Clone Sequence Records
BO09240.3prime Sequence
891 bp (844 high quality bases) assembled on 2006-01-18
> BO09240.3prime
ATGGTCTAGAAAGCTTGCCTGGTAACGCGCCAGCTTAGGCAAGGGCGCGA
ATGAGGTGGCTATTACTGGAGAACTGATGGATTGTGACCGCCAGAAAAGG
GAGCTGCCGCGCTTAAGCTCCCCGCGAACCTGCAAATCATTCCAACAGTC
TACCCAGTTCCTGTAGGCCGGCATAATTGGCGGTTGGGCAGCCATCAGGC
GTGAGCCACTTACCGCTGAGCAGGTGGACACCACTTGCAGTGGATACAGT
AAACTAGATACGGCAAACTGTGTGAATCCGGAATTGTATTGCCTGCCTAA
CTTGTCCTTGATGATATATTTGTTAAGGATGTAGATCGTGGAGCTGCTGA
GCACTAGGCAGGCCAAATCGCCCAGCAGCTTTGGCACAAGACCGGCGAAA
AATCCCGCTATTCCCTCAGACTTCCAAATCTCGGCCACGGAGCCCACAAT
AGAGGTGTACAAGGTCTCGCGGCCGACAAACTGCGCCATCATGCGCAACG
AGATTACGTGAAAAGGATGCGAGGCCACGACTCCGCTCACCATCAAAACA
ATATCCCGCTTCAGACTTTTCTTGAACTGGACGTACAATTCCTCATCACT
AAGCTGCGAGTCGTCCTTATTCTCCTCTGGCTGCTCCAGGCCCAGTTGAT
CGGCCACTCGGTCGCTTACCACCATGGCCACCAGAGAACCCACCAATTTA
GGAGCTAGACCGCGGTAGCAACCGTAGAAGCCGTCGATCCGCCGAATGTG
GCCAGCGTACTGAAAGATGTTCGGCAACTTCATGATCGGCTTGCCCAGTA
TCGACTTGCCGGGCAGAGGAGCGATTGGTTCGTAACCCAGCTGGATGAAG
GGTTTGGATATTCGAACGGATGAAGGGCGGCGCTGACGCCC
BO09240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6851-PB | 951 | Mtch-RB | 119..948 | 848..19 | 4150 | 100 | Minus |
CG6851-PA | 951 | Mtch-RA | 119..948 | 848..19 | 4150 | 100 | Minus |
CG6851-PC | 951 | Mtch-RC | 119..948 | 848..19 | 4150 | 100 | Minus |
CG6851-PB | 951 | Mtch-RB | 75..108 | 891..858 | 170 | 100 | Minus |
CG6851-PA | 951 | Mtch-RA | 75..108 | 891..858 | 170 | 100 | Minus |
CG6851-PC | 951 | Mtch-RC | 75..108 | 891..858 | 170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:20:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 208..1081 | 891..19 | 4315 | 99.7 | Minus |
Mtch-RF | 1408 | CG6851-RF | 220..1093 | 891..19 | 4315 | 99.7 | Minus |
Mtch-RE | 1386 | CG6851-RE | 198..1071 | 891..19 | 4315 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185866 | 586..87 | 2500 | 100 | Minus |
3L | 28110227 | 3L | 185134..185304 | 756..586 | 855 | 100 | Minus |
3L | 28110227 | 3L | 184938..185074 | 891..756 | 605 | 97.8 | Minus |
3L | 28110227 | 3L | 185925..185995 | 89..19 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:20:04 has no hits.
BO09240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:25 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-PC | 75..951 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:17 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6851-PC | 75..951 | 18..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:55 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 198..1075 | 13..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:08:01 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 198..1075 | 13..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:08:01 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184938..185074 | 756..891 | 97 | -> | Minus |
3L | 185135..185303 | 587..755 | 100 | -> | Minus |
3L | 185367..185864 | 89..586 | 100 | -> | Minus |
3L | 185926..185999 | 13..88 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:55 Download gff for
BO09240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 184938..185074 | 756..891 | 97 | -> | Minus |
arm_3L | 185135..185303 | 587..755 | 100 | -> | Minus |
arm_3L | 185367..185864 | 89..586 | 100 | -> | Minus |
arm_3L | 185926..185999 | 13..88 | 96 | | Minus |
BO09240.5prime Sequence
873 bp (799 high quality bases) assembled on 2006-01-18
> BO09240.5prime
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCCATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCG
BO09240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6851-PB | 951 | Mtch-RB | 1..857 | 17..873 | 4260 | 99.8 | Plus |
CG6851-PA | 951 | Mtch-RA | 1..857 | 17..873 | 4260 | 99.8 | Plus |
CG6851-PC | 951 | Mtch-RC | 1..857 | 17..873 | 4260 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:37:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 134..990 | 17..873 | 4270 | 99.9 | Plus |
Mtch-RF | 1408 | CG6851-RF | 146..1002 | 17..873 | 4270 | 99.9 | Plus |
Mtch-RE | 1386 | CG6851-RE | 124..980 | 17..873 | 4270 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:37:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185843 | 397..873 | 2370 | 99.8 | Plus |
3L | 28110227 | 3L | 184864..185074 | 17..227 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 185134..185304 | 227..397 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:37:48 has no hits.
