Clone BO09251 Report

Search the DGRC for BO09251

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptCG10107-RB
Protein status:BO09251.pep: validated full length
Sequenced Size:2167

Clone Sequence Records

BO09251.3prime Sequence

886 bp (814 high quality bases) assembled on 2006-01-18

> BO09251.3prime
ATGGTCTAGAAAGCTTGCCGGCTCTATCTTCCGGATCTTCAGTCCACCGC
TGGGCCCACGCGGCCCCAAATGAGCGACTCCGGACGAAACGCCCGTCGTC
GTTGCGGCCGCCGTGCTCACCAGCTGGGGTATCAGTGCACCGCCATTACT
GCTAGCCTCGCCGTTTCCATTGGTCGGACTTGAGACGGCTCCGTTGTGCA
GGCGCCGCTTCAGCACGAATCTTTTACCCGTGGGCGCTGCCGCAGTCGTG
GACGCAGGTGCTAACGCGGCGGTTTTCCCTGCCAACGCTGGCTCCTCGTT
CACGGGGTCCACTTCCATGTCGGTGCCGGCATTGTTTTCATCATGCATTT
CACTAGCTGGATCTTCGTCGTCATGGCCCTCCTCCTCCTCAAACTCGGCA
CTTTCCGTGTCCTCTGGATACTCCACCAACTGTCCATTCAGCGTTGGGAA
CTCGATCACTGGCAGTATGAGGCGTTGCTGCTGATTGCCCTCGTCCATCA
GCTGCTGGATGAGATTGGCAATGTCCTCGCGCTTTTTCGTCACTGTGAGG
AAGTCAAACCAGTTGGTCAGCTGCTTGATGGGCAGTCTGTAGTCTCTGAT
TGGCTCGCCGAAGAATTGCTCCACATACTGCAGCAGATACAGGCCGCAAT
CGGTGAAGTTGTTCTGCTGCGGCACCTTGACGCAGTGGCCCGGCATATTG
TCCTTGTTGAAGACGTGCGCCTGCGCATCCGGCTTCTTTACCCGGTACTC
GCATGTGAGATAATCTCGCAGTGTGGCCACCACGCGGCTACGCGATGCTC
CCGCCAGGGAATCAAAGATAAGGATTAAAGGTTGCTTTACGGCGGGCACA
TCATCGGATGCAATATTCCTCGCTGGACCGGTGGCT

BO09251.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10107-PA 5502 CG10107-RA 4632..5499 886..19 4340 100 Minus
CG10107-PB 2136 CG10107-RB 1266..2133 886..19 4340 100 Minus
CG10107-PC 5502 CG10107-RC 4632..5499 886..19 4340 100 Minus
CG12717-PA 2046 CG12717-RA 1714..1755 651..610 160 95.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:29:43
Subject Length Description Subject Range Query Range Score Percent Strand
velo-RD 2490 CG10107-RD 1407..2274 886..19 4340 100 Minus
velo-RC 6333 CG10107-RC 5250..6117 886..19 4340 100 Minus
velo-RB 2691 CG10107-RB 1608..2475 886..19 4340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6745031..6745571 346..886 2705 100 Plus
3L 28110227 3L 6744642..6744969 19..346 1640 100 Plus
X 23542271 X 12761456..12761756 477..777 560 79.1 Plus
Y 3667352 Y 3266245..3266526 777..496 555 79.8 Minus
Blast to na_te.dros performed on 2015-02-06 10:29:39 has no hits.

