Clone BO09250 Report

Search the DGRC for BO09250

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptDhpD-RA
Protein status:BO09250.pep: Imported from assembly
Sequenced Size:1378

Clone Sequence Records

BO09250.3prime Sequence

914 bp (836 high quality bases) assembled on 2006-01-18

> BO09250.3prime
ATGGTCTAGAAAGCTTGCTTGGTATCCCTGTTTAATACGCTTGCCGGCCA
CGAAAACTTCTACAATGTTGCGGTCACTGCCTGTGTAAATGAACTTCTCC
ACCAGCTCATCGACGCTCAGCCTCCGCAAGGGTTTATCGACGACGCTGAC
ATCCACCAACAAAGCATCGAAATCCTTCCCTAGAGCAAAGTTTCCGGTCA
AGTGATCGAGGGACAGCGCTTTGGCGCCACCCAAAGTGGCCAAGTAGAGC
GCCTGCTTGTACTTCAACTGATGGTAATTGAAATCTTGTGTTTTGGACAC
ACCCGTCCCGCGGATGTTCTGCTTCTTAAAAAAGTCTAAGTGTTTTGACA
CGTCCAATGCGCGGAGCAGAACGTCCTGAATCGAGACGGAGTTTCCCCCC
GAAACGTCTGTGCCGAGACCTACGCTCACGCCGCCGCTCACCAGCCGTTG
GACATCGCACAGACCGGAGCTTAGCATTGTGTTCGAAGTGGGACAGTGGG
CTACCGAGCACCCCCGGACTTTAAGAAGTGCCACCTCGTCGTCCTCCAGA
TGCACGCCGTGAGCCAGTACAGTCTTATTCGTTAGCAGTCCAGCCTCGTC
GTATGCTCCGGCATAGCTGGTCTTAAATATCCCCTTTACCATCTCGATCT
CTTCCAGGTTTTCGCTGATGTGACTCTGGATATGCAGGTCAAATCGCTTT
GCTATATCGCCCAGACTCTTTAGCAGCTCCTTGCTGCAGCTAAGGGCAAA
GCGGGGCGTAATCGTTGGCATCACCATCGGGCTGCCGAGCTTCCGCACGC
CCTCCACGAAAGCCAGGGTTGCACTGACCGACTCTTCCGCAGTCTCCACG
TAAAACTCGGGGCTGTTGCAGTTGAAGCAGACCTTGNCTATCAGTGCCCG
CTGGCCTTGACGCA

BO09250.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 449..1344 914..19 4436 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 544..1439 914..19 4454 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227538..4228094 19..575 2785 100 Plus
3R 32079331 3R 4228148..4228421 574..847 1370 100 Plus
3R 32079331 3R 4228479..4228546 847..914 314 97.1 Plus
Blast to na_te.dros performed on 2015-02-10 18:04:54 has no hits.

BO09250.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:42 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 450..1347 16..913 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:41 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 450..1347 16..913 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:53 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 545..1439 19..913 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:58 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 545..1439 19..913 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:58 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4227538..4228092 19..573 100 <- Plus
3R 4228148..4228421 574..847 100 <- Plus
3R 4228480..4228545 848..913 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:53 Download gff for BO09250.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53260..53814 19..573 100 <- Plus
arm_3R 53870..54143 574..847 100 <- Plus
arm_3R 54202..54267 848..913 96   Plus

BO09250.5prime Sequence

876 bp (816 high quality bases) assembled on 2006-01-17

> BO09250.5prime
GAAGTTATCAGTCGACATGGCAACGGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGT

BO09250.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18143-PA 1347 CG18143-RA 1..860 17..876 4275 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..955 17..876 4285 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 480 99 Minus
3R 32079331 3R 4228022..4228094 876..804 365 100 Minus
Blast to na_te.dros performed on 2015-02-02 09:19:24 has no hits.

BO09250.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:43 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:42 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18143-PA 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:50 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..955 7..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:52 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 87..955 7..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:52 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4228480..4228634 377..531 100 <- Minus
3R 4228022..4228092 806..876 100 <- Minus
3R 4228148..4228421 532..805 100 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229152 7..115 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:50 Download gff for BO09250.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 53744..53814 806..876 100 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus
arm_3R 54767..54874 7..115 95   Minus

BO09250.complete Sequence

1378 bp assembled on 2011-06-28

GenBank Submission: KX796053

> BO09250.complete
GAAGTTATCAGTCGACATGGCAACGGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACAC
AATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGGCG
TGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGATT
CAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTTTT
TAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTTCA
ATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGGGT
GGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTAGG
GAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACCCT
TGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAGGC
AGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAACA
GGGATACCAAGCAAGCTTTCTAGACCAT

BO09250.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:48
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1347 CG18143-PA 1..1344 17..1360 6705 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-RA 1590 CG18143-RA 96..1439 17..1360 6705 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4227538..4228094 1360..804 2785 100 Minus
3R 32079331 3R 4228148..4228421 805..532 1370 100 Minus
3R 32079331 3R 4228727..4228990 377..114 1320 100 Minus
3R 32079331 3R 4228479..4228634 532..377 780 100 Minus
3R 32079331 3R 4229045..4229143 115..17 480 99 Minus
Blast to na_te.dros performed on 2014-11-26 16:07:47 has no hits.

BO09250.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:09 Download gff for BO09250.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 107..1450 17..1362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:00 Download gff for BO09250.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1439 17..1362 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:52 Download gff for BO09250.complete
Subject Subject Range Query Range Percent Splice Strand
DhpD-RA 96..1439 17..1362 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:52 Download gff for BO09250.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4227535..4228092 806..1362 99 <- Minus
3R 4228148..4228421 532..805 100 <- Minus
3R 4228480..4228634 377..531 100 <- Minus
3R 4228728..4228988 116..376 100 <- Minus
3R 4229045..4229143 17..115 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:00 Download gff for BO09250.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 54767..54865 17..115 98   Minus
arm_3R 53257..53814 806..1362 99 <- Minus
arm_3R 53870..54143 532..805 100 <- Minus
arm_3R 54202..54356 377..531 100 <- Minus
arm_3R 54450..54710 116..376 100 <- Minus

BO09250.pep Sequence

Translation from 16 to 1378

> BO09250.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQAS
FLDH

BO09250.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
DhpD-PA 448 CG18143-PA 1..448 1..448 2302 100 Plus