Clone Sequence Records
BO09243.3prime Sequence
864 bp (855 high quality bases) assembled on 2006-01-18
> BO09243.3prime
ATGGTCTAGAAAGCTTGCAAGCTTTTGCGGCACATCTTTGCTGACGGCTC
CCGTTCGCTCGTGATTGACCACAAACTTCTTGGCGCCCGACAATCCCTGC
TTGTTAATGTAGAAGCTCTTTTGGGCCAGCGGCGAACCACCGCCATCGGA
ATCAACCACCAGGCGATTCAGGAAAGTGGCAGCCGTCTTGGCACCACTAT
CGCAGGAGGATGACTCTATGCTAATGGTGGAGCATCCACCGATCGATGAG
GTCTCACTTTTGGCATCGTCCATCAGAGTGGCATCATCCACCAGGTCGTT
GACCAGCACCTGCGTACTGGACGATGCGGTGGACACTATGGAAGAGGTGC
GACTGCGGCAGGAGTGCGTCTCCGATTCGGGTATCGAGATACCCTCGTCG
ATGCTTTGGCTCTGACTGCCGCCGGAAACGAGGCACATGGCTGCCTCCAG
ATTGGGACCGCTGCCAACACCTCCGGGCGAGGCGGAAACAGGCGACGGAC
ATCCCGAGCTGCTGCTATTGTTATTTATCCCATTTCCGCTCACCGAATTG
CTTGTGCACAGCTTCGAGATGAACAACTTGGGCGTGAGGCGGCCGTCAAA
GGTTCCGGAATCGGGACTGGGACACACCGACGAGGGCGATTGGCACACCG
GTGAGGAGCCGCGACTTTCCGTGAATATCTTCTTCACAGGCGGAGGTGAG
TACACGCTCCAGTTGCTGCCCTGAGTGGGGTTATCGTCCAGCTCAAATTT
TCTCTTCACGGGTCCCAGCTGGGATGGCCTCATGGCTATGGGAGACATCG
ACCGCCTGGTGGCGAAAGTACGTCTCGTCGGCGACGGGGAGTATGGTAAT
CTCATGCCCGCGCG
BO09243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PA | 1521 | CG4497-RA | 673..1518 | 864..19 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:50:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 922..1767 | 864..19 | 4230 | 100 | Minus |
| CG4497-RA | 2566 | CG4497-RA | 747..1592 | 864..19 | 4230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:50:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7191405..7192052 | 19..666 | 3240 | 100 | Plus |
| 2L | 23513712 | 2L | 7192492..7192691 | 665..864 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:50:17 has no hits.
BO09243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:31 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 673..1521 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:26 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 673..1521 | 15..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:56 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 747..1596 | 14..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:31 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 747..1596 | 14..864 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:31 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7191401..7192050 | 14..664 | 99 | <- | Plus |
| 2L | 7192492..7192691 | 665..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:56 Download gff for
BO09243.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7191401..7192050 | 14..664 | 99 | <- | Plus |
| arm_2L | 7192492..7192691 | 665..864 | 100 | | Plus |
BO09243.5prime Sequence
955 bp (859 high quality bases) assembled on 2006-01-17
> BO09243.5prime
GAAGTTATCAGTCGACATGGAATCGGAGACGAAAGCGAGCGCCGAGGAGA
AGCAGCAGGAGAACCCCTCGACAGTGCCCATGGACACGCTGGATCCGCCG
CCACCGTGTGGCAGCTCCAAGACCCTCAAACGCTGCCTCAGTGTGCCAAT
AATCCGGACTCCGCCGGCGGGCAAATCGGGAAAGACGCCGATGACCACAC
GCGCAGCCGCAGCGGCTGCTCTGGCGGCCAAGGAGCACGAGCAGACGCCC
AAGAAGAGCCAACAGGTGGTGGATATCCAAATGCCGAATGCCCCATCCAT
CGATTGCTTCGGCAAGAACATACACATACGATCGCAGCCCAATTCCAGGG
AGGTTTCACCGGCTCCCGTCTTCAATATATTCACACCTCGAGCCAGAAGG
TATTCGGCCAGCTATAGTCCACTGACCACGGCAGCCAATGGAGCCACTCT
