Clone Sequence Records
BO09242.3prime Sequence
923 bp (797 high quality bases) assembled on 2006-01-18
> BO09242.3prime
ATGGTCTAGAAAGCTTGCTAAGGCATCAGATATTGAGGTACCGAATCCAA
AGGTCTGTTTGATGCTATGCCAGTAATATCGGTACCAGTTTGTCTTCATC
GCATCAAATTCGGACGCGGGTATCCCGGTCTGCTTGAGCGACATCATTGT
GCTGGATGAAGTTTCTTCCAGCTCTATGACAACGTTTGAGTAGTGACCAG
ATGTCCAGTTTTTCAGACGCCAGCTCTGCTGTATTTTTTTTTCAGGGACG
AGCTCTTCGAATTTTCCGAGCACATTGCCTCCGTAAAGAATAAATTCTCC
ACCGCGCACGGCATCTACTTTGGCAGGTGCCCTCGTAAAGGCAGTGACCA
TTTCTGGCTTTGTGAGAGCGTTGTAAAGGTCATTGGCGCTGCAGTGAAAT
TCTTCGGTCATCGAGAGAGTGCGAACGTCCAGTTTACAGCCGATGCCAGA
GTTCTTCAGCCTAGGAGCCGCCACCGAGGAGTTTAAAGCGATATTTTGGG
CTGCATTACGGGTATTGTTGGCATCCTTAAAATTCGCCACAGTATTTCCC
GCTCCGGCCTCGTCGCCCTTCTTTGGTAGGATAAGGTTCTTGGAGTACTC
CTCCTTCAACTCTCGGATGTAGGAAGCCAGTTGCTGCCGCACGCGGTCTC
GTCCCACGTTGTACATGAACTGTTTCAGGGTCTCCGACTCGTCGTTGGAC
TCGTCGATTGTCACCGTGATCTCTACGTCGGCTAGTTCGTTCTCCTCGGA
GAGATTGGGAATGGTTAACTTGCCCTTGTGGATCAGCTTGCTGTTCTTTA
GGAGCTTTCCAGACCACTTGAGCACCAGCTCCCACTCGTAGAAAAATATG
AGCTTGCCCTTGCGATTGTTCACGGTGGCCTCCCCGGAGCATTTGTCCCC
GGAGTCCACGGCACACTCAATGT
BO09242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PA | 1065 | CG1416-RA | 158..1062 | 923..19 | 4500 | 99.8 | Minus |
CG1416-PB | 1065 | CG1416-RB | 158..1062 | 923..19 | 4500 | 99.8 | Minus |
CG1416-PC | 1065 | CG1416-RC | 158..1062 | 923..19 | 4500 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 258..1162 | 923..19 | 4510 | 99.9 | Minus |
CG1416-RB | 1500 | CG1416-RB | 301..1205 | 923..19 | 4510 | 99.9 | Minus |
CG1416-RA | 1644 | CG1416-RA | 360..1264 | 923..19 | 4510 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758451..21759078 | 923..296 | 3125 | 99.8 | Minus |
2L | 23513712 | 2L | 21760480..21760620 | 159..19 | 705 | 100 | Minus |
2L | 23513712 | 2L | 21759231..21759366 | 295..160 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:02:39 has no hits.
