Clone BO09242 Report

Search the DGRC for BO09242

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG1416-RA
Protein status:BO09242.pep: validated full length
Sequenced Size:1096

Clone Sequence Records

BO09242.3prime Sequence

923 bp (797 high quality bases) assembled on 2006-01-18

> BO09242.3prime
ATGGTCTAGAAAGCTTGCTAAGGCATCAGATATTGAGGTACCGAATCCAA
AGGTCTGTTTGATGCTATGCCAGTAATATCGGTACCAGTTTGTCTTCATC
GCATCAAATTCGGACGCGGGTATCCCGGTCTGCTTGAGCGACATCATTGT
GCTGGATGAAGTTTCTTCCAGCTCTATGACAACGTTTGAGTAGTGACCAG
ATGTCCAGTTTTTCAGACGCCAGCTCTGCTGTATTTTTTTTTCAGGGACG
AGCTCTTCGAATTTTCCGAGCACATTGCCTCCGTAAAGAATAAATTCTCC
ACCGCGCACGGCATCTACTTTGGCAGGTGCCCTCGTAAAGGCAGTGACCA
TTTCTGGCTTTGTGAGAGCGTTGTAAAGGTCATTGGCGCTGCAGTGAAAT
TCTTCGGTCATCGAGAGAGTGCGAACGTCCAGTTTACAGCCGATGCCAGA
GTTCTTCAGCCTAGGAGCCGCCACCGAGGAGTTTAAAGCGATATTTTGGG
CTGCATTACGGGTATTGTTGGCATCCTTAAAATTCGCCACAGTATTTCCC
GCTCCGGCCTCGTCGCCCTTCTTTGGTAGGATAAGGTTCTTGGAGTACTC
CTCCTTCAACTCTCGGATGTAGGAAGCCAGTTGCTGCCGCACGCGGTCTC
GTCCCACGTTGTACATGAACTGTTTCAGGGTCTCCGACTCGTCGTTGGAC
TCGTCGATTGTCACCGTGATCTCTACGTCGGCTAGTTCGTTCTCCTCGGA
GAGATTGGGAATGGTTAACTTGCCCTTGTGGATCAGCTTGCTGTTCTTTA
GGAGCTTTCCAGACCACTTGAGCACCAGCTCCCACTCGTAGAAAAATATG
AGCTTGCCCTTGCGATTGTTCACGGTGGCCTCCCCGGAGCATTTGTCCCC
GGAGTCCACGGCACACTCAATGT

BO09242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PA 1065 CG1416-RA 158..1062 923..19 4500 99.8 Minus
CG1416-PB 1065 CG1416-RB 158..1062 923..19 4500 99.8 Minus
CG1416-PC 1065 CG1416-RC 158..1062 923..19 4500 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 258..1162 923..19 4510 99.9 Minus
CG1416-RB 1500 CG1416-RB 301..1205 923..19 4510 99.9 Minus
CG1416-RA 1644 CG1416-RA 360..1264 923..19 4510 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:02:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758451..21759078 923..296 3125 99.8 Minus
2L 23513712 2L 21760480..21760620 159..19 705 100 Minus
2L 23513712 2L 21759231..21759366 295..160 680 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:02:39 has no hits.

BO09242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:30 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PA 158..1065 15..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:24 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PC 158..1065 15..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:21 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 360..1268 14..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:01 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 360..1268 14..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:01 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 21758451..21759078 296..923 99 -> Minus
2L 21759231..21759366 160..295 100 -> Minus
2L 21760480..21760624 14..159 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:21 Download gff for BO09242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758451..21759078 296..923 99 -> Minus
arm_2L 21759231..21759366 160..295 100 -> Minus
arm_2L 21760480..21760624 14..159 98   Minus

BO09242.5prime Sequence

927 bp (839 high quality bases) assembled on 2006-01-18

> BO09242.5prime
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAATACAGCAGAGCTGGCGTCTGNAAAACTGGACATCTGGT
CACTACTCAAACGTTGTCATAGAGCTG

BO09242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PA 1065 CG1416-RA 1..846 17..862 4230 100 Plus
CG1416-PB 1065 CG1416-RB 1..846 17..862 4230 100 Plus
CG1416-PC 1065 CG1416-RC 1..846 17..862 4230 100 Plus
CG1416-PA 1065 CG1416-RA 840..912 855..927 346 98.6 Plus
CG1416-PB 1065 CG1416-RB 840..912 855..927 346 98.6 Plus
CG1416-PC 1065 CG1416-RC 840..912 855..927 346 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 02:36:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 101..1012 17..927 4524 99.8 Plus
CG1416-RB 1500 CG1416-RB 144..1055 17..927 4524 99.8 Plus
CG1416-RA 1644 CG1416-RA 203..1114 17..927 4524 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 02:35:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 163..801 3195 100 Plus
2L 23513712 2L 21758212..21758360 17..165 745 100 Plus
2L 23513712 2L 21759231..21759357 802..927 574 98.4 Plus
Blast to na_te.dros performed on 2015-02-10 02:35:58 has no hits.

