Clone Sequence Records
BO09248.3prime Sequence
932 bp (849 high quality bases) assembled on 2006-01-18
> BO09248.3prime
ATGGTCTAGAAAGCTTGCCTGCTCCAGCCAGGATCCAGTGACGGCATTGG
GTGACTTAAGCTTTATGTTGAACTGCTTCAGAGTGCTCTCCAGTGCCATG
GCATTGCCCGAGAAGTAGGCAGCGATGGCATTGTGCAGCAGAATCAATTG
CTTGTGCATCACTTTAATGCGATTCTCGTCGAGAAATTGCATTTTGACGG
CCACGTCCGAGCGCAGCTTCTCATATTGCTCCTTGTGCTGCGCATAGCTG
CGCTGGGTCTCCTCAAGAGCGACGGCCGAGGGCGTCAGCTCCGGCTTGGT
GTTCTCCAAATCCATGCGGTAGGCATCGAATTCGATTCTGGCCGTTTCGT
ACTGTCGTATCGTCAGCAGCGTATCGTCGATCGTCTTGTTGCACAGTGTG
TTCACCGACGAAATAAAGAAGTTGAGCGCATTAAGCAGCAGCTCGCCGTT
CTTGGTGAGATTGCGCTGCGTCTCCGAATTGCACGTGAACTCTTTCTGCA
GCTCGGGGTTCTTCTGGGCCAGATCGGCGAAGGAGTCGGCCAGGGCGTGC
TGTGTGACGACCACGTGCTGGAAGTGCGAACTAAAGGCCCGCGTTAGCCT
CAAGATGGACAGATACTTGCGCTGCGTCTCGCGCAACTGCTCTATCTGGG
CCTCCAGTTCCGAGTCCACGGTCCGCTGCGACTTGCCCAACTTCTCCAGC
ATTATCTGTCGCGTACACTTGTACGTCGATATACTCCAGTTCTTGAGACT
GTCGATCTTGGAGGCGCTAGTGCGTATAATGCTGCCGCTCCCGCTGTCCG
TGGGGCTCAGGATGCCGTTACCGGATGGTGGACTACTGGGCGACATGGGT
GTGGTGGGTGCTGAATGGTTTCTTAGTGGCAGGCTGCTGGGGGCGCCAAA
GGGGCCGCCGACACCAACTCCACGTTGCCGCC
BO09248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17184-PB | 1068 | CG17184-RB | 162..1065 | 922..19 | 4520 | 100 | Minus |
CG17184-PA | 1068 | CG17184-RA | 162..1065 | 922..19 | 4520 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 434..1348 | 932..19 | 4550 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 338..863 | 2630 | 100 | Plus |
3R | 32079331 | 3R | 11233402..11233572 | 169..339 | 855 | 100 | Plus |
3R | 32079331 | 3R | 11233217..11233324 | 61..168 | 540 | 100 | Plus |
3R | 32079331 | 3R | 11234508..11234580 | 861..932 | 315 | 98.6 | Plus |
3R | 32079331 | 3R | 11233085..11233128 | 19..62 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:18:36 has no hits.
BO09248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:38 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 151..1068 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:35 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 151..1068 | 18..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:35:51 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 434..1348 | 19..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:07:47 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 434..1348 | 19..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:07:47 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11234508..11234580 | 861..932 | 98 | | Plus |
3R | 11233085..11233126 | 19..60 | 100 | <- | Plus |
3R | 11233217..11233324 | 61..168 | 100 | <- | Plus |
3R | 11233402..11233570 | 169..337 | 100 | <- | Plus |
3R | 11233922..11234444 | 338..860 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:35:51 Download gff for
BO09248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7058807..7058848 | 19..60 | 100 | <- | Plus |
arm_3R | 7058939..7059046 | 61..168 | 100 | <- | Plus |
arm_3R | 7059124..7059292 | 169..337 | 100 | <- | Plus |
arm_3R | 7059644..7060166 | 338..860 | 100 | <- | Plus |
arm_3R | 7060230..7060302 | 861..932 | 98 | | Plus |
BO09248.5prime Sequence
902 bp (815 high quality bases) assembled on 2006-01-18
> BO09248.5prime
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CG
BO09248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17184-PB | 1068 | CG17184-RB | 1..886 | 17..902 | 4430 | 100 | Plus |
CG17184-PA | 1068 | CG17184-RA | 1..886 | 17..902 | 4430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 284..1169 | 17..902 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 762..237 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 11234508..11234730 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 11233431..11233572 | 902..761 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:34:30 has no hits.