BO09242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:30 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PA | 158..1065 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:24 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PC | 158..1065 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:21 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 360..1268 | 14..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:01 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 360..1268 | 14..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:01 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758451..21759078 | 296..923 | 99 | -> | Minus |
2L | 21759231..21759366 | 160..295 | 100 | -> | Minus |
2L | 21760480..21760624 | 14..159 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:21 Download gff for
BO09242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758451..21759078 | 296..923 | 99 | -> | Minus |
arm_2L | 21759231..21759366 | 160..295 | 100 | -> | Minus |
arm_2L | 21760480..21760624 | 14..159 | 98 | | Minus |
BO09242.5prime Sequence
927 bp (839 high quality bases) assembled on 2006-01-18
> BO09242.5prime
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAATACAGCAGAGCTGGCGTCTGNAAAACTGGACATCTGGT
CACTACTCAAACGTTGTCATAGAGCTG
BO09242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PA | 1065 | CG1416-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
CG1416-PB | 1065 | CG1416-RB | 1..846 | 17..862 | 4230 | 100 | Plus |
CG1416-PC | 1065 | CG1416-RC | 1..846 | 17..862 | 4230 | 100 | Plus |
CG1416-PA | 1065 | CG1416-RA | 840..912 | 855..927 | 346 | 98.6 | Plus |
CG1416-PB | 1065 | CG1416-RB | 840..912 | 855..927 | 346 | 98.6 | Plus |
CG1416-PC | 1065 | CG1416-RC | 840..912 | 855..927 | 346 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:36:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 101..1012 | 17..927 | 4524 | 99.8 | Plus |
CG1416-RB | 1500 | CG1416-RB | 144..1055 | 17..927 | 4524 | 99.8 | Plus |
CG1416-RA | 1644 | CG1416-RA | 203..1114 | 17..927 | 4524 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:35:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758440..21759078 | 163..801 | 3195 | 100 | Plus |
2L | 23513712 | 2L | 21758212..21758360 | 17..165 | 745 | 100 | Plus |
2L | 23513712 | 2L | 21759231..21759357 | 802..927 | 574 | 98.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 02:35:58 has no hits.
BO09242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:30 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PA | 1..912 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:25 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-PC | 1..912 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:32 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 199..1114 | 10..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:30 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 199..1114 | 10..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:30 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758208..21758359 | 10..164 | 98 | -> | Plus |
2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
2L | 21759231..21759357 | 802..927 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:32 Download gff for
BO09242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758208..21758359 | 10..164 | 98 | -> | Plus |
arm_2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
arm_2L | 21759231..21759357 | 802..927 | 98 | | Plus |
BO09242.complete Sequence
1096 bp (1096 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631440
> BO09242.complete
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGG
TCACTACTCAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAA
TGATGTCGCTCAAGCAGACCGGGATACCCGCGTCCGAATTTGATGCGATG
AAGACAAACTGGTACCGATATTACTGGCATAGCATCAAACAGACCTTTGG
ATTCGGTACCTCAATATCTGATGCCTTAGCAAGCTTTCTAGACCAT
BO09242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1065 | CG1416-PC | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG1416-RB | 1065 | CG1416-PB | 1..1062 | 17..1078 | 5310 | 100 | Plus |
CG1416-RA | 1065 | CG1416-PA | 1..1062 | 17..1078 | 5310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-RC | 1457 | CG1416-RC | 101..1162 | 17..1078 | 5310 | 100 | Plus |
CG1416-RB | 1500 | CG1416-RB | 144..1205 | 17..1078 | 5310 | 100 | Plus |
CG1416-RA | 1644 | CG1416-RA | 203..1264 | 17..1078 | 5310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 21758440..21759078 | 163..801 | 3195 | 100 | Plus |
2L | 23513712 | 2L | 21758212..21758360 | 17..165 | 745 | 100 | Plus |
2L | 23513712 | 2L | 21760480..21760620 | 938..1078 | 705 | 100 | Plus |
2L | 23513712 | 2L | 21759231..21759366 | 802..937 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:00:02 has no hits.
BO09242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:15 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 1..1065 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:09 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 105..1174 | 10..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:47 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 203..1264 | 17..1080 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:15 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RC | 105..1174 | 10..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:55 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1416-RA | 203..1264 | 17..1080 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:55 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 21758212..21758359 | 17..164 | 100 | -> | Plus |
2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
2L | 21759231..21759366 | 802..937 | 100 | -> | Plus |
2L | 21760480..21760620 | 938..1080 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:47 Download gff for
BO09242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 21758212..21758359 | 17..164 | 100 | -> | Plus |
arm_2L | 21758442..21759078 | 165..801 | 100 | -> | Plus |
arm_2L | 21759231..21759366 | 802..937 | 100 | -> | Plus |
arm_2L | 21760480..21760620 | 938..1080 | 98 | | Plus |
BO09242.pep Sequence
Translation from 16 to 1096
> BO09242.pep
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDALASFLDH
BO09242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1416-PC | 354 | CG1416-PC | 1..354 | 1..354 | 1870 | 100 | Plus |
CG1416-PB | 354 | CG1416-PB | 1..354 | 1..354 | 1870 | 100 | Plus |
CG1416-PA | 354 | CG1416-PA | 1..354 | 1..354 | 1870 | 100 | Plus |