Clone BO09240 Report

Search the DGRC for BO09240

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptMtch-RA
Protein status:BO09240.pep: validated full length
Sequenced Size:982

Clone Sequence Records

BO09240.3prime Sequence

891 bp (844 high quality bases) assembled on 2006-01-18

> BO09240.3prime
ATGGTCTAGAAAGCTTGCCTGGTAACGCGCCAGCTTAGGCAAGGGCGCGA
ATGAGGTGGCTATTACTGGAGAACTGATGGATTGTGACCGCCAGAAAAGG
GAGCTGCCGCGCTTAAGCTCCCCGCGAACCTGCAAATCATTCCAACAGTC
TACCCAGTTCCTGTAGGCCGGCATAATTGGCGGTTGGGCAGCCATCAGGC
GTGAGCCACTTACCGCTGAGCAGGTGGACACCACTTGCAGTGGATACAGT
AAACTAGATACGGCAAACTGTGTGAATCCGGAATTGTATTGCCTGCCTAA
CTTGTCCTTGATGATATATTTGTTAAGGATGTAGATCGTGGAGCTGCTGA
GCACTAGGCAGGCCAAATCGCCCAGCAGCTTTGGCACAAGACCGGCGAAA
AATCCCGCTATTCCCTCAGACTTCCAAATCTCGGCCACGGAGCCCACAAT
AGAGGTGTACAAGGTCTCGCGGCCGACAAACTGCGCCATCATGCGCAACG
AGATTACGTGAAAAGGATGCGAGGCCACGACTCCGCTCACCATCAAAACA
ATATCCCGCTTCAGACTTTTCTTGAACTGGACGTACAATTCCTCATCACT
AAGCTGCGAGTCGTCCTTATTCTCCTCTGGCTGCTCCAGGCCCAGTTGAT
CGGCCACTCGGTCGCTTACCACCATGGCCACCAGAGAACCCACCAATTTA
GGAGCTAGACCGCGGTAGCAACCGTAGAAGCCGTCGATCCGCCGAATGTG
GCCAGCGTACTGAAAGATGTTCGGCAACTTCATGATCGGCTTGCCCAGTA
TCGACTTGCCGGGCAGAGGAGCGATTGGTTCGTAACCCAGCTGGATGAAG
GGTTTGGATATTCGAACGGATGAAGGGCGGCGCTGACGCCC

BO09240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6851-PB 951 Mtch-RB 119..948 848..19 4150 100 Minus
CG6851-PA 951 Mtch-RA 119..948 848..19 4150 100 Minus
CG6851-PC 951 Mtch-RC 119..948 848..19 4150 100 Minus
CG6851-PB 951 Mtch-RB 75..108 891..858 170 100 Minus
CG6851-PA 951 Mtch-RA 75..108 891..858 170 100 Minus
CG6851-PC 951 Mtch-RC 75..108 891..858 170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:20:06
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 208..1081 891..19 4315 99.7 Minus
Mtch-RF 1408 CG6851-RF 220..1093 891..19 4315 99.7 Minus
Mtch-RE 1386 CG6851-RE 198..1071 891..19 4315 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185866 586..87 2500 100 Minus
3L 28110227 3L 185134..185304 756..586 855 100 Minus
3L 28110227 3L 184938..185074 891..756 605 97.8 Minus
3L 28110227 3L 185925..185995 89..19 355 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:20:04 has no hits.

BO09240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:25 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-PC 75..951 18..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:17 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6851-PC 75..951 18..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:55 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 198..1075 13..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:08:01 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 198..1075 13..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:08:01 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 184938..185074 756..891 97 -> Minus
3L 185135..185303 587..755 100 -> Minus
3L 185367..185864 89..586 100 -> Minus
3L 185926..185999 13..88 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:55 Download gff for BO09240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 184938..185074 756..891 97 -> Minus
arm_3L 185135..185303 587..755 100 -> Minus
arm_3L 185367..185864 89..586 100 -> Minus
arm_3L 185926..185999 13..88 96   Minus

BO09240.5prime Sequence

873 bp (799 high quality bases) assembled on 2006-01-18

> BO09240.5prime
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCCATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCG

BO09240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6851-PB 951 Mtch-RB 1..857 17..873 4260 99.8 Plus
CG6851-PA 951 Mtch-RA 1..857 17..873 4260 99.8 Plus
CG6851-PC 951 Mtch-RC 1..857 17..873 4260 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:50
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 134..990 17..873 4270 99.9 Plus
Mtch-RF 1408 CG6851-RF 146..1002 17..873 4270 99.9 Plus
Mtch-RE 1386 CG6851-RE 124..980 17..873 4270 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185843 397..873 2370 99.8 Plus
3L 28110227 3L 184864..185074 17..227 1055 100 Plus
3L 28110227 3L 185134..185304 227..397 855 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:37:48 has no hits.

BO09240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:26 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-PC 1..857 17..873 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:19 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6851-PC 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:27 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 122..980 14..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:42 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 122..980 14..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:42 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 184862..185074 14..227 99 -> Plus
3L 185135..185303 228..396 100 -> Plus
3L 185367..185843 397..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:27 Download gff for BO09240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 184862..185074 14..227 99 -> Plus
arm_3L 185135..185303 228..396 100 -> Plus
arm_3L 185367..185843 397..873 99   Plus

BO09240.complete Sequence

982 bp (982 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631439

> BO09240.complete
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACA
ATCCATCAGTTCTCCAGTAATAGCCACCTCATTCGCGCCCTTGCCTAAGC
TGGCGCGTTACCAGGCAAGCTTTCTAGACCAT

BO09240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:52
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 951 CG6851-PG 1..948 17..964 4740 100 Plus
Mtch-RF 951 CG6851-PF 1..948 17..964 4740 100 Plus
Mtch-RE 951 CG6851-PE 1..948 17..964 4740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-RG 1396 CG6851-RG 134..1081 17..964 4740 100 Plus
Mtch-RF 1408 CG6851-RF 146..1093 17..964 4740 100 Plus
Mtch-RE 1386 CG6851-RE 124..1071 17..964 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 185367..185866 397..896 2500 100 Plus
3L 28110227 3L 184864..185074 17..227 1055 100 Plus
3L 28110227 3L 185134..185304 227..397 855 100 Plus
3L 28110227 3L 185925..185995 894..964 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:56:51 has no hits.

BO09240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:07 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 1..951 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:59 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 120..1073 14..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:08 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 124..1071 17..966 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:08 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RC 120..1073 14..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:50 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
Mtch-RE 124..1071 17..966 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:50 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
3L 184864..185074 17..227 100 -> Plus
3L 185135..185303 228..396 100 -> Plus
3L 185367..185864 397..894 100 -> Plus
3L 185926..185995 895..966 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:08 Download gff for BO09240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 185135..185303 228..396 100 -> Plus
arm_3L 184864..185074 17..227 100 -> Plus
arm_3L 185367..185864 397..894 100 -> Plus
arm_3L 185926..185995 895..966 97   Plus

BO09240.pep Sequence

Translation from 16 to 982

> BO09240.pep
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQASFLDH

BO09240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
Mtch-PG 316 CG6851-PG 1..316 1..316 1623 100 Plus
Mtch-PF 316 CG6851-PF 1..316 1..316 1623 100 Plus
Mtch-PE 316 CG6851-PE 1..316 1..316 1623 100 Plus
Mtch-PC 316 CG6851-PC 1..316 1..316 1623 100 Plus
Mtch-PA 316 CG6851-PA 1..316 1..316 1623 100 Plus