BO09240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:26 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-PC | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:19 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6851-PC | 1..857 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:49:27 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 122..980 | 14..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:40:42 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 122..980 | 14..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:40:42 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184862..185074 | 14..227 | 99 | -> | Plus |
3L | 185135..185303 | 228..396 | 100 | -> | Plus |
3L | 185367..185843 | 397..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:49:27 Download gff for
BO09240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 184862..185074 | 14..227 | 99 | -> | Plus |
arm_3L | 185135..185303 | 228..396 | 100 | -> | Plus |
arm_3L | 185367..185843 | 397..873 | 99 | | Plus |
BO09240.complete Sequence
982 bp (982 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631439
> BO09240.complete
GAAGTTATCAGTCGACATGGCCGGCTTTCCCGAGCACGCCCGCGCAGAGG
ATACGGAGGTTAATGTTTGGATCCGCTTTGGTCTTAGGCTGGGCGTCAGC
GCCGCCCTTCATCCGTTCGAATATTCCAAAACCCTCATCCAGCTGGGTTA
CGAACCAATCGCTCCTCTGCCCGGCAAGTCGATACTGGGCAAGCCGATCA
TGAAGTTGCCGAACATCTTTCAGTACGCTGGCCACATTCGGCGGATCGAC
GGCTTCTACGGTTGCTACCGCGGTCTAGCTCCTAAATTGGTGGGTTCTCT
GGTGGCCATGGTGGTAAGCGACCGAGTGGCCGATCAACTGGGCCTGGAGC
AGCCAGAGGAGAATAAGGACGACTCGCAGCTTAGTGATGAGGAATTGTAC
GTCCAGTTCAAGAAAAGTCTGAAGCGGGATATTGTTTTGATGGTGAGCGG
AGTCGTGGCCTCGCATCCTTTTCACGTAATCTCGTTGCGCATGATGGCGC
AGTTTGTCGGCCGCGAGACCTTGTACACCTCTATTGTGGGCTCCGTGGCC
GAGATTTGGAAGTCTGAGGGAATAGCGGGATTTTTCGCCGGTCTTGTGCC
AAAGCTGCTGGGCGATTTGGCCTGCCTAGTGCTCAGCAGCTCCACGATCT
ACATCCTTAACAAATATATCATCAAGGACAAGTTAGGCAGGCAATACAAT
TCCGGATTCACACAGTTTGCCGTATCTAGTTTACTGTATCCACTGCAAGT
GGTGTCCACCTGCTCAGCGGTAAGTGGCTCACGCCTGATGGCTGCCCAAC
CGCCAATTATGCCGGCCTACAGGAACTGGGTAGACTGTTGGAATGATTTG
CAGGTTCGCGGGGAGCTTAAGCGCGGCAGCTCCCTTTTCTGGCGGTCACA
ATCCATCAGTTCTCCAGTAATAGCCACCTCATTCGCGCCCTTGCCTAAGC
TGGCGCGTTACCAGGCAAGCTTTCTAGACCAT
BO09240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 951 | CG6851-PG | 1..948 | 17..964 | 4740 | 100 | Plus |
Mtch-RF | 951 | CG6851-PF | 1..948 | 17..964 | 4740 | 100 | Plus |
Mtch-RE | 951 | CG6851-PE | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-RG | 1396 | CG6851-RG | 134..1081 | 17..964 | 4740 | 100 | Plus |
Mtch-RF | 1408 | CG6851-RF | 146..1093 | 17..964 | 4740 | 100 | Plus |
Mtch-RE | 1386 | CG6851-RE | 124..1071 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 185367..185866 | 397..896 | 2500 | 100 | Plus |
3L | 28110227 | 3L | 184864..185074 | 17..227 | 1055 | 100 | Plus |
3L | 28110227 | 3L | 185134..185304 | 227..397 | 855 | 100 | Plus |
3L | 28110227 | 3L | 185925..185995 | 894..964 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:56:51 has no hits.
BO09240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:07 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:59 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 120..1073 | 14..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:08 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 124..1071 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:08 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RC | 120..1073 | 14..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:34:50 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mtch-RE | 124..1071 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:34:50 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 184864..185074 | 17..227 | 100 | -> | Plus |
3L | 185135..185303 | 228..396 | 100 | -> | Plus |
3L | 185367..185864 | 397..894 | 100 | -> | Plus |
3L | 185926..185995 | 895..966 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:08 Download gff for
BO09240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 185135..185303 | 228..396 | 100 | -> | Plus |
arm_3L | 184864..185074 | 17..227 | 100 | -> | Plus |
arm_3L | 185367..185864 | 397..894 | 100 | -> | Plus |
arm_3L | 185926..185995 | 895..966 | 97 | | Plus |
BO09240.pep Sequence
Translation from 16 to 982
> BO09240.pep
MAGFPEHARAEDTEVNVWIRFGLRLGVSAALHPFEYSKTLIQLGYEPIAP
LPGKSILGKPIMKLPNIFQYAGHIRRIDGFYGCYRGLAPKLVGSLVAMVV
SDRVADQLGLEQPEENKDDSQLSDEELYVQFKKSLKRDIVLMVSGVVASH
PFHVISLRMMAQFVGRETLYTSIVGSVAEIWKSEGIAGFFAGLVPKLLGD
LACLVLSSSTIYILNKYIIKDKLGRQYNSGFTQFAVSSLLYPLQVVSTCS
AVSGSRLMAAQPPIMPAYRNWVDCWNDLQVRGELKRGSSLFWRSQSISSP
VIATSFAPLPKLARYQASFLDH
BO09240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mtch-PG | 316 | CG6851-PG | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PF | 316 | CG6851-PF | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PE | 316 | CG6851-PE | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PC | 316 | CG6851-PC | 1..316 | 1..316 | 1623 | 100 | Plus |
Mtch-PA | 316 | CG6851-PA | 1..316 | 1..316 | 1623 | 100 | Plus |