Clone BO09244 Report

Search the DGRC for BO09244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptPka-R1-RK
Protein status:BO09244.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO09244.3prime Sequence

913 bp (859 high quality bases) assembled on 2006-01-18

> BO09244.3prime
ATGGTCTAGAAAGCTTGCAACGGACAACGATACGAAACTGTTGTATTGCG
TGATGTTGCGTTTGAGTATGTCGGCGCAGGGTCCCAACACGCGTTCAAAT
CTCGCCCGGTCCAGTTTGACGCATTTGAGCGGCCCACGAGCTACAACAGT
CGCTGCACGTGGTCGGTCCAAAAGCAGAGCAATCTCGCCAAAGTAATCGC
TGCTACCCAGACGGCCCACCTCGGCGGGATCCTCGCCCTCAGAACGCTGC
TGCAGCACCACCGCACAGCCCTCGAGGATGATGTAGAAGTCATCGCCAGC
TGCTCCCTGCTTGACAATCGTCTCACCGTCATCGAAGGAGCACGTCTCCA
GGGAATCGGCCACTGTGAGGCGCTCCCATTTGTCCAAGCTCTCCAGAATG
GACACGCGCGATAAGAACTCCTCGTACATCTTGCGCTTGCGGATGGTCGA
GCCCATCAGAATGCGGCGGTAGGAGTCGCGGTCGATTCCCCACAGCTTCA
CATCGGTTTTGGCGCGCACGGTGGCGGCGCGAGGAGTGCCATAGATGAGG
GCCAGTTCACCAAAGCTGCCGCCCTCGCTGATGGTGGTCACTAGTTCGGA
GTTGACGAAAACATCGACCTCTCCCACATCAATCACGTAGAAGTTGTCGC
CTTCATCGCCCTGCTGGATGATATTCTCGCCGGCGATGTGATTCACAGGG
AACATGGCATCAAATATGTCGGATCTCTCGCTCTCGTCCAAGTGAGCGAA
CAGGACGTTCTTGGCAATCGCCTTGGACAGGGCATTCATCGTCTTGTAGT
CCTTGGGCACCACCTTCTTAACATAGTTGGTGGCATCCTCTTCGGTTACG
GGTTCGGCGGAGATTCCGCCTCGCCTGCGAACCGGTGGAGCAGCTGTTTG
TGGCATCGGGCTG

BO09244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3263-PC 1131 Pka-R1-RC 234..1128 913..19 4475 100 Minus
CG3263-PA 1131 Pka-R1-RA 234..1128 913..19 4475 100 Minus
CG3263-PE 960 Pka-R1-RE 63..957 913..19 4475 100 Minus
CG3263-PD 966 Pka-R1-RD 69..963 913..19 4475 100 Minus
CG3263-PG 1131 Pka-R1-RG 234..1128 913..19 4475 100 Minus
CG3263-PH 1131 Pka-R1-RH 234..1128 913..19 4475 100 Minus
CG3263-PI 1131 Pka-R1-RI 234..1128 913..19 4475 100 Minus
CG3263-PJ 1131 Pka-R1-RJ 234..1128 913..19 4475 100 Minus
CG3263-PB 891 Pka-R1-RB 1..888 906..19 4440 100 Minus
CG3263-PF 891 Pka-R1-RF 1..888 906..19 4440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RU 3570 CG42341-RU 711..1605 913..19 4475 100 Minus
Pka-R1-RT 3240 CG42341-RT 381..1275 913..19 4475 100 Minus
Pka-R1-RS 3068 CG42341-RS 209..1103 913..19 4475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20833283..20833658 612..237 1880 100 Minus
3L 28110227 3L 20832905..20833207 913..611 1515 100 Minus
3L 28110227 3L 20833731..20833869 239..101 695 100 Minus
3L 28110227 3L 20834000..20834083 102..19 420 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:05:01 has no hits.

BO09244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:33 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3263-PJ 234..1131 15..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:29 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3263-PA 234..1131 15..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:54 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RS 209..1107 14..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:18:21 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RS 209..1107 14..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:18:21 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20833733..20833869 101..237 100 -> Minus
3L 20834002..20834087 14..100 97   Minus
3L 20832905..20833205 613..913 100 -> Minus
3L 20833283..20833657 238..612 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:54 Download gff for BO09244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20826005..20826305 613..913 100 -> Minus
arm_3L 20826383..20826757 238..612 100 -> Minus
arm_3L 20826833..20826969 101..237 100 -> Minus
arm_3L 20827102..20827187 14..100 97   Minus

