Clone Sequence Records
BO09244.3prime Sequence
913 bp (859 high quality bases) assembled on 2006-01-18
> BO09244.3prime
ATGGTCTAGAAAGCTTGCAACGGACAACGATACGAAACTGTTGTATTGCG
TGATGTTGCGTTTGAGTATGTCGGCGCAGGGTCCCAACACGCGTTCAAAT
CTCGCCCGGTCCAGTTTGACGCATTTGAGCGGCCCACGAGCTACAACAGT
CGCTGCACGTGGTCGGTCCAAAAGCAGAGCAATCTCGCCAAAGTAATCGC
TGCTACCCAGACGGCCCACCTCGGCGGGATCCTCGCCCTCAGAACGCTGC
TGCAGCACCACCGCACAGCCCTCGAGGATGATGTAGAAGTCATCGCCAGC
TGCTCCCTGCTTGACAATCGTCTCACCGTCATCGAAGGAGCACGTCTCCA
GGGAATCGGCCACTGTGAGGCGCTCCCATTTGTCCAAGCTCTCCAGAATG
GACACGCGCGATAAGAACTCCTCGTACATCTTGCGCTTGCGGATGGTCGA
GCCCATCAGAATGCGGCGGTAGGAGTCGCGGTCGATTCCCCACAGCTTCA
CATCGGTTTTGGCGCGCACGGTGGCGGCGCGAGGAGTGCCATAGATGAGG
GCCAGTTCACCAAAGCTGCCGCCCTCGCTGATGGTGGTCACTAGTTCGGA
GTTGACGAAAACATCGACCTCTCCCACATCAATCACGTAGAAGTTGTCGC
CTTCATCGCCCTGCTGGATGATATTCTCGCCGGCGATGTGATTCACAGGG
AACATGGCATCAAATATGTCGGATCTCTCGCTCTCGTCCAAGTGAGCGAA
CAGGACGTTCTTGGCAATCGCCTTGGACAGGGCATTCATCGTCTTGTAGT
CCTTGGGCACCACCTTCTTAACATAGTTGGTGGCATCCTCTTCGGTTACG
GGTTCGGCGGAGATTCCGCCTCGCCTGCGAACCGGTGGAGCAGCTGTTTG
TGGCATCGGGCTG
BO09244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3263-PC | 1131 | Pka-R1-RC | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PA | 1131 | Pka-R1-RA | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PE | 960 | Pka-R1-RE | 63..957 | 913..19 | 4475 | 100 | Minus |
CG3263-PD | 966 | Pka-R1-RD | 69..963 | 913..19 | 4475 | 100 | Minus |
CG3263-PG | 1131 | Pka-R1-RG | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PH | 1131 | Pka-R1-RH | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PI | 1131 | Pka-R1-RI | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PJ | 1131 | Pka-R1-RJ | 234..1128 | 913..19 | 4475 | 100 | Minus |
CG3263-PB | 891 | Pka-R1-RB | 1..888 | 906..19 | 4440 | 100 | Minus |
CG3263-PF | 891 | Pka-R1-RF | 1..888 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-RU | 3570 | CG42341-RU | 711..1605 | 913..19 | 4475 | 100 | Minus |
Pka-R1-RT | 3240 | CG42341-RT | 381..1275 | 913..19 | 4475 | 100 | Minus |
Pka-R1-RS | 3068 | CG42341-RS | 209..1103 | 913..19 | 4475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20833283..20833658 | 612..237 | 1880 | 100 | Minus |
3L | 28110227 | 3L | 20832905..20833207 | 913..611 | 1515 | 100 | Minus |
3L | 28110227 | 3L | 20833731..20833869 | 239..101 | 695 | 100 | Minus |
3L | 28110227 | 3L | 20834000..20834083 | 102..19 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:05:01 has no hits.
