Clone Sequence Records
BO09247.3prime Sequence
966 bp (816 high quality bases) assembled on 2006-01-18
> BO09247.3prime
ATGGTCTAGAAAGCTTGCAGAGTGCTCGGCCACCGCTCGAAGTTCATCCA
TGAGGGAGGGCATGGGCTCCACTCTCCTCCGTTCCCGACCAGCAATAATA
ATCCTGCTTAGCTCCTTCATATCAGACTGGCAGGCGGAAATACCCTCGCC
TAATTGGCACAAATTCGGTTGGCATCGCTGACTCCGCTCAATCAGATCGA
ATATGAAGCTGTTGCGAGGGCGACATGTTTCATTGGCGGTTTGCTGAACG
AGCTTCTTGTAGTCATCAATAAGATTAGCCACTTCATGGGCGGGTTCCTG
GGGCGTGTTGCTAGCCGTCGATTTGCCCGAGTCCGAGGCCTCAAACCGCG
CTCGCTCCATTACCAAAGTGTGCTCCAGACACTTAATTTTTGACAAAGCT
TGCTGATGCCTTCCGCTGATCTCCGCCAGCTTCATTTTAAGCCCAGGAAG
CTCTTCAGCCTTTCGATTGTTAACCCTCCCATTTCGCAGTTCCTTTCGAA
GAATTTTGGCCAACTGAGGCCAGCTTTTTATATGTGGTAGCCTCCTTCCT
GTTTCCATCTCAAGAACGTGACCAAGAGATCGCAAACACTCTACTGCTTT
GCGTTCTTCTCGCGCAATTTCCTCCTTCTCATCTAGCAAAGACTTTACCT
GGCCTTGCAGCCTTTGCATGTTAATCGACGCAGCGGAGTTTATCTTCAGA
TTCTCTTGGAATGTTTTCTTCAAAAGCTGTAACTCTAGTCGATTTTCCTC
GTCCTGCGCTTGGCTCAATTTCTGGAGCTTTTGCAGTTCATCATTTTGTC
CAGCGAACAATTCATTCAGGTGCTCCAATTCAACCGTCTTATGCTGTAGT
TCTGATCGCATTTCCTGCTCCAAGCTTTGAGTAGCTTGCAGAGCATCTAA
CAGTTGTTGCCAGTCTGCTTCCATTTCGNTAGTGCTCTTGATTTTAGCTT
CTTGCTGTTGAAGCAG
BO09247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PB | 2493 | CG11248-RB | 1543..2490 | 966..19 | 4721 | 99.8 | Minus |
| CG11248-PA | 2493 | CG11248-RA | 1543..2490 | 966..19 | 4721 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:04:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 1733..2680 | 966..19 | 4729 | 99.9 | Minus |
| CG11248-RA | 2989 | CG11248-RA | 1724..2671 | 966..19 | 4729 | 99.9 | Minus |
| CG11248-RB | 2918 | CG11248-RB | 1653..2600 | 966..19 | 4729 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:04:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21681849..21682433 | 966..382 | 2914 | 99.8 | Minus |
| 3L | 28110227 | 3L | 21682678..21682913 | 254..19 | 1180 | 100 | Minus |
| 3L | 28110227 | 3L | 21682493..21682623 | 383..253 | 655 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:04:07 has no hits.
BO09247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:36 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PB | 1543..2493 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:32 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PA | 1543..2493 | 18..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:58:50 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 1653..2600 | 19..966 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:04:33 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 1653..2600 | 19..966 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:04:33 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21681849..21682433 | 382..966 | 99 | -> | Minus |
| 3L | 21682495..21682623 | 253..381 | 100 | -> | Minus |
| 3L | 21682680..21682913 | 19..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:58:50 Download gff for
BO09247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21674949..21675533 | 382..966 | 99 | -> | Minus |
| arm_3L | 21675595..21675723 | 253..381 | 100 | -> | Minus |
| arm_3L | 21675780..21676013 | 19..252 | 100 | | Minus |
BO09247.5prime Sequence
876 bp (798 high quality bases) assembled on 2006-01-18
> BO09247.5prime
GAAGTTATCAGTCGACATGGATTTGGACTGCGAGGGCGCTACAGCTTTGG
CTGACGACTCAGGGCACTTTAGCTGCACTAGCGATGATGGAGTAGGAGAT
CCTGCTCAGAAACCGGCGCCGCAGCCTGAACCGGACCAATCGATTTTTCT
GGTGCGGCAAGAGCTGCTTCGGACGCGCAGTGAGGTGCAAAGGCTCTTAA
AATCGGAGCAGTGGTACAAGCAGGAGCTTAAGTCCCAGAAGCACAGCAGG
CTACAGACGCTAGAACGATTGTACGCACAGGAACGGAAGTATTTGATGGA
GAACCAGAAGCTGCAGCAAGAATCGATCCGCCTGCACACACAATGCGCCA
CTCTGGAGAAGCAGCAGGAGCAGGGCTCACCATTTTCCCCTGGCTCATCG
CCGTTTAAAGCAGACTCGGAGTCACACGACTCCTCTTTTGAGGCCAAACA
GCAGGAGGCGCGCCTACGGGATCAGCGTCAGTTGATCGACGTGCTCCGAA
GGCAAAAGAAGATGCTTCTGGACGACATCCAGAGGATCAGTCTGGAACAC
GATGAAAAACTTTCGCAGTTGCAGCAAACTGTTGTCGGCATGGAGCTGGA
GAGCAAGCACGTGACTGGAAAATGCAAGCAACTACTTGACCTTAAAAGTC
AAATGGAGCACCAGCTAGAGCTAAGAAGCACTACCCTACGCAGTGTCACC
GCGGAGCGTGATCAGCTGCGCCAAGTCATTGCTGAGCTTAACGAGACGCT
GCAAACGCAGGAGCATCTGTTAGCGCTAAAGGAACAGGAGTTCCTGGATT
TGNAACAGTACTACCAACAAAAGCTGAAACGGGAGAGTAGCATGGAAATT
ATGCACTCTTATAGCATGAAATTTCA
BO09247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PB | 2493 | CG11248-RB | 1..860 | 17..876 | 4281 | 99.8 | Plus |
| CG11248-PA | 2493 | CG11248-RA | 1..860 | 17..876 | 4281 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 191..1050 | 17..876 | 4289 | 99.9 | Plus |
| CG11248-RA | 2989 | CG11248-RA | 182..1041 | 17..876 | 4289 | 99.9 | Plus |
| CG11248-RB | 2918 | CG11248-RB | 111..970 | 17..876 | 4289 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:36:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21680307..21681166 | 17..876 | 4289 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:36:25 has no hits.
BO09247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:37 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PB | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:34 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-PA | 1..859 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:52 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..969 | 17..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:16:19 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..969 | 17..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:16:19 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21680296..21681165 | 8..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:52 Download gff for
BO09247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21673396..21674265 | 8..875 | 99 | | Plus |
