 | 1021..881 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 21616646..21616731 | 98..13 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:11:57 has no hits.
BO09236.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:19 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 1..1008 | 17..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:17 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 163..1176 | 13..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:47 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 186..1185 | 22..1023 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:19 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 137..1150 | 13..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:32 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18870-RA | 186..1185 | 22..1023 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:32 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21615805..21616586 | 99..880 | 100 | <- | Minus |
| 2R | 21616646..21616722 | 22..98 | 100 | | Minus |
| 2R | 21615595..21615737 | 881..1023 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:47 Download gff for
BO09236.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17504151..17504227 | 22..98 | 100 | | Minus |
| arm_2R | 17503310..17504091 | 99..880 | 100 | <- | Minus |
| arm_2R | 17503100..17503242 | 881..1023 | 98 | <- | Minus |
BO09236.pep Sequence
Translation from 16 to 1039
> BO09236.pep
MLVKCCIGFGSLWPLAMMVAFCTAYKNVRLQDNMCSDKLFYTLAKPFRGD
PTVRLEFEDTSGAIVTQMWNLTLPHGHTANKIKYDCQFRVVTSERPRRGI
YTIITRLKFRRDPVSKECIDYIQFSSGNRSPSERICTDISIDGPAGRLIF
DQRDRDVNVHIFIDRSRHILGDPLELRMVLTAHSECQFNGDFLCEPNDQY
SCISRHFVRDNITNCLYPCRDEGTCFHDAIVPEIDTANVAISALTSLIFT
MVGVGFCVWICWKYWNCITVQQRAHEASAARFNQRRVRSDVPTIELPPSV
HYDDSVLHEHDTQQQQQPATPKDLPPSYESLFPERASFLDH
BO09236.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18870-PB | 335 | CG18870-PB | 1..335 | 1..335 | 1824 | 100 | Plus |
| CG18870-PA | 335 | CG18870-PA | 1..335 | 1..335 | 1824 | 100 | Plus |