BO09244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:33 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3263-PJ | 234..1131 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:29 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3263-PA | 234..1131 | 15..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:54 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RS | 209..1107 | 14..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:21 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RS | 209..1107 | 14..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:21 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20833733..20833869 | 101..237 | 100 | -> | Minus |
3L | 20834002..20834087 | 14..100 | 97 | | Minus |
3L | 20832905..20833205 | 613..913 | 100 | -> | Minus |
3L | 20833283..20833657 | 238..612 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:54 Download gff for
BO09244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20826005..20826305 | 613..913 | 100 | -> | Minus |
arm_3L | 20826383..20826757 | 238..612 | 100 | -> | Minus |
arm_3L | 20826833..20826969 | 101..237 | 100 | -> | Minus |
arm_3L | 20827102..20827187 | 14..100 | 97 | | Minus |
BO09244.5prime Sequence
938 bp (838 high quality bases) assembled on 2006-01-17
> BO09244.5prime
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTN
CAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
GGTGGTGCTGCAGCAGCGTTCTGAGGGCGAAGATCCCG
BO09244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3263-PC | 1131 | Pka-R1-RC | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PA | 1131 | Pka-R1-RA | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PG | 1131 | Pka-R1-RG | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PH | 1131 | Pka-R1-RH | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PI | 1131 | Pka-R1-RI | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PJ | 1131 | Pka-R1-RJ | 1..922 | 17..938 | 4541 | 99.6 | Plus |
CG3263-PE | 960 | Pka-R1-RE | 3..751 | 190..938 | 3676 | 99.5 | Plus |
CG3263-PD | 966 | Pka-R1-RD | 9..757 | 190..938 | 3676 | 99.5 | Plus |
CG3263-PB | 891 | Pka-R1-RB | 1..682 | 257..938 | 3341 | 99.5 | Plus |
CG3263-PF | 891 | Pka-R1-RF | 1..682 | 257..938 | 3341 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-RU | 3570 | CG42341-RU | 476..1399 | 15..938 | 4579 | 99.7 | Plus |
Pka-R1-RT | 3240 | CG42341-RT | 146..1069 | 15..938 | 4579 | 99.7 | Plus |
Pka-R1-RP | 3577 | CG42341-RP | 483..1406 | 15..938 | 4579 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20833283..20833658 | 551..926 | 1854 | 99.5 | Plus |
3L | 28110227 | 3L | 20832845..20833207 | 190..552 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 20816658..20816834 | 15..191 | 885 | 100 | Plus |
U | 3151297 | U | 973046..973165 | 66..191 | 415 | 90.5 | Plus |
Y | 3667352 | Y | 3286046..3286204 | 191..15 | 395 | 84.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:30:58 has no hits.
BO09244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:35 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3263-PA | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:31 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3263-PG | 1..922 | 17..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:06 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 483..1406 | 15..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:53 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 483..1406 | 15..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:53 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20816658..20816833 | 15..190 | 100 | -> | Plus |
3L | 20832846..20833205 | 191..550 | 100 | -> | Plus |
3L | 20833283..20833661 | 551..930 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:06 Download gff for
BO09244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20809758..20809933 | 15..190 | 100 | -> | Plus |
arm_3L | 20825946..20826305 | 191..550 | 100 | -> | Plus |
arm_3L | 20826383..20826761 | 551..930 | 98 | | Plus |
BO09244.complete Sequence
1162 bp (1162 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631442
> BO09244.complete
