Clone BO09252 Report

Search the DGRC for BO09252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG6401-RA
Protein status:BO09252.pep: validated full length
Sequenced Size:1471

Clone Sequence Records

BO09252.3prime Sequence

948 bp (900 high quality bases) assembled on 2006-01-18

> BO09252.3prime
ATGGTCTAGAAAGCTTGCGCTGGCCCTACGTTGTACATCCTGCGCTATCT
CTACGTGTTTCCGAGGACGCCAAAGCTCCAGCAAGCGCATTAAGAAGTGG
GCCACAACGAAGAACACCAGAAACCAGGATCCGTGCTGCCACACCGCAAA
CACCAGCTCGCTAGTGGTGAAAGAGCGTTCATTTAAAACGCGATCGTACA
CCTTTACTGTGCGAAGGGCAACATCCTCCCAATTGTAAAGCGTTTCCACC
AACTCATTACATCTATATGGACACATTACGGGCTCTGTAGAGCTGTTCTG
ATCCGCAGGAGGAGCAGAGACTGCTGGCAGTTGTGTAGGAGAGATAGGAG
TATCGACTTTCCTGCGACGTCGCCGCTTAACCTTTCCATTAGCGTCCGAG
GCCAAATGCCCATTGCCAACTGATGGACTAACCTTAAAGGAACTCTTTCG
ATGACGGTCGATGGCAATTAGAATCGCTGCGTAAATGGCATCAATTTCGG
GCTCTGCCAGCAGTATAAGACTCTTGGGTAGCACTