Clone Sequence Records
BO09237.3prime Sequence
915 bp (781 high quality bases) assembled on 2006-01-18
> BO09237.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCGGCTGGCCATGTGGTTGGACAAGC
GGTGGCGGGTCCTATTGGCCACACAGGATATATCCATGTTGGCGAGTGAG
GAAGGCCTGTTGGCCAAAGTGCGGCGACGTAAGACACGTGGAGCAGGAGT
GCTCGGCTCCGGCGAGATGGAGCCCAACAGACGCCTGCCATTCGACGGCG
CAGCGGCAGTGGGCGTAAGTTGGCGCCTCTTCGACTCATATTCATCACTA
TCATATTCATCACTATCGTCATCGCTATCCGACACGTGTCTAGGCGGCGA
GACGTATCTAGGGCGCCAGGGACGACGTCCATTCGATGTGGACGGCTCAG
TGTTTTCTTGGTTATCAAGTGTCGATGCGGATGTGGATGTGGATGTGGAT
GTGGATGATGTCGCAGTTGCAGTAGCAGAGCGAAACGAGGTTACTACACT
TGAGAGAAATGTTGTTTGCGTTCCCTGTGATTCAAATGTGCGAGTTCCAC
GATCGGCTAAAGCGCGTGCCCCCGCAGAAGTAGATGGTTGATCATCGGAG
AGGGTCACCACGCGACTCTGCACTTTGGTATCGAACGCACGCTGAAAGAC
GGCATCATCGTCGGAGGAGCCGAAATCATCCCAATGGGAGGGTGATAGCT
TCTCTTGAATCTGATCACCATTTAGGTGACCTGGACGTGGGGCTTCGGCC
GAGTCGTCCATTGAGCCGGCGTCATCCGAGTCCGATTCGGCAACGGGCAC
TGCCTCCGGGCTGACGGCTGAGCAAACCTTGCAGACGTAGTTTTGGAGAG
TCTTCAACGTGCAAAGGTAATGTGACGGATTGGCGCCACATGAGGTGCAG
TACAGCAGCATGGCGGAAGTGTCGGCGCGACCAAAGACCGCAACGCACAC
GCGGCCGTACAATTG
BO09237.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9576-PA | 1563 | CG9576-RA | 680..1560 | 899..19 | 4380 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 1042..1939 | 915..19 | 4450 | 99.8 | Minus |
| Phf7-RB | 2211 | CG9576-RB | 1037..1934 | 915..19 | 4450 | 99.8 | Minus |
| Phf7-RA | 2221 | CG9576-RA | 758..1655 | 915..19 | 4450 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20160921..20161818 | 19..915 | 4425 | 99.8 | Plus |
Blast to na_te.dros performed 2015-02-10 18:02:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 510..568 | 425..370 | 108 | 67.8 | Minus |
BO09237.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:21 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 663..1563 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:12 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 663..1563 | 18..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:25 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 758..1655 | 19..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:12:02 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 758..1655 | 19..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:12:02 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20160921..20161818 | 19..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:25 Download gff for
BO09237.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20054954..20055851 | 19..915 | 99 | | Plus |
BO09237.5prime Sequence
855 bp (812 high quality bases) assembled on 2006-01-17
> BO09237.5prime
GAAGTTATCAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCG
AGCGGGACGAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATG
GTGCACCGCAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGA
AAAGAAATTGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGG
TCAACCGCTGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCC
AATATTTGGTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTG
CGGCGTCGATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGT
TCTGCCATCAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAAT
GACGAGGAATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCG
CTTCAGCGTGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGT
TCCACCGCAGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTC
AAGTGCCCGCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATAT
GGGCATCGCGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACG
CCTTTGCTGGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGC
GTTGCGGTCTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCAC
CTCATGTGGCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCC
AAAACTACGTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGGCAGTGCCC
GTTGC
BO09237.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9576-PA | 1563 | CG9576-RA | 1..839 | 17..855 | 4195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1218 | 16..855 | 4200 | 100 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1213 | 16..855 | 4200 | 100 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..934 | 16..855 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:12:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20161940..20162443 | 621..118 | 2520 | 100 | Minus |
| X | 23542271 | X | 20161642..20161875 | 855..622 | 1170 | 100 | Minus |
| X | 23542271 | X | 20162535..20162637 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:12:08 has no hits.
BO09237.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:22 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:13 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-PA | 1..839 | 17..855 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:42:42 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..934 | 9..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:18:29 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 91..934 | 9..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:18:29 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20161642..20161875 | 622..855 | 100 | <- | Minus |
| X | 20161940..20162442 | 119..621 | 100 | <- | Minus |
| X | 20162535..20162641 | 9..118 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:42:42 Download gff for
BO09237.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20055675..20055908 | 622..855 | 100 | <- | Minus |
| arm_X | 20055973..20056475 | 119..621 | 100 | <- | Minus |
| arm_X | 20056568..20056674 | 9..118 | 97 | | Minus |
BO09237.complete Sequence
1594 bp (1594 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631438
> BO09237.complete
GAAGTTATCAGTCGACATGGTGCAGATCTGCGTGCTGTGCCTCAGCGGCG
AGCGGGACGAGCTGATCTTCGGCACTGTGCACGTGGAGGGCAACATGATG
GTGCACCGCAACTGCTTGTACCTCAGCTCGAATCTCATCCAGCGTGGCGA
AAAGAAATTGAGCATCATGAACTTCCTCAAGGAGGACATCGAAGCGGAGG
TCAACCGCTGCCGTTTGCTTAAGTGTTGCTATTGCCGCCGCTTGGGCGCC
AATATTTGGTGCTGCAAGTCGGGGTGCCGTCGCACCTTCCATACCAAGTG
CGGCGTCGATAATCTGGCCCAGAACCAGTTCTGCGACACGTACAACTCGT
TCTGCCATCAGCATGTGCTGGTGCCTCGAAACCGTCCGGTGTTCAAGAAT
GACGAGGAATGTCTCCTATGCGCGGAGGACGTGGTTGCCAAGGGCGAGCG
CTTCAGCGTGGTGACCTGCCTATACGCGCCGTGCTGCCGCAATGGATGGT
TCCACCGCAGGTGCCTGCAGCGCTACGCCAACTCGTCCGGCTACTTCTTC
AAGTGCCCGCTGTGCAACAACACAGATGTGTTCCGCAGGGTGGCTTATAT
GGGCATCGCGGTGCTGGACCAAGACGCTTCCTGGGAGACCGAGCCGGACG
CCTTTGCTGGGCAGTACCGCCGCGATGTCAATTGTACGGCCGCGTTGTGC
GTTGCGGTCTCTGGTCGCGCCGACACTTCCGCCATGCTGCTGTACTGCAC
CTCATGTGGCGCCAATCCGTCACATTACCTTTGCACGTTGAAGACTCTCC
AAAACTACGTCTGCAAGGTTTGCTCAGCCGTCAGCCCGGAGGCAGTGCCC
GTTGCCGAATCGGACTCGGATGACGCCGGCTCAATGGACGACTCGGCCGA
AGCCCCACGTCCAGGTCACCTAAATGGTGATCAGATTCAAGAGAAGCTAT
CACCCTCCCATTGGGATGATTTCGGCTCCTCCGACGATGATGCCGTCTTT
CAGCGTGCGTTCGATACCAAAGTGCAGAGTCGCGTGGTGACCCTCTCCGA
TGATCAACCATCTACTTCTGCGGGGGCACGCGCTTTAGCCGATCGTGGAA
CTCGCACATTTGAATCACAGGGAACGCAAACAACATTTCTCTCAAGTGTA
GTAACCTCGTTTCGCTCTGCTACTGCAACTGCGACATCATCCACATCCAC
ATCCACATCCACATCCGCATCGACACTTGATAACCAAGAAAACACTGAGC
CGTCCACATCGAATGGACGTCGTCCCTGGCGCCCTAGATACGTCTCGCCG
CCTAGACACGTGTCGGATAGCGATGACGATAGTGATGAATATGATAGTGA
TGAATATGAGTCGAAGAGGCGCCAACTTACGCCCACTGCCGCTGCGCCGT
CGAATGGCAGGCGTCTGTTGGGCTCCATCTCGCCGGAGCCGAGCACTCCT
GCTCCACGTGTCTTACGTCGCCGCACTTTGGCCAACAGGCCTTCCTCACT
CGCCAACATGGATATATCCTGTGTGGCCAATAGGACCCGCCACCGCTTGT
CCAACCACATGGCCAGCCGCAAGGATGCAAGCTTTCTAGACCAT
BO09237.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:19:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 1563 | CG9576-PC | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| Phf7-RB | 1563 | CG9576-PB | 1..1560 | 17..1576 | 7800 | 100 | Plus |
| Phf7-RA | 1563 | CG9576-PA | 1..1560 | 17..1576 | 7800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-RC | 2505 | CG9576-RC | 379..1939 | 16..1576 | 7805 | 100 | Plus |
| Phf7-RB | 2211 | CG9576-RB | 374..1934 | 16..1576 | 7805 | 100 | Plus |
| Phf7-RA | 2221 | CG9576-RA | 95..1655 | 16..1576 | 7805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20160921..20161875 | 1576..622 | 4775 | 100 | Minus |
| X | 23542271 | X | 20161940..20162443 | 621..118 | 2520 | 100 | Minus |
| X | 23542271 | X | 20162535..20162637 | 118..16 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:19:08 has no hits.
BO09237.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:20 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 1..1563 | 17..1577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:18 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1654 | 9..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:47 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 96..1655 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:21 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9576-RA | 90..1654 | 9..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:33 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Phf7-RA | 96..1655 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:33 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20160919..20161875 | 622..1578 | 99 | <- | Minus |
| X | 20161940..20162442 | 119..621 | 100 | <- | Minus |
| X | 20162535..20162636 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:47 Download gff for
BO09237.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20054952..20055908 | 622..1578 | 99 | <- | Minus |
| arm_X | 20055973..20056475 | 119..621 | 100 | <- | Minus |
| arm_X | 20056568..20056669 | 17..118 | 100 | | Minus |
BO09237.pep Sequence
Translation from 16 to 1594
> BO09237.pep
MVQICVLCLSGERDELIFGTVHVEGNMMVHRNCLYLSSNLIQRGEKKLSI
MNFLKEDIEAEVNRCRLLKCCYCRRLGANIWCCKSGCRRTFHTKCGVDNL
AQNQFCDTYNSFCHQHVLVPRNRPVFKNDEECLLCAEDVVAKGERFSVVT
CLYAPCCRNGWFHRRCLQRYANSSGYFFKCPLCNNTDVFRRVAYMGIAVL
DQDASWETEPDAFAGQYRRDVNCTAALCVAVSGRADTSAMLLYCTSCGAN
PSHYLCTLKTLQNYVCKVCSAVSPEAVPVAESDSDDAGSMDDSAEAPRPG
HLNGDQIQEKLSPSHWDDFGSSDDDAVFQRAFDTKVQSRVVTLSDDQPST
SAGARALADRGTRTFESQGTQTTFLSSVVTSFRSATATATSSTSTSTSTS
ASTLDNQENTEPSTSNGRRPWRPRYVSPPRHVSDSDDDSDEYDSDEYESK
RRQLTPTAAAPSNGRRLLGSISPEPSTPAPRVLRRRTLANRPSSLANMDI
SCVANRTRHRLSNHMASRKDASFLDH
BO09237.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Phf7-PC | 520 | CG9576-PC | 1..520 | 1..520 | 2782 | 100 | Plus |
| Phf7-PB | 520 | CG9576-PB | 1..520 | 1..520 | 2782 | 100 | Plus |
| Phf7-PA | 520 | CG9576-PA | 1..520 | 1..520 | 2782 | 100 | Plus |
| pie-PB | 582 | CG5354-PB | 9..360 | 5..358 | 421 | 28.8 | Plus |
| pie-PA | 582 | CG5354-PA | 9..360 | 5..358 | 421 | 28.8 | Plus |