BO09248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:39 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:37 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-PA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:16 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 277..1169 | 9..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:12:20 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 277..1169 | 9..902 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:12:20 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11233431..11233570 | 763..902 | 100 | <- | Minus |
3R | 11233922..11234444 | 240..762 | 100 | <- | Minus |
3R | 11234508..11234737 | 9..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:16 Download gff for
BO09248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7059153..7059292 | 763..902 | 100 | <- | Minus |
arm_3R | 7059644..7060166 | 240..762 | 100 | <- | Minus |
arm_3R | 7060230..7060459 | 9..239 | 98 | | Minus |
BO09248.complete Sequence
1099 bp (1099 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631444
> BO09248.complete
GAAGTTATCAGTCGACATGACGGACCGCGAGCGCAGCATTCACGAAATGC
TGAAGGATGCGCCCTCGCTGAACGACAGCTGCGGAGCGGTGCACACGGGC
ACCGAAGGCGGCAGCGGGATCCTTGGAAGCGCCAGCAGCCACAGCATCGC
CGGCGGAGGAGGTGGTGGCGGCAACGTTGGAGTTGGTGTCGGCGGCCCCT
TTGGCGCCCCCAGCAGCCTGCCACTAAGAAACCATTCAGCACCCACCACA
CCCATGTCGCCCAGTAGTCCACCATCCGGTAACGGCATCCTGAGCCCCAC
GGACAGCGGGAGCGGCAGCATTATACGCACTAGCGCCTCCAAGATCGACA
GTCTCAAGAACTGGAGTATATCGACGTACAAGTGTACGCGACAGATAATG
CTGGAGAAGTTGGGCAAGTCGCAGCGGACCGTGGACTCGGAACTGGAGGC
CCAGATAGAGCAGTTGCGCGAGACGCAGCGCAAGTATCTGTCCATCTTGA
GGCTAACGCGGGCCTTTAGTTCGCACTTCCAGCACGTGGTCGTCACACAG
CACGCCCTGGCCGACTCCTTCGCCGATCTGGCCCAGAAGAACCCCGAGCT
GCAGAAAGAGTTCACGTGCAATTCGGAGACGCAGCGCAATCTCACCAAGA
ACGGCGAGCTGCTGCTTAATGCGCTCAACTTCTTTATTTCGTCGGTGAAC
ACACTGTGCAACAAGACGATCGACGATACGCTGCTGACGATACGACAGTA
CGAAACGGCCAGAATCGAATTCGATGCCTACCGCATGGATTTGGAGAACA
CCAAGCCGGAGCTGACGCCCTCGGCCGTCGCTCTTGAGGAGACCCAGCGC
AGCTATGCGCAGCACAAGGAGCAATATGAGAAGCTGCGCTCGGACGTGGC
CGTCAAAATGCAATTTCTCGACGAGAATCGCATTAAAGTGATGCACAAGC
AATTGATTCTGCTGCACAATGCCATCGCTGCCTACTTCTCGGGCAATGCC
ATGGCACTGGAGAGCACTCTGAAGCAGTTCAACATAAAGCTTAAGTCACC
CAATGCCGTCACTGGATCCTGGCTGGAGCAGGCAAGCTTTCTAGACCAT
BO09248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:31:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 1068 | CG17184-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:31:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-RA | 2004 | CG17184-RA | 284..1348 | 17..1081 | 5325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:31:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11233922..11234447 | 762..237 | 2630 | 100 | Minus |
3R | 32079331 | 3R | 11234508..11234730 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 11233402..11233572 | 931..761 | 855 | 100 | Minus |
3R | 32079331 | 3R | 11233217..11233324 | 1039..932 | 540 | 100 | Minus |
3R | 32079331 | 3R | 11233085..11233128 | 1081..1038 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:31:31 has no hits.
BO09248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:12 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 1..1068 | 17..1082 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:06 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 292..1363 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:55:36 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 284..1348 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:12 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17184-RA | 292..1363 | 9..1081 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:27 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arfip-RA | 284..1348 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:27 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11233083..11233126 | 1040..1083 | 95 | <- | Minus |
3R | 11233217..11233324 | 932..1039 | 100 | <- | Minus |
3R | 11233402..11233570 | 763..931 | 100 | <- | Minus |
3R | 11233922..11234444 | 240..762 | 100 | <- | Minus |
3R | 11234508..11234730 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:55:36 Download gff for
BO09248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7058805..7058848 | 1040..1083 | 95 | <- | Minus |
arm_3R | 7058939..7059046 | 932..1039 | 100 | <- | Minus |
arm_3R | 7059124..7059292 | 763..931 | 100 | <- | Minus |
arm_3R | 7059644..7060166 | 240..762 | 100 | <- | Minus |
arm_3R | 7060230..7060452 | 17..239 | 100 | | Minus |
BO09248.pep Sequence
Translation from 16 to 1099
> BO09248.pep
MTDRERSIHEMLKDAPSLNDSCGAVHTGTEGGSGILGSASSHSIAGGGGG
GGNVGVGVGGPFGAPSSLPLRNHSAPTTPMSPSSPPSGNGILSPTDSGSG
SIIRTSASKIDSLKNWSISTYKCTRQIMLEKLGKSQRTVDSELEAQIEQL
RETQRKYLSILRLTRAFSSHFQHVVVTQHALADSFADLAQKNPELQKEFT
CNSETQRNLTKNGELLLNALNFFISSVNTLCNKTIDDTLLTIRQYETARI
EFDAYRMDLENTKPELTPSAVALEETQRSYAQHKEQYEKLRSDVAVKMQF
LDENRIKVMHKQLILLHNAIAAYFSGNAMALESTLKQFNIKLKSPNAVTG
SWLEQASFLDH
BO09248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arfip-PA | 355 | CG17184-PA | 1..355 | 1..355 | 1809 | 100 | Plus |