BO09247.complete Sequence
2524 bp (2524 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631443
> BO09247.complete
GAAGTTATCAGTCGACATGGATTTGGACTGCGAGGGCGCTACAGCTTTGG
CTGACGACTCAGGGCACTTTAGCTGCACTAGCGATGATGGAGTAGGAGAT
CCTGCTCAGAAACCGGCGCCGCAGCCTGAACCGGACCAATCGATTTTTCT
GGTGCGGCAAGAGCTGCTTCGGACGCGCAGTGAGGTGCAAAGGCTCTTAA
AATCGGAGCAGTGGTACAAGCAGGAGCTTAAGTCCCAGAAGCACAGCAGG
CTACAGACGCTAGAACGATTGTACGCACAGGAACGGAAGTATTTGATGGA
GAACCAGAAGCTGCAGCAAGAATCGATCCGCCTGCACACACAATGCGCCA
CTCTGGAGAAGCAGCAGGAGCAGGGCTCACCATTTTCCCCTGGCTCATCG
CCGTTTAAAGCAGACTCGGAGTCACACGACTCCTCTTTTGAGGCCAAACA
GCAGGAGGCGCGCCTACGGGATCAGCGTCAGTTGATCGACGTGCTCCGAA
GGCAAAAGAAGATGCTTCTGGACGACATCCAGAGGATCAGTCTGGAACAC
GATGAAAAACTTTCGCAGTTGCAGCAAACTGTTGTCGGCATGGAGCTGGA
GAGCAAGCACGTGACTGGAAAATGCAAGCAACTACTTGACCTTAAAAGTC
AAATGGAGCACCAGCTAGAGCTAAGAAGCACTACCCTACGCAGTGTCACC
GCGGAGCGTGATCAGCTGCGCCAAGTCATTGCTGAGCTTAACGAGACGCT
GCAAACGCAGGAGCATCTGTTAGCGCTAAAGGAACAGGAGTTCCTGGATT
TGAAACAGTACTACCAACAAAAGCTGAAACGGGAGAGTAGCATGGAAATT
ATGCACTCTTATAGCATGAAATTTCACGAAGAGATCAACAGAAAAACGAG
TGAAATTGCCAGCCTTAAGAATTCTCTTAACGAGCTTCAGGCCGAGCTGA
TGCTGATGTCTCACATGAAAGAGCAATGCGAGGAACAGCAGCGTCAGCTT
GAGCAACTGGAGTTCGCATTGCAGGCACAACTTTTGGAGGAGACTCAACT
TCGGCAAAGCAATGCTCTAAAACTGGAGCAGGTGGAAAATTTAACAATTT
CTTTGGCTTCGTTACAACTAGATAAGGAAGGCTTAAAAGAAAATTTAGGT
GAGGCGCAAAAGACCTTGAAAAATCTACAGCAGAAGGTGGACATTCTTCA
AAAACAGTATGCCGAAATGTGCTCCTTGTGTCAAAAGACTAAACAGCAAT
TGGAACTGGAGAAAATCGAGATTGCCAAAATGAAGCAAAACGGTTCCTTA
AAGGAAAGTGAGCTAATGGAGAAACTCAAAGATTATGCAGCGCAGTGTGA
TGAGCTGAGAAAAGCGTTGGCCGAAGCAGAGTCCCGTATCGATGTCCAAA
TCAAAAAGACAGAGGGCTGGCAAGTGCAGTTGAAACACAACCAAGCGACC
CAAACGGACCTCGAAGATCCGATTTTAGTTCAACGCATTGAGACTTTGGA
ACAACAACTAGCGGATGTCAGGAGCCAAAAATTGCACACAGTTTCGCTGC
TCCAAATACTGCTTCAACAGCAAGAAGCTAAAATCAAGAGCACTAACGAA
ATGGAAGCAGACTGGCAACAACTGTTAGATGCTCTGCAAGCTACTCAAAG
CTTGGAGCAGGAAATGCGATCAGAACTACAGCATAAGACGGTTGAATTGG
AGCACCTGAATGAATTGTTCGCTGGACAAAATGATGAACTGCAAAAGCTC
CAGAAATTGAGCCAAGCGCAGGACGAGGAAAATCGACTAGAGTTACAGCT
TTTGAAGAAAACATTCCAAGAGAATCTGAAGATAAACTCCGCTGCGTCGA
TTAACATGCAAAGGCTGCAAGGCCAGGTAAAGTCTTTGCTAGATGAGAAG
GAGGAAATTGCGCGAGAAGAACGCAAAGCAGTAGAGTGTTTGCGATCTCT
TGGTCACGTTCTTGAGATGGAAACAGGAAGGAGGCTACCACATATAAAAA
GCTGGCCTCAGTTGGCCAAAATTCTTCGAAAGGAACTGCGAAATGGGAGG
GTTAACAATCGAAAGGCTGAAGAGCTTCCTGGGCTTAAAATGAAGCTGGC
GGAGATCAGCGGAAGGCATCAGCAAGCTTTGTCAAAAATTAAGTGTCTGG
AGCACACTTTGGTAATGGAGCGAGCGCGGTTTGAGGCCTCGGACTCGGGC
AAATCGACGGCTAGCAACACGCCCCAGGAACCCGCCCATGAAGTGGCTAA
TCTTATTGATGACTACAAGAAGCTCGTTCAGCAAACCGCCAATGAAACAT
GTCGCCCTCGCAACAGCTTCATATTCGATCTGATTGAGCGGAGTCAGCGA
TGCCAACCGAATTTGTGCCAATTAGGCGAGGGTATTTCCGCCTGCCAGTC
TGATATGAAGGAGCTAAGCAGGATTATTATTGCTGGTCGGGAACGGAGGA
GAGTGGAGCCCATGCCCTCCCTCATGGATGAACTTCGAGCGGTGGCCGAG
CACTCTGCAAGCTTTCTAGACCAT
BO09247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2493 | CG11248-PC | 1..2490 | 17..2506 | 12450 | 100 | Plus |
| CG11248-RA | 2493 | CG11248-PA | 1..2490 | 17..2506 | 12450 | 100 | Plus |
| CG11248-RB | 2493 | CG11248-PB | 1..2490 | 17..2506 | 12450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-RC | 2998 | CG11248-RC | 191..2680 | 17..2506 | 12450 | 100 | Plus |
| CG11248-RA | 2989 | CG11248-RA | 182..2671 | 17..2506 | 12450 | 100 | Plus |
| CG11248-RB | 2918 | CG11248-RB | 111..2600 | 17..2506 | 12450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21680307..21682433 | 17..2143 | 10635 | 100 | Plus |
| 3L | 28110227 | 3L | 21682678..21682913 | 2271..2506 | 1180 | 100 | Plus |
| 3L | 28110227 | 3L | 21682493..21682623 | 2142..2272 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:03:19 has no hits.