CTGTCTCACGCCTCGAGTTTCGCAGCTGCGGCAGGAGGAATGCGCAGATC
TAAACAGCCGGGAGGTTAACCATGAGCGGGAAGTTCATCGGGAAATACAA
ATTTCGCAGAGCTGGGAGGATCTCACGCTGGTGGCCGAGAACTGGTCGTG
CAAATCGGACGAGTTCTCCAATCCCCTGCAGGTCAGCCTGCCACCCACCG
GCACCACCAGCTGCTCCAGTCCCAGTCCCACAAACAATCGCGCGGGCATG
AGATTACCATACTCCCCGTCGCCGACGAGACGTACTTTCGCCACCAGGCG
GTCGATGTCTCCCATAGCCATGAGGCCATCCCAGCTGGGACCCGTGAAGA
GAAAATTTGAGCTGGACGATAACCCCACTCAGGGCAGCAACTGGAGCGTG
TACTCACCTCCGCCTGTGAAGAGGATATTCACGGAAAGTCGCGGCTCCTC
ACCGGTGTGCCAATCGCCCTCGTCGGTGTGTCCCAGTCCCGATCCGGGAC
CTTTG
BO09243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PA | 1521 | CG4497-RA | 1..927 | 17..943 | 4610 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:19:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 250..1189 | 17..955 | 4645 | 99.7 | Plus |
| CG4497-RA | 2566 | CG4497-RA | 75..1014 | 17..955 | 4645 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7192492..7193363 | 888..17 | 4345 | 99.9 | Minus |
| 2L | 23513712 | 2L | 7191996..7192052 | 943..887 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:19:48 has no hits.
BO09243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:32 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:27 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-PA | 1..940 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:51 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1014 | 17..955 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:55 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1014 | 17..955 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:55 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7191983..7192050 | 889..955 | 97 | <- | Minus |
| 2L | 7192492..7193363 | 17..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:51 Download gff for
BO09243.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7191983..7192050 | 889..955 | 97 | <- | Minus |
| arm_2L | 7192492..7193363 | 17..888 | 99 | | Minus |
BO09243.complete Sequence
1552 bp (1552 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631441
> BO09243.complete
GAAGTTATCAGTCGACATGGAATCGGAGACGAAAGCGAGCGCCGAGGAGA
AGCAGCAGGAGAACCCCTCGACAGTGCCCATGGACACGCTGGATCCGCCG
CCACCGTGTGGCAGCTCCAAGACCCTCAAACGCTGCCTCAGTGTGCCAAT
AATCCGGACTCCGCCGGCGGGCAAATCGGGAAAGACGCCGATGACCACAC
GCGCAGCCGCAGCGGCTGCTCTGGCGGCCAAGGAGCACGAGCAGACGCCC
AAGAAGAGCCAACAGGTGGTGGATATCCAAATGCCGAATGCCCCATCCAT
CGATTGCTTCGGCAAGAACATACACATACGATCGCAGCCCAATTCCAGGG
AGGTTTCACCGGCTCCCGTCTTCAATATATTCACACCTCGAGCCAGAAGG
TATTCGGCCAGCTATAGTCCACTGACCACGGCAGCCAATGGAGCCACTCT
CTGTCTCACGCCTCGAGTTTCGCAGCTGCGGCAGGAGGAATGCGCAGATC
TAAACAGCCGGGAGGTTAACCATGAGCGGGAAGTTCATCGGGAAATACAA
ATTTCGCAGAGCTGGGAGGATCTCACGCTGGTGGCCGAGAACTGGTCGTG
CAAATCGGACGAGTTCTCCAATCCCCTGCAGGTCAGCCTGCCACCCACCG
GCACCACCAGCTGCTCCAGTCCCAGTCCCACAAACAATCGCGCGGGCATG
AGATTACCATACTCCCCGTCGCCGACGAGACGTACTTTCGCCACCAGGCG
GTCGATGTCTCCCATAGCCATGAGGCCATCCCAGCTGGGACCCGTGAAGA
GAAAATTTGAGCTGGACGATAACCCCACTCAGGGCAGCAACTGGAGCGTG
TACTCACCTCCGCCTGTGAAGAAGATATTCACGGAAAGTCGCGGCTCCTC
ACCGGTGTGCCAATCGCCCTCGTCGGTGTGTCCCAGTCCCGATTCCGGAA
CCTTTGACGGCCGCCTCACGCCCAAGTTGTTCATCTCGAAGCTGTGCACA
AGCAATTCGGTGAGCGGAAATGGGATAAATAACAATAGCAGCAGCTCGGG