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTC
AAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
GGTGGTGCTGCAGCAGCGTTCTGAGGGCGAGGATCCCGCCGAGGTGGGCC
GTCTGGGTAGCAGCGATTACTTTGGCGAGATTGCTCTGCTTTTGGACCGA
CCACGTGCAGCGACTGTTGTAGCTCGTGGGCCGCTCAAATGCGTCAAACT
GGACCGGGCGAGATTTGAACGCGTGTTGGGACCCTGCGCCGACATACTCA
AACGCAACATCACGCAATACAACAGTTTCGTATCGTTGTCCGTTGCAAGC
TTTCTAGACCAT
BO09244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-RU | 1131 | CG42341-PU | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Pka-R1-RT | 1131 | CG42341-PT | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Pka-R1-RP | 1131 | CG42341-PP | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-RU | 3570 | CG42341-RU | 476..1605 | 15..1144 | 5650 | 100 | Plus |
Pka-R1-RT | 3240 | CG42341-RT | 146..1275 | 15..1144 | 5650 | 100 | Plus |
Pka-R1-RP | 3577 | CG42341-RP | 483..1612 | 15..1144 | 5650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20833283..20833658 | 551..926 | 1880 | 100 | Plus |
3L | 28110227 | 3L | 20832845..20833207 | 190..552 | 1815 | 100 | Plus |
3L | 28110227 | 3L | 20816658..20816834 | 15..191 | 885 | 100 | Plus |
3L | 28110227 | 3L | 20833731..20833869 | 924..1062 | 695 | 100 | Plus |
3L | 28110227 | 3L | 20834000..20834083 | 1061..1144 | 420 | 100 | Plus |
U | 3151297 | U | 973046..973165 | 66..191 | 415 | 90.5 | Plus |
Y | 3667352 | Y | 3286046..3286204 | 191..15 | 395 | 84.2 | Minus |
Y | 3667352 | Y | 3290393..3290551 | 191..15 | 395 | 84.2 | Minus |
Y | 3667352 | Y | 3294658..3294816 | 191..15 | 395 | 84.2 | Minus |
Y | 3667352 | Y | 3365375..3365533 | 191..15 | 395 | 84.2 | Minus |
Ymm | 880023 | Ymm | 578617..578730 | 15..140 | 325 | 85.7 | Plus |
Ymm | 880023 | Ymm | 515332..515376 | 146..190 | 210 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:32:56 has no hits.
BO09244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:23 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RI | 1..1131 | 17..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:14 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RI | 161..1288 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:22 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 485..1612 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:23 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RI | 159..1292 | 15..1149 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:20 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pka-R1-RP | 485..1612 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:20 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20816660..20816833 | 17..190 | 100 | -> | Plus |
3L | 20832846..20833205 | 191..550 | 100 | -> | Plus |
3L | 20833283..20833657 | 551..925 | 100 | -> | Plus |
3L | 20833733..20833869 | 926..1062 | 100 | -> | Plus |
3L | 20834002..20834083 | 1063..1146 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:22 Download gff for
BO09244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20809760..20809933 | 17..190 | 100 | -> | Plus |
arm_3L | 20825946..20826305 | 191..550 | 100 | -> | Plus |
arm_3L | 20826383..20826757 | 551..925 | 100 | -> | Plus |
arm_3L | 20826833..20826969 | 926..1062 | 100 | -> | Plus |
arm_3L | 20827102..20827183 | 1063..1146 | 97 | | Plus |
BO09244.pep Sequence
Translation from 16 to 1162
> BO09244.pep
MSYMMAKTLEEQSLRECEHYIQTHGIQRVLKDCIVQLCVCRPENPVQFLR
QYFQKLEREQVKLDASRQVISPDDCEDLSPMPQTAAPPVRRRGGISAEPV
TEEDATNYVKKVVPKDYKTMNALSKAIAKNVLFAHLDESERSDIFDAMFP
VNHIAGENIIQQGDEGDNFYVIDVGEVDVFVNSELVTTISEGGSFGELAL
IYGTPRAATVRAKTDVKLWGIDRDSYRRILMGSTIRKRKMYEEFLSRVSI
LESLDKWERLTVADSLETCSFDDGETIVKQGAAGDDFYIILEGCAVVLQQ
RSEGEDPAEVGRLGSSDYFGEIALLLDRPRAATVVARGPLKCVKLDRARF
ERVLGPCADILKRNITQYNSFVSLSVASFLDH
BO09244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pka-R1-PU | 376 | CG42341-PU | 1..376 | 1..376 | 1929 | 100 | Plus |
Pka-R1-PT | 376 | CG42341-PT | 1..376 | 1..376 | 1929 | 100 | Plus |
Pka-R1-PP | 376 | CG42341-PP | 1..376 | 1..376 | 1929 | 100 | Plus |
Pka-R1-PM | 376 | CG42341-PM | 1..376 | 1..376 | 1929 | 100 | Plus |
Pka-R1-PL | 376 | CG3263-PJ | 1..376 | 1..376 | 1929 | 100 | Plus |