BO09251.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:44 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10107-PB 1266..2136 18..886 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:43 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10107-PC 4632..5502 18..886 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:28:12 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
velo-RA 4769..5640 13..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:38:08 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
velo-RB 1608..2479 13..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:38:08 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6744638..6744968 13..345 99 <- Plus
3L 6745031..6745571 346..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:28:12 Download gff for BO09251.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6737738..6738068 13..345 99 <- Plus
arm_3L 6738131..6738671 346..886 100   Plus

BO09251.5prime Sequence

972 bp (850 high quality bases) assembled on 2006-01-17

> BO09251.5prime
GAAGTTATCAGTCGACATGAACGATGAAGATTTCTCCCGTGGCGATGTTA
GAGACTTGTCGGATATACCCGAAGCGGATCAATTTTCCGCCTCCTTGAAA
TGCAGCTGCGTGCGTCTGGTGCCCTACAGATTCGAGATTACCGAGCCGGT
ATGCTTCACCACGAAGGGCGTTCGCATTGCTGGCATCCTGAAGGACAAGG
ACGAGAAGTTCGAGCTGAACATCCACAAACAGGAGGTGATCAAGGTGATA
GCCCACTTCGGCAACGTTGAGCCCGCCCAGCCACTGGTCACGCTATATCT
CCTCAAGACGTGTGCCGAATACGTAAAGAACCAGCTCAAGCTGCCCGACG
ATCAGCATCACGAACATACCGGCTTCAAGACGCACAGCTATCACACTCGC
CGTCTGATCCTGTTGTTCGACAGCATATCCGTGTCCGCCCGTGGTAATAT
CAAGTCTATGTTCAGTTGTGTAGACGAGATATCCTCGACAGATGCCGCCG
AGATTCTCGAGAGGATCGCGGACTCCGATCGCAAGACGCAGGACAAGAGC
TCGCAGCCACCGCCTCGCCAACTGAGAGCAGACGAGCAGGTTAGTCTGCT
GATGTATCCGCCGAAGGGAACGGGTGGCCTGTGCATACGCATGGAGGACT
TCGTCTGCCTCACAAAGGAGTCCTACCTCAACGACATCATCATTGACTTC
TATCTGCTCTGGCTGAGGAACACGCTGATTCCGGAGCCTCAACGCGAAAG
AACGCATATCTTCAGCACATTCTTTTACAAGAGACTCACAACGCTAACGC
GGCCAGCGGACATGAAGCAGACGGCAGCACAGAAGCGACACGCCAGGGTG
CAAAAGTGGACCAGGGGTGTGGACATCTTCGATAAGGATTTCATTATAGT
GCCCATCAATGAGCAGTCGCATTGGTTCCTCGCCATCATTTGCTACCCGA
ACTTAAAAGGACCCGTCACGTT

BO09251.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10107-PB 2136 CG10107-RB 1..956 17..972 4755 99.8 Plus
CG10107-PA 5502 CG10107-RA 3377..4322 27..972 4705 99.8 Plus
CG10107-PC 5502 CG10107-RC 3377..4322 27..972 4705 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 09:46:16
Subject Length Description Subject Range Query Range Score Percent Strand
velo-RD 2490 CG10107-RD 142..1097 17..972 4765 99.9 Plus
velo-RB 2691 CG10107-RB 343..1298 17..972 4765 99.9 Plus
velo-RC 6333 CG10107-RC 3995..4940 27..972 4715 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 09:46:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6745881..6746487 972..366 3020 99.8 Minus
3L 28110227 3L 6746562..6746779 365..148 1090 100 Minus
3L 28110227 3L 6746868..6746991 151..28 620 100 Minus
Blast to na_te.dros performed on 2015-02-09 09:46:12 has no hits.