ATGTCCGTCGCCTGTTTCCGCCTCGCCCGGAGGTGTTGGCAGCGGTCCCA
ATCTGGAGGCAGCCATGTGCCTCGTTTCCGGCGGCAGTCAGAGCCAAAGC
ATCGACGAGGGTATCTCGATACCCGAATCGGAGACGCACTCCTGCCGCAG
TCGCACCTCTTCCATAGTGTCCACCGCATCGTCCAGTACGCAGGTGCTGG
TCAACGACCTGGTGGATGATGCCACTCTGATGGACGATGCCAAAAGTGAG
ACCTCATCGATCGGTGGATGCTCCACCATTAGCATAGAGTCATCCTCCTG
CGATAGTGGTGCCAAGACGGCTGCCACTTTCCTGAATCGCCTGGTGGTTG
ATTCCGATGGCGGTGGTTCGCCGCTGGCCCAAAAGAGCTTCTACATTAAC
AAGCAGGGATTGTCGGGCGCCAAGAAGTTTGTGGTCAATCACGAGCGAAC
GGGAGCCGTCAGCAAAGATGTGCCGCAAAAGCTTGCAAGCTTTCTAGACC
AT
BO09243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:39:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 1521 | CG4497-PB | 1..1518 | 17..1534 | 7590 | 100 | Plus |
| CG4497-RA | 1521 | CG4497-PA | 1..1518 | 17..1534 | 7590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:39:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-RB | 2741 | CG4497-RB | 250..1767 | 17..1534 | 7590 | 100 | Plus |
| CG4497-RA | 2566 | CG4497-RA | 75..1592 | 17..1534 | 7590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:39:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7192492..7193363 | 888..17 | 4360 | 100 | Minus |
| 2L | 23513712 | 2L | 7191405..7192052 | 1534..887 | 3240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:39:32 has no hits.
BO09243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:21 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 1..1521 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:20 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 74..1594 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:21 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1592 | 17..1536 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:22 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 74..1594 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:39 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4497-RA | 75..1592 | 17..1536 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:39 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7191403..7192050 | 889..1536 | 99 | <- | Minus |
| 2L | 7192492..7193363 | 17..888 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:21 Download gff for
BO09243.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7191403..7192050 | 889..1536 | 99 | <- | Minus |
| arm_2L | 7192492..7193363 | 17..888 | 100 | | Minus |
BO09243.pep Sequence
Translation from 16 to 1552
> BO09243.pep
MESETKASAEEKQQENPSTVPMDTLDPPPPCGSSKTLKRCLSVPIIRTPP
AGKSGKTPMTTRAAAAAALAAKEHEQTPKKSQQVVDIQMPNAPSIDCFGK
NIHIRSQPNSREVSPAPVFNIFTPRARRYSASYSPLTTAANGATLCLTPR
VSQLRQEECADLNSREVNHEREVHREIQISQSWEDLTLVAENWSCKSDEF
SNPLQVSLPPTGTTSCSSPSPTNNRAGMRLPYSPSPTRRTFATRRSMSPI
AMRPSQLGPVKRKFELDDNPTQGSNWSVYSPPPVKKIFTESRGSSPVCQS
PSSVCPSPDSGTFDGRLTPKLFISKLCTSNSVSGNGINNNSSSSGCPSPV
SASPGGVGSGPNLEAAMCLVSGGSQSQSIDEGISIPESETHSCRSRTSSI
VSTASSSTQVLVNDLVDDATLMDDAKSETSSIGGCSTISIESSSCDSGAK
TAATFLNRLVVDSDGGGSPLAQKSFYINKQGLSGAKKFVVNHERTGAVSK
DVPQKLASFLDH
BO09243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4497-PB | 506 | CG4497-PB | 1..506 | 1..506 | 2618 | 100 | Plus |
| CG4497-PA | 506 | CG4497-PA | 1..506 | 1..506 | 2618 | 100 | Plus |