BO09242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:30 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PA 1..912 17..927 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:25 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-PC 1..912 17..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:39:32 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 199..1114 10..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:09:30 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 199..1114 10..927 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:09:30 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21758208..21758359 10..164 98 -> Plus
2L 21758442..21759078 165..801 100 -> Plus
2L 21759231..21759357 802..927 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:39:32 Download gff for BO09242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758208..21758359 10..164 98 -> Plus
arm_2L 21758442..21759078 165..801 100 -> Plus
arm_2L 21759231..21759357 802..927 98   Plus

BO09242.complete Sequence

1096 bp (1096 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631440

> BO09242.complete
GAAGTTATCAGTCGACATGGCCAAGTGGGGAGAAGGAGATCCGCGCTGGA
TTGTGGAGGAGCGGCCCGACGCCACCAACGTGAACAACTGGCACTGGACG
GAAAAGAACGCCACGCCATGGTCCAAGGACCGCCTGCATCAGCTTTTTCA
GGATTTCAAAATAGGGCAAAGCGACATTGAGTGTGCCGTGGACTCCGTGG
ACAAATGCTCCGGGGAGGCCACCGTGAACAATCGCAAGGGCAAGCTCATA
TTTTTCTACGAGTGGGAGCTGGTGCTCAAGTGGTCTGGAAAGCTCCTAAA
GAACAGCAAGCTGATCCACAAGGGCAAGTTAACCATTCCCAATCTCTCCG
AGGAGAACGAACTAGCCGACGTAGAGATCACGGTGACAATCGACGAGTCC
AACGACGAGTCGGAGACCCTGAAACAGTTCATGTACAACGTGGGACGAGA
CCGCGTGCGGCAGCAACTGGCTTCCTACATCCGAGAGTTGAAGGAGGAGT
ACTCCAAGAACCTTATCCTACCAAAGAAGGGCGACGAGGCCGGAGCGGGA
AATACTGTGGCGAATTTTAAGGATGCCAACAATACCCGTAATGCAGCCCA
AAATATCGCTTTAAACTCCTCGGTGGCGGCTCCTAGGCTGAAGAACTCTG
GCATCGGCTGTAAACTGGACGTTCGCACTCTCTCGATGACCGAAGAATTT
CACTGCAGCGCCAATGACCTTTACAACGCTCTCACAAAGCCAGAAATGGT
CACTGCCTTTACGAGGGCACCTGCCAAAGTAGATGCCGTGCGCGGTGGAG
AATTTATTCTTTACGGAGGCAATGTGCTCGGAAAATTCGAAGAGCTCGTC
CCTGAAAAAAAAATACAGCAGAGCTGGCGTCTGAAAAACTGGACATCTGG
TCACTACTCAAACGTTGTCATAGAGCTGGAAGAAACTTCATCCAGCACAA
TGATGTCGCTCAAGCAGACCGGGATACCCGCGTCCGAATTTGATGCGATG
AAGACAAACTGGTACCGATATTACTGGCATAGCATCAAACAGACCTTTGG
ATTCGGTACCTCAATATCTGATGCCTTAGCAAGCTTTCTAGACCAT

BO09242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1065 CG1416-PC 1..1062 17..1078 5310 100 Plus
CG1416-RB 1065 CG1416-PB 1..1062 17..1078 5310 100 Plus
CG1416-RA 1065 CG1416-PA 1..1062 17..1078 5310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-RC 1457 CG1416-RC 101..1162 17..1078 5310 100 Plus
CG1416-RB 1500 CG1416-RB 144..1205 17..1078 5310 100 Plus
CG1416-RA 1644 CG1416-RA 203..1264 17..1078 5310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21758440..21759078 163..801 3195 100 Plus
2L 23513712 2L 21758212..21758360 17..165 745 100 Plus
2L 23513712 2L 21760480..21760620 938..1078 705 100 Plus
2L 23513712 2L 21759231..21759366 802..937 680 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:00:02 has no hits.

BO09242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:15 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 1..1065 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:09 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 105..1174 10..1083 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:49:47 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 203..1264 17..1080 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:15 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RC 105..1174 10..1083 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:55 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
CG1416-RA 203..1264 17..1080 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:55 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
2L 21758212..21758359 17..164 100 -> Plus
2L 21758442..21759078 165..801 100 -> Plus
2L 21759231..21759366 802..937 100 -> Plus
2L 21760480..21760620 938..1080 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:49:47 Download gff for BO09242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21758212..21758359 17..164 100 -> Plus
arm_2L 21758442..21759078 165..801 100 -> Plus
arm_2L 21759231..21759366 802..937 100 -> Plus
arm_2L 21760480..21760620 938..1080 98   Plus

BO09242.pep Sequence

Translation from 16 to 1096

> BO09242.pep
MAKWGEGDPRWIVEERPDATNVNNWHWTEKNATPWSKDRLHQLFQDFKIG
QSDIECAVDSVDKCSGEATVNNRKGKLIFFYEWELVLKWSGKLLKNSKLI
HKGKLTIPNLSEENELADVEITVTIDESNDESETLKQFMYNVGRDRVRQQ
LASYIRELKEEYSKNLILPKKGDEAGAGNTVANFKDANNTRNAAQNIALN
SSVAAPRLKNSGIGCKLDVRTLSMTEEFHCSANDLYNALTKPEMVTAFTR
APAKVDAVRGGEFILYGGNVLGKFEELVPEKKIQQSWRLKNWTSGHYSNV
VIELEETSSSTMMSLKQTGIPASEFDAMKTNWYRYYWHSIKQTFGFGTSI
SDALASFLDH

BO09242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1416-PC 354 CG1416-PC 1..354 1..354 1870 100 Plus
CG1416-PB 354 CG1416-PB 1..354 1..354 1870 100 Plus
CG1416-PA 354 CG1416-PA 1..354 1..354 1870 100 Plus