BO09251.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:45 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10107-PB 1..956 17..972 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:44 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10107-PB 1..956 17..972 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:23:03 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
velo-RB 192..1147 17..972 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:52:27 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
velo-RB 343..1298 17..972 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:52:27 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6745881..6746487 366..972 99 <- Minus
3L 6746562..6746778 149..365 100 <- Minus
3L 6746871..6747000 20..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:23:03 Download gff for BO09251.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6738981..6739587 366..972 99 <- Minus
arm_3L 6739662..6739878 149..365 100 <- Minus
arm_3L 6739971..6740100 20..148 97   Minus

BO09251.complete Sequence

2167 bp (2167 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631445

> BO09251.complete
GAAGTTATCAGTCGACATGAACGATGAAGATTTCTCCCGTGGCGATGTTA
GAGACTTGTCGGATATACCCGAAGCGGATCAATTTTCCGCCTCCTTGAAA
TGCAGCTGCGTGCGTCTGGTGCCCTACAGATTCGAGATTACCGAGCCGGT
ATGCTTCACCACGAAGGGCGTTCGCATTGCTGGCATCCTGAAGGACAAGG
ACGAGAAGTTCGAGCTGAACATCCACAAACAGGAGGTGATCAAGGTGATA
GCCCACTTCGGCAACGTTGAGCCCGCCCAGCCACTGGTCACGCTATATCT
CCTCAAGACGTGTGCCGAATACGTAAAGAACCAGCTCAAGCTGCCCGACG
ATCAGCATCACGAACATACCGGCTTCAAGACGCACAGCTATCACACTCGC
CGTCTGATCCTGTTGTTCGACAGCATATCCGTGTCCGCCCGTGGTAATAT
CAAGTCTATGTTCAGTTGTGTAGACGAGATATCCTCGACAGATGCCGCCG
AGATTCTCGAGAGGATCGCGGACTCCGATCGCAAGACGCAGGACAAGAGC
TCGCAGCCACCGCCTCGCCAACTGAGAGCAGACGAGCAGGTTAGTCTGCT
GATGTATCCGCCGAAGGGAACGGGTGGCCTGTGCATACGCATGGAGGACT
TCGTCTGCCTCACAAAGGAGTCCTACCTCAACGACATCATCATTGACTTC
TATCTGCTCTGGCTGAGGAACACGCTGATTCCGGAGCCTCAACGCGAAAG
AACGCATATCTTCAGCACATTCTTTTACAAGAGACTCACAACGCTAACGC
GGCCAGCGGACATGAAGCAGACGGCAGCACAGAAGCGACACGCCAGGGTG
CAAAAGTGGACCAAGGGTGTGGACATCTTCGATAAGGATTTCATTATAGT
GCCCATCAATGAGCAGTCGCATTGGTTCCTCGCCATCATTTGCTACCCGA
ACTTAAAAGGACCCGTCACGTTCGATACGAACCAGCCTGTAGAGCCGCAG
CAGTTGAAGCGCCCTCGAGGCAAGAAGGTGGCCCTGCAAATTGGTAACAC
CACCATAACCCCGCTGACGAAAAGGGCAGAGGGAGGACAGCTTCCAGCGG
CTCTGACGGCAGAGAACGTGTGTCGGATAGCAGACGATGAGAGCGAAAGG
GATGAGGCCGAAGGCGATGAGAGCGACATGGCCTCGGAGGATAGTGAAAA
CTCGAATTCGGCCAAGGAACCAGCGGCCACGCCCACCTCCACGACAGCCA
GCACCCCCAGTCTATCCAGTTCGCAGCCCACAGCCACCGGTCCAGCGAGG
AATATTGCATCCGATGATGTGCCCGCCGTAAAGCAACCTTTAATCCTTAT
CTTTGATTCCCTGGCGGGAGCATCGCGTAGCCGCGTGGTGGCCACACTGC
GAGATTATCTCACATGCGAGTACCGGGTAAAGAAGCCGGATGCGCAGGCG
CACGTCTTCAACAAGGACAATATGCCGGGCCACTGCGTCAAGGTGCCGCA
GCAGAACAACTTCACCGATTGCGGCCTGTATCTGCTGCAGTATGTGGAGC
AATTCTTCGGCGAGCCAATCAGAGACTACAGACTGCCCATCAAGCAGCTG
ACCAACTGGTTTGACTTCCTCACAGTGACGAAAAAGCGCGAGGACATTGC
CAATCTCATCCAGCAGCTGATGGACGAGGGCAATCAGCAGCAACGCCTCA
TACTGCCAGTGATCGAGTTCCCAACGCTGAATGGACAGTTGGTGGAGTAT
CCAGAGGACACGGAAAGTGCCGAGTTTGAGGAGGAGGAGGGCCATGACGA
CGAAGATCCAGCTAGTGAAATGCATGATGAAAACAATGCCGGCACCGACA
TGGAAGTGGACCCCGTGAACGAGGAGCCAGCGTTGGCAGGGAAAACCGCC
GCGTTAGCACCTGCGTCCACGACTGCGGCAGCGCCCACGGGTAAAAGATT
CGTGCTGAAGCGGCGCCTGCACAACGGAGCCGTCTCAAGTCCGACCAATG
GAAACGGCGAGGCTAGCAGTAATGGCGGTGCACTGATACCCCAGCTGGTG
AGCACGGCGGCCGCAACGACGACGGGCGTTTCGTCCGGAGTCGCTCATTT
GGGGCCGCGTGGGCCCAGCGGTGGACTGAAGATCCGGAAGATAGAGCCGG
CAAGCTTTCTAGACCAT