BO09244.5prime Sequence

938 bp (838 high quality bases) assembled on 2006-01-17

> BO09244.5prime
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTN
CAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
GGTGGTGCTGCAGCAGCGTTCTGAGGGCGAAGATCCCG

BO09244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3263-PC 1131 Pka-R1-RC 1..922 17..938 4541 99.6 Plus
CG3263-PA 1131 Pka-R1-RA 1..922 17..938 4541 99.6 Plus
CG3263-PG 1131 Pka-R1-RG 1..922 17..938 4541 99.6 Plus
CG3263-PH 1131 Pka-R1-RH 1..922 17..938 4541 99.6 Plus
CG3263-PI 1131 Pka-R1-RI 1..922 17..938 4541 99.6 Plus
CG3263-PJ 1131 Pka-R1-RJ 1..922 17..938 4541 99.6 Plus
CG3263-PE 960 Pka-R1-RE 3..751 190..938 3676 99.5 Plus
CG3263-PD 966 Pka-R1-RD 9..757 190..938 3676 99.5 Plus
CG3263-PB 891 Pka-R1-RB 1..682 257..938 3341 99.5 Plus
CG3263-PF 891 Pka-R1-RF 1..682 257..938 3341 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:31:00
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RU 3570 CG42341-RU 476..1399 15..938 4579 99.7 Plus
Pka-R1-RT 3240 CG42341-RT 146..1069 15..938 4579 99.7 Plus
Pka-R1-RP 3577 CG42341-RP 483..1406 15..938 4579 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20833283..20833658 551..926 1854 99.5 Plus
3L 28110227 3L 20832845..20833207 190..552 1815 100 Plus
3L 28110227 3L 20816658..20816834 15..191 885 100 Plus
U 3151297 U 973046..973165 66..191 415 90.5 Plus
Y 3667352 Y 3286046..3286204 191..15 395 84.2 Minus
Blast to na_te.dros performed on 2015-02-10 23:30:58 has no hits.

BO09244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:35 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3263-PA 1..922 17..938 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:31 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3263-PG 1..922 17..938 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:34:06 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 483..1406 15..938 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:55:53 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 483..1406 15..938 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:55:53 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20816658..20816833 15..190 100 -> Plus
3L 20832846..20833205 191..550 100 -> Plus
3L 20833283..20833661 551..930 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:34:06 Download gff for BO09244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20809758..20809933 15..190 100 -> Plus
arm_3L 20825946..20826305 191..550 100 -> Plus
arm_3L 20826383..20826761 551..930 98   Plus

BO09244.complete Sequence

1162 bp (1162 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631442

> BO09244.complete
GAAGTTATCAGTCGACATGTCCTACATGATGGCCAAAACGCTGGAGGAGC
AGAGCCTGCGGGAGTGCGAACACTACATCCAGACGCATGGGATCCAGCGA
GTCCTCAAGGACTGCATCGTCCAGCTGTGCGTCTGCAGACCCGAGAATCC
CGTGCAGTTCCTGCGACAGTACTTTCAGAAACTCGAGAGGGAACAAGTCA
AACTGGATGCCAGTAGACAGGTAATCAGCCCCGACGACTGCGAAGATCTC
AGCCCGATGCCACAAACAGCTGCTCCACCGGTTCGCAGGCGAGGCGGAAT
CTCCGCCGAACCCGTAACCGAAGAGGATGCCACCAACTATGTTAAGAAGG
TGGTGCCCAAGGACTACAAGACGATGAATGCCCTGTCCAAGGCGATTGCC
AAGAACGTCCTGTTCGCTCACTTGGACGAGAGCGAGAGATCCGACATATT
TGATGCCATGTTCCCTGTGAATCACATCGCCGGCGAGAATATCATCCAGC
AGGGCGATGAAGGCGACAACTTCTACGTGATTGATGTGGGAGAGGTCGAT
GTTTTCGTCAACTCCGAACTAGTGACCACCATCAGCGAGGGCGGCAGCTT
TGGTGAACTGGCCCTCATCTATGGCACTCCTCGCGCCGCCACCGTGCGCG
CCAAAACCGATGTGAAGCTGTGGGGAATCGACCGCGACTCCTACCGCCGC
ATTCTGATGGGCTCGACCATCCGCAAGCGCAAGATGTACGAGGAGTTCTT
ATCGCGCGTGTCCATTCTGGAGAGCTTGGACAAATGGGAGCGCCTCACAG
TGGCCGATTCCCTGGAGACGTGCTCCTTCGATGACGGTGAGACGATTGTC
AAGCAGGGAGCAGCTGGCGATGACTTCTACATCATCCTCGAGGGCTGTGC
GGTGGTGCTGCAGCAGCGTTCTGAGGGCGAGGATCCCGCCGAGGTGGGCC
GTCTGGGTAGCAGCGATTACTTTGGCGAGATTGCTCTGCTTTTGGACCGA
CCACGTGCAGCGACTGTTGTAGCTCGTGGGCCGCTCAAATGCGTCAAACT
GGACCGGGCGAGATTTGAACGCGTGTTGGGACCCTGCGCCGACATACTCA
AACGCAACATCACGCAATACAACAGTTTCGTATCGTTGTCCGTTGCAAGC
TTTCTAGACCAT

