Clone Sequence Records
BO09250.3prime Sequence
914 bp (836 high quality bases) assembled on 2006-01-18
> BO09250.3prime
ATGGTCTAGAAAGCTTGCTTGGTATCCCTGTTTAATACGCTTGCCGGCCA
CGAAAACTTCTACAATGTTGCGGTCACTGCCTGTGTAAATGAACTTCTCC
ACCAGCTCATCGACGCTCAGCCTCCGCAAGGGTTTATCGACGACGCTGAC
ATCCACCAACAAAGCATCGAAATCCTTCCCTAGAGCAAAGTTTCCGGTCA
AGTGATCGAGGGACAGCGCTTTGGCGCCACCCAAAGTGGCCAAGTAGAGC
GCCTGCTTGTACTTCAACTGATGGTAATTGAAATCTTGTGTTTTGGACAC
ACCCGTCCCGCGGATGTTCTGCTTCTTAAAAAAGTCTAAGTGTTTTGACA
CGTCCAATGCGCGGAGCAGAACGTCCTGAATCGAGACGGAGTTTCCCCCC
GAAACGTCTGTGCCGAGACCTACGCTCACGCCGCCGCTCACCAGCCGTTG
GACATCGCACAGACCGGAGCTTAGCATTGTGTTCGAAGTGGGACAGTGGG
CTACCGAGCACCCCCGGACTTTAAGAAGTGCCACCTCGTCGTCCTCCAGA
TGCACGCCGTGAGCCAGTACAGTCTTATTCGTTAGCAGTCCAGCCTCGTC
GTATGCTCCGGCATAGCTGGTCTTAAATATCCCCTTTACCATCTCGATCT
CTTCCAGGTTTTCGCTGATGTGACTCTGGATATGCAGGTCAAATCGCTTT
GCTATATCGCCCAGACTCTTTAGCAGCTCCTTGCTGCAGCTAAGGGCAAA
GCGGGGCGTAATCGTTGGCATCACCATCGGGCTGCCGAGCTTCCGCACGC
CCTCCACGAAAGCCAGGGTTGCACTGACCGACTCTTCCGCAGTCTCCACG
TAAAACTCGGGGCTGTTGCAGTTGAAGCAGACCTTGNCTATCAGTGCCCG
CTGGCCTTGACGCA
BO09250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18143-PA | 1347 | CG18143-RA | 449..1344 | 914..19 | 4436 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 544..1439 | 914..19 | 4454 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4227538..4228094 | 19..575 | 2785 | 100 | Plus |
3R | 32079331 | 3R | 4228148..4228421 | 574..847 | 1370 | 100 | Plus |
3R | 32079331 | 3R | 4228479..4228546 | 847..914 | 314 | 97.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:04:54 has no hits.
BO09250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:42 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 450..1347 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:41 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 450..1347 | 16..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:18:53 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 545..1439 | 19..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:58 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 545..1439 | 19..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:58 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4227538..4228092 | 19..573 | 100 | <- | Plus |
3R | 4228148..4228421 | 574..847 | 100 | <- | Plus |
3R | 4228480..4228545 | 848..913 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:18:53 Download gff for
BO09250.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 53260..53814 | 19..573 | 100 | <- | Plus |
arm_3R | 53870..54143 | 574..847 | 100 | <- | Plus |
arm_3R | 54202..54267 | 848..913 | 96 | | Plus |
BO09250.5prime Sequence
876 bp (816 high quality bases) assembled on 2006-01-17
> BO09250.5prime
GAAGTTATCAGTCGACATGGCAACGGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGT
BO09250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18143-PA | 1347 | CG18143-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 96..955 | 17..876 | 4285 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4228148..4228421 | 805..532 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 4228727..4228990 | 377..114 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 4228479..4228634 | 532..377 | 780 | 100 | Minus |
3R | 32079331 | 3R | 4229045..4229143 | 115..17 | 480 | 99 | Minus |
3R | 32079331 | 3R | 4228022..4228094 | 876..804 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 09:19:24 has no hits.
BO09250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:43 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:42 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18143-PA | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:22:50 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 87..955 | 7..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:29:52 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 87..955 | 7..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:29:52 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4228480..4228634 | 377..531 | 100 | <- | Minus |
3R | 4228022..4228092 | 806..876 | 100 | <- | Minus |
3R | 4228148..4228421 | 532..805 | 100 | <- | Minus |
3R | 4228728..4228988 | 116..376 | 100 | <- | Minus |
3R | 4229045..4229152 | 7..115 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:22:50 Download gff for
BO09250.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 53744..53814 | 806..876 | 100 | <- | Minus |
arm_3R | 53870..54143 | 532..805 | 100 | <- | Minus |
arm_3R | 54202..54356 | 377..531 | 100 | <- | Minus |
arm_3R | 54450..54710 | 116..376 | 100 | <- | Minus |
arm_3R | 54767..54874 | 7..115 | 95 | | Minus |
BO09250.complete Sequence
1378 bp assembled on 2011-06-28
GenBank Submission: KX796053
> BO09250.complete
GAAGTTATCAGTCGACATGGCAACGGTGTTTCTTGGAACTGTCGTGCACA
CCAAGTCGTTCAGCGAGTTTGAGTCCTTTGAAGGAGGATTCCTGGCAGTG
GACGACGCTGGCAAGATAATAGGAGTGGGACAAGACTACCATGCGTGGGC
AAGCAGCAATCCGGCCCACGCCAAGGGTCTGACCGAGGTTCACCTGTCGG
ACTACCAGTTCCTCATGCCGGGCTTCGTCGACTGCCACATACACGCCCCG
CAGTTTGCGCAACTGGGACTGGGACTAGACATGCCTCTTCTGGACTGGTT
GAACACATACACTTTCCCGCTGGAGGCGAAGTTTTCCAACCACCAATACG
CCCAGCAGGTCTACCAGGGTGTGGTCGAAGCAACACTGCGGTGCGGAACC
ACTCTGGCGTCCTATTTCGCCACCAACCATCTGGAGTCAACGCTGACCTT
GGCGCGGGAGGCGGTGCGTCAAGGCCAGCGGGCACTGATAGGCAAGGTCT
GCTCCAACTGCAACAGCCCCGAGTTTTACGTGGAGACTGCGGAAGAGTCG
GTCAGTGCAACCCTGGCTTTCGTGGAGGGCGTGCGGAAGCTCGGCAGCCC
GATGGTGATGCCAACGATTACGCCCCGCTTTGCCCTTAGCTGCAGCAAGG
AGCTGCTAAAGAGTCTGGGCGATATAGCAAAGCGATTTGACCTGCATATC
CAGAGTCACATCAGCGAAAACCTGGAAGAGATCGAGATGGTAAAGGGGAT
ATTTAAGACCAGCTATGCCGGAGCATACGACGAGGCTGGACTGCTAACGA
ATAAGACTGTACTGGCTCACGGCGTGCATCTGGAGGACGACGAGGTGGCA
CTTCTTAAAGTCCGGGGGTGCTCGGTAGCCCACTGTCCCACTTCGAACAC
AATGCTAAGCTCCGGTCTGTGCGATGTCCAACGGCTGGTGAGCGGCGGCG
TGAGCGTAGGTCTCGGCACAGACGTTTCGGGGGGAAACTCCGTCTCGATT
CAGGACGTTCTGCTCCGCGCATTGGACGTGTCAAAACACTTAGACTTTTT
TAAGAAGCAGAACATCCGCGGGACGGGTGTGTCCAAAACACAAGATTTCA
ATTACCATCAGTTGAAGTACAAGCAGGCGCTCTACTTGGCCACTTTGGGT
GGCGCCAAAGCGCTGTCCCTCGATCACTTGACCGGAAACTTTGCTCTAGG
GAAGGATTTCGATGCTTTGTTGGTGGATGTCAGCGTCGTCGATAAACCCT
TGCGGAGGCTGAGCGTCGATGAGCTGGTGGAGAAGTTCATTTACACAGGC
AGTGACCGCAACATTGTAGAAGTTTTCGTGGCCGGCAAGCGTATTAAACA
GGGATACCAAGCAAGCTTTCTAGACCAT
BO09250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1347 | CG18143-PA | 1..1344 | 17..1360 | 6705 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-RA | 1590 | CG18143-RA | 96..1439 | 17..1360 | 6705 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4227538..4228094 | 1360..804 | 2785 | 100 | Minus |
3R | 32079331 | 3R | 4228148..4228421 | 805..532 | 1370 | 100 | Minus |
3R | 32079331 | 3R | 4228727..4228990 | 377..114 | 1320 | 100 | Minus |
3R | 32079331 | 3R | 4228479..4228634 | 532..377 | 780 | 100 | Minus |
3R | 32079331 | 3R | 4229045..4229143 | 115..17 | 480 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:07:47 has no hits.
BO09250.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:09 Download gff for
BO09250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 107..1450 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:00 Download gff for
BO09250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 96..1439 | 17..1362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:52 Download gff for
BO09250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
DhpD-RA | 96..1439 | 17..1362 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:52 Download gff for
BO09250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4227535..4228092 | 806..1362 | 99 | <- | Minus |
3R | 4228148..4228421 | 532..805 | 100 | <- | Minus |
3R | 4228480..4228634 | 377..531 | 100 | <- | Minus |
3R | 4228728..4228988 | 116..376 | 100 | <- | Minus |
3R | 4229045..4229143 | 17..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:00 Download gff for
BO09250.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 54767..54865 | 17..115 | 98 | | Minus |
arm_3R | 53257..53814 | 806..1362 | 99 | <- | Minus |
arm_3R | 53870..54143 | 532..805 | 100 | <- | Minus |
arm_3R | 54202..54356 | 377..531 | 100 | <- | Minus |
arm_3R | 54450..54710 | 116..376 | 100 | <- | Minus |
BO09250.pep Sequence
Translation from 16 to 1378
> BO09250.pep
MATVFLGTVVHTKSFSEFESFEGGFLAVDDAGKIIGVGQDYHAWASSNPA
HAKGLTEVHLSDYQFLMPGFVDCHIHAPQFAQLGLGLDMPLLDWLNTYTF
PLEAKFSNHQYAQQVYQGVVEATLRCGTTLASYFATNHLESTLTLAREAV
RQGQRALIGKVCSNCNSPEFYVETAEESVSATLAFVEGVRKLGSPMVMPT
ITPRFALSCSKELLKSLGDIAKRFDLHIQSHISENLEEIEMVKGIFKTSY
AGAYDEAGLLTNKTVLAHGVHLEDDEVALLKVRGCSVAHCPTSNTMLSSG
LCDVQRLVSGGVSVGLGTDVSGGNSVSIQDVLLRALDVSKHLDFFKKQNI
RGTGVSKTQDFNYHQLKYKQALYLATLGGAKALSLDHLTGNFALGKDFDA
LLVDVSVVDKPLRRLSVDELVEKFIYTGSDRNIVEVFVAGKRIKQGYQAS
FLDH
BO09250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
DhpD-PA | 448 | CG18143-PA | 1..448 | 1..448 | 2302 | 100 | Plus |