BO09247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:22 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RA | 1..2493 | 17..2507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:24 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RA | 128..2617 | 17..2506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:39:12 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..2600 | 17..2508 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:23 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RA | 128..2617 | 17..2506 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:45 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11248-RB | 111..2600 | 17..2508 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:45 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21680307..21682433 | 17..2143 | 100 | -> | Plus |
| 3L | 21682495..21682623 | 2144..2272 | 100 | -> | Plus |
| 3L | 21682680..21682913 | 2273..2508 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:39:12 Download gff for
BO09247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21673407..21675533 | 17..2143 | 100 | -> | Plus |
| arm_3L | 21675595..21675723 | 2144..2272 | 100 | -> | Plus |
| arm_3L | 21675780..21676013 | 2273..2508 | 99 | | Plus |
BO09247.pep Sequence
Translation from 16 to 2524
> BO09247.pep
MDLDCEGATALADDSGHFSCTSDDGVGDPAQKPAPQPEPDQSIFLVRQEL
LRTRSEVQRLLKSEQWYKQELKSQKHSRLQTLERLYAQERKYLMENQKLQ
QESIRLHTQCATLEKQQEQGSPFSPGSSPFKADSESHDSSFEAKQQEARL
RDQRQLIDVLRRQKKMLLDDIQRISLEHDEKLSQLQQTVVGMELESKHVT
GKCKQLLDLKSQMEHQLELRSTTLRSVTAERDQLRQVIAELNETLQTQEH
LLALKEQEFLDLKQYYQQKLKRESSMEIMHSYSMKFHEEINRKTSEIASL
KNSLNELQAELMLMSHMKEQCEEQQRQLEQLEFALQAQLLEETQLRQSNA
LKLEQVENLTISLASLQLDKEGLKENLGEAQKTLKNLQQKVDILQKQYAE
MCSLCQKTKQQLELEKIEIAKMKQNGSLKESELMEKLKDYAAQCDELRKA
LAEAESRIDVQIKKTEGWQVQLKHNQATQTDLEDPILVQRIETLEQQLAD
VRSQKLHTVSLLQILLQQQEAKIKSTNEMEADWQQLLDALQATQSLEQEM
RSELQHKTVELEHLNELFAGQNDELQKLQKLSQAQDEENRLELQLLKKTF
QENLKINSAASINMQRLQGQVKSLLDEKEEIAREERKAVECLRSLGHVLE
METGRRLPHIKSWPQLAKILRKELRNGRVNNRKAEELPGLKMKLAEISGR
HQQALSKIKCLEHTLVMERARFEASDSGKSTASNTPQEPAHEVANLIDDY
KKLVQQTANETCRPRNSFIFDLIERSQRCQPNLCQLGEGISACQSDMKEL
SRIIIAGRERRRVEPMPSLMDELRAVAEHSASFLDH
BO09247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11248-PC | 830 | CG11248-PC | 1..830 | 1..830 | 4153 | 100 | Plus |
| CG11248-PA | 830 | CG11248-PA | 1..830 | 1..830 | 4153 | 100 | Plus |
| CG11248-PB | 830 | CG11248-PB | 1..830 | 1..830 | 4153 | 100 | Plus |
| zip-PH | 1964 | CG15792-PH | 960..1775 | 56..786 | 306 | 21.7 | Plus |
| zip-PG | 1971 | CG15792-PG | 952..1767 | 56..786 | 306 | 21.7 | Plus |
| zip-PH | 1964 | CG15792-PH | 850..1510 | 50..713 | 226 | 20.8 | Plus |
| zip-PH | 1964 | CG15792-PH | 1106..1873 | 23..756 | 205 | 21 | Plus |
