Clone BO09248 Report

Search the DGRC for BO09248

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17184-RA
Protein status:BO09248.pep: validated full length
Sequenced Size:1099

Clone Sequence Records

BO09248.3prime Sequence

932 bp (849 high quality bases) assembled on 2006-01-18

> BO09248.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCAGCCAGGATCCAGTGACGGCATTGG
GTGACTTAAGCTTTATGTTGAACTGCTTCAGAGTGCTCTCCAGTGCCATG
GCATTGCCCGAGAAGTAGGCAGCGATGGCATTGTGCAGCAGAATCAATTG
CTTGTGCATCACTTTAATGCGATTCTCGTCGAGAAATTGCATTTTGACGG
CCACGTCCGAGCGCAGCTTCTCATATTGCTCCTTGTGCTGCGCATAGCTG
CGCTGGGTCTCCTCAAGAGCGACGGCCGAGGGCGTCAGCTCCGGCTTGGT
GTTCTCCAAATCCATGCGGTAGGCATCGAATTCGATTCTGGCCGTTTCGT
ACTGTCGTATCGTCAGCAGCGTATCGTCGATCGTCTTGTTGCACAGTGTG
TTCACCGACGAAATAAAGAAGTTGAGCGCATTAAGCAGCAGCTCGCCGTT
CTTGGTGAGATTGCGCTGCGTCTCCGAATTGCACGTGAACTCTTTCTGCA
GCTCGGGGTTCTTCTGGGCCAGATCGGCGAAGGAGTCGGCCAGGGCGTGC
TGTGTGACGACCACGTGCTGGAAGTGCGAACTAAAGGCCCGCGTTAGCCT
CAAGATGGACAGATACTTGCGCTGCGTCTCGCGCAACTGCTCTATCTGGG
CCTCCAGTTCCGAGTCCACGGTCCGCTGCGACTTGCCCAACTTCTCCAGC
ATTATCTGTCGCGTACACTTGTACGTCGATATACTCCAGTTCTTGAGACT
GTCGATCTTGGAGGCGCTAGTGCGTATAATGCTGCCGCTCCCGCTGTCCG
TGGGGCTCAGGATGCCGTTACCGGATGGTGGACTACTGGGCGACATGGGT
GTGGTGGGTGCTGAATGGTTTCTTAGTGGCAGGCTGCTGGGGGCGCCAAA
GGGGCCGCCGACACCAACTCCACGTTGCCGCC

BO09248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17184-PB 1068 CG17184-RB 162..1065 922..19 4520 100 Minus
CG17184-PA 1068 CG17184-RA 162..1065 922..19 4520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 434..1348 932..19 4550 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 338..863 2630 100 Plus
3R 32079331 3R 11233402..11233572 169..339 855 100 Plus
3R 32079331 3R 11233217..11233324 61..168 540 100 Plus
3R 32079331 3R 11234508..11234580 861..932 315 98.6 Plus
3R 32079331 3R 11233085..11233128 19..62 220 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:18:36 has no hits.

BO09248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:38 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 151..1068 18..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:35 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 151..1068 18..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:51 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 434..1348 19..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:47 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 434..1348 19..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:47 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11234508..11234580 861..932 98   Plus
3R 11233085..11233126 19..60 100 <- Plus
3R 11233217..11233324 61..168 100 <- Plus
3R 11233402..11233570 169..337 100 <- Plus
3R 11233922..11234444 338..860 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:51 Download gff for BO09248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7058807..7058848 19..60 100 <- Plus
arm_3R 7058939..7059046 61..168 100 <- Plus
arm_3R 7059124..7059292 169..337 100 <- Plus
arm_3R 7059644..7060166 338..860 100 <- Plus
arm_3R 7060230..7060302 861..932 98   Plus

BO09248.5prime Sequence

902 bp (815 high quality bases) assembled on 2006-01-18

> BO09248.5prime
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CG

BO09248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17184-PB 1068 CG17184-RB 1..886 17..902 4430 100 Plus
CG17184-PA 1068 CG17184-RA 1..886 17..902 4430 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 284..1169 17..902 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 762..237 2630 100 Minus
3R 32079331 3R 11234508..11234730 239..17 1115 100 Minus
3R 32079331 3R 11233431..11233572 902..761 710 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:34:30 has no hits.

BO09248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:39 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:37 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17184-PA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:16 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 277..1169 9..902 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:12:20 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 277..1169 9..902 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:12:20 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11233431..11233570 763..902 100 <- Minus
3R 11233922..11234444 240..762 100 <- Minus
3R 11234508..11234737 9..239 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:16 Download gff for BO09248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7059153..7059292 763..902 100 <- Minus
arm_3R 7059644..7060166 240..762 100 <- Minus
arm_3R 7060230..7060459 9..239 98   Minus

BO09248.complete Sequence

1099 bp (1099 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631444

> BO09248.complete
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACGAGAATCGCATTAAAGTGATGCACAAGC
AATTGATTCTGCTGCACAATGCCATCGCTGCCTACTTCTCGGGCAATGCC
ATGGCACTGGAGAGCACTCTGAAGCAGTTCAACATAAAGCTTAAGTCACC
CAATGCCGTCACTGGATCCTGGCTGGAGCAGGCAAGCTTTCTAGACCAT

BO09248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 1068 CG17184-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:33
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-RA 2004 CG17184-RA 284..1348 17..1081 5325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11233922..11234447 762..237 2630 100 Minus
3R 32079331 3R 11234508..11234730 239..17 1115 100 Minus
3R 32079331 3R 11233402..11233572 931..761 855 100 Minus
3R 32079331 3R 11233217..11233324 1039..932 540 100 Minus
3R 32079331 3R 11233085..11233128 1081..1038 220 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:31:31 has no hits.

BO09248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:12 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 1..1068 17..1082 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:06 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 292..1363 9..1081 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:36 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 284..1348 17..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:12 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17184-RA 292..1363 9..1081 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:27 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
Arfip-RA 284..1348 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:27 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11233083..11233126 1040..1083 95 <- Minus
3R 11233217..11233324 932..1039 100 <- Minus
3R 11233402..11233570 763..931 100 <- Minus
3R 11233922..11234444 240..762 100 <- Minus
3R 11234508..11234730 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:36 Download gff for BO09248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7058805..7058848 1040..1083 95 <- Minus
arm_3R 7058939..7059046 932..1039 100 <- Minus
arm_3R 7059124..7059292 763..931 100 <- Minus
arm_3R 7059644..7060166 240..762 100 <- Minus
arm_3R 7060230..7060452 17..239 100   Minus

BO09248.pep Sequence

Translation from 16 to 1099

> BO09248.pep
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQASFLDH

BO09248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:17
Subject Length Description Subject Range Query Range Score Percent Strand
Arfip-PA 355 CG17184-PA 1..355 1..355 1809 100 Plus