BO09251.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
velo-RD 2136 CG10107-PD 1..2133 17..2149 10665 100 Plus
velo-RB 2136 CG10107-PB 1..2133 17..2149 10665 100 Plus
velo-RC 5502 CG10107-PC 3377..5499 27..2149 10615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
velo-RD 2490 CG10107-RD 142..2274 17..2149 10665 100 Plus
velo-RB 2691 CG10107-RB 343..2475 17..2149 10665 100 Plus
velo-RC 6333 CG10107-RC 3995..6117 27..2149 10615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6745031..6746487 1822..366 7285 100 Minus
3L 28110227 3L 6744642..6744969 2149..1822 1640 100 Minus
3L 28110227 3L 6746562..6746779 365..148 1090 100 Minus
3L 28110227 3L 6746868..6746991 151..28 620 100 Minus
X 23542271 X 12761456..12761756 1691..1391 560 79.1 Minus
Y 3667352 Y 3266245..3266526 1391..1672 555 79.8 Plus
Y 3667352 Y 3236057..3236338 1672..1391 540 79.4 Minus
Ymm 880023 Ymm 328317..328617 1691..1391 500 77.7 Minus
Y 3667352 Y 3212426..3212677 1440..1691 495 79.8 Plus
Ymm 880023 Ymm 542331..542582 1440..1691 495 79.8 Plus
Y 3667352 Y 3241683..3241983 1391..1691 485 77.4 Plus
Ymm 880023 Ymm 315982..316282 1691..1391 485 77.4 Minus
Ymm 880023 Ymm 324243..324543 1691..1391 485 77.4 Minus
Ymm 880023 Ymm 332390..332690 1691..1391 485 77.4 Minus
Ymm 880023 Ymm 336793..337046 1391..1644 475 79.1 Plus
U 3151297 U 1283661..1283914 1391..1644 475 79.1 Plus
Ymm 880023 Ymm 320921..321221 1691..1391 470 77.1 Minus
Y 3667352 Y 3093502..3093764 1429..1691 445 77.9 Plus
Y 3667352 Y 3203934..3204196 1691..1429 445 77.9 Minus
Y 3667352 Y 3229477..3229737 1691..1429 440 78.7 Minus
U 3151297 U 2461026..2461207 1672..1491 430 82.4 Minus
Ymm 880023 Ymm 341674..341934 1429..1691 425 78.3 Plus
Ymm 880023 Ymm 318944..319206 1691..1429 415 77.2 Minus
Y 3667352 Y 3273194..3273470 1391..1668 395 77 Plus
Y 3667352 Y 3113738..3114037 1691..1391 375 75.7 Minus
Y 3667352 Y 3137670..3137969 1691..1391 375 75.7 Minus
Y 3667352 Y 3165009..3165308 1391..1691 375 75.7 Plus
Y 3667352 Y 3185328..3185627 1391..1691 375 75.7 Plus
Y 3667352 Y 3259308..3259607 1691..1391 375 75.7 Minus
Y 3667352 Y 3191268..3191434 1557..1391 355 80.8 Minus
Ymm 880023 Ymm 653472..653715 1691..1448 330 77.6 Minus
Y 3667352 Y 3108122..3108257 1491..1626 290 80.9 Plus
Y 3667352 Y 3061153..3061306 1538..1691 275 78.6 Plus
Ymm 880023 Ymm 339681..339834 1538..1691 275 78.6 Plus
Blast to na_te.dros performed on 2014-11-27 16:21:35 has no hits.