BO09244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RU 1131 CG42341-PU 1..1128 17..1144 5640 100 Plus
Pka-R1-RT 1131 CG42341-PT 1..1128 17..1144 5640 100 Plus
Pka-R1-RP 1131 CG42341-PP 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-RU 3570 CG42341-RU 476..1605 15..1144 5650 100 Plus
Pka-R1-RT 3240 CG42341-RT 146..1275 15..1144 5650 100 Plus
Pka-R1-RP 3577 CG42341-RP 483..1612 15..1144 5650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20833283..20833658 551..926 1880 100 Plus
3L 28110227 3L 20832845..20833207 190..552 1815 100 Plus
3L 28110227 3L 20816658..20816834 15..191 885 100 Plus
3L 28110227 3L 20833731..20833869 924..1062 695 100 Plus
3L 28110227 3L 20834000..20834083 1061..1144 420 100 Plus
U 3151297 U 973046..973165 66..191 415 90.5 Plus
Y 3667352 Y 3286046..3286204 191..15 395 84.2 Minus
Y 3667352 Y 3290393..3290551 191..15 395 84.2 Minus
Y 3667352 Y 3294658..3294816 191..15 395 84.2 Minus
Y 3667352 Y 3365375..3365533 191..15 395 84.2 Minus
Ymm 880023 Ymm 578617..578730 15..140 325 85.7 Plus
Ymm 880023 Ymm 515332..515376 146..190 210 97.8 Plus
Blast to na_te.dros performed on 2014-11-28 08:32:56 has no hits.

BO09244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:23 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RI 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:14 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RI 161..1288 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:22 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 485..1612 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:23 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RI 159..1292 15..1149 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:20 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
Pka-R1-RP 485..1612 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:20 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20816660..20816833 17..190 100 -> Plus
3L 20832846..20833205 191..550 100 -> Plus
3L 20833283..20833657 551..925 100 -> Plus
3L 20833733..20833869 926..1062 100 -> Plus
3L 20834002..20834083 1063..1146 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:22 Download gff for BO09244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20809760..20809933 17..190 100 -> Plus
arm_3L 20825946..20826305 191..550 100 -> Plus
arm_3L 20826383..20826757 551..925 100 -> Plus
arm_3L 20826833..20826969 926..1062 100 -> Plus
arm_3L 20827102..20827183 1063..1146 97   Plus

BO09244.pep Sequence

Translation from 16 to 1162

> BO09244.pep
MSYMMAKTLEEQSLRECEHYIQTHGIQRVLKDCIVQLCVCRPENPVQFLR
QYFQKLEREQVKLDASRQVISPDDCEDLSPMPQTAAPPVRRRGGISAEPV
TEEDATNYVKKVVPKDYKTMNALSKAIAKNVLFAHLDESERSDIFDAMFP
VNHIAGENIIQQGDEGDNFYVIDVGEVDVFVNSELVTTISEGGSFGELAL
IYGTPRAATVRAKTDVKLWGIDRDSYRRILMGSTIRKRKMYEEFLSRVSI
LESLDKWERLTVADSLETCSFDDGETIVKQGAAGDDFYIILEGCAVVLQQ
RSEGEDPAEVGRLGSSDYFGEIALLLDRPRAATVVARGPLKCVKLDRARF
ERVLGPCADILKRNITQYNSFVSLSVASFLDH

BO09244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Pka-R1-PU 376 CG42341-PU 1..376 1..376 1929 100 Plus
Pka-R1-PT 376 CG42341-PT 1..376 1..376 1929 100 Plus
Pka-R1-PP 376 CG42341-PP 1..376 1..376 1929 100 Plus
Pka-R1-PM 376 CG42341-PM 1..376 1..376 1929 100 Plus
Pka-R1-PL 376 CG3263-PJ 1..376 1..376 1929 100 Plus