BO09251.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:27 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
CG10107-RB 1..2136 17..2150 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:26 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
CG10107-RB 192..2328 17..2155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:45 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
velo-RB 192..2324 17..2151 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:27 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
CG10107-RB 192..2328 17..2155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:45 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
velo-RB 343..2475 17..2151 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:45 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6744638..6744968 1823..2151 99 <- Minus
3L 6745031..6746487 366..1822 100 <- Minus
3L 6746562..6746778 149..365 100 <- Minus
3L 6746871..6747000 20..148 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:45 Download gff for BO09251.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6737738..6738068 1823..2151 99 <- Minus
arm_3L 6738131..6739587 366..1822 100 <- Minus
arm_3L 6739662..6739878 149..365 100 <- Minus
arm_3L 6739971..6740100 20..148 97   Minus

BO09251.pep Sequence

Translation from 16 to 2167

> BO09251.pep
MNDEDFSRGDVRDLSDIPEADQFSASLKCSCVRLVPYRFEITEPVCFTTK
GVRIAGILKDKDEKFELNIHKQEVIKVIAHFGNVEPAQPLVTLYLLKTCA
EYVKNQLKLPDDQHHEHTGFKTHSYHTRRLILLFDSISVSARGNIKSMFS
CVDEISSTDAAEILERIADSDRKTQDKSSQPPPRQLRADEQVSLLMYPPK
GTGGLCIRMEDFVCLTKESYLNDIIIDFYLLWLRNTLIPEPQRERTHIFS
TFFYKRLTTLTRPADMKQTAAQKRHARVQKWTKGVDIFDKDFIIVPINEQ
SHWFLAIICYPNLKGPVTFDTNQPVEPQQLKRPRGKKVALQIGNTTITPL
TKRAEGGQLPAALTAENVCRIADDESERDEAEGDESDMASEDSENSNSAK
EPAATPTSTTASTPSLSSSQPTATGPARNIASDDVPAVKQPLILIFDSLA
GASRSRVVATLRDYLTCEYRVKKPDAQAHVFNKDNMPGHCVKVPQQNNFT
DCGLYLLQYVEQFFGEPIRDYRLPIKQLTNWFDFLTVTKKREDIANLIQQ
LMDEGNQQQRLILPVIEFPTLNGQLVEYPEDTESAEFEEEEGHDDEDPAS
EMHDENNAGTDMEVDPVNEEPALAGKTAALAPASTTAAAPTGKRFVLKRR
LHNGAVSSPTNGNGEASSNGGALIPQLVSTAAATTTGVSSGVAHLGPRGP
SGGLKIRKIEPASFLDH

BO09251.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
velo-PD 711 CG10107-PD 1..711 1..711 3700 100 Plus
velo-PB 711 CG10107-PB 1..711 1..711 3700 100 Plus
velo-PC 1833 CG10107-PC 1126..1833 4..711 3679 99.9 Plus
velo-PA 1833 CG10107-PA 1126..1833 4..711 3679 99.9 Plus
CG12717-PB 681 CG12717-PB 504..660 432..590 595 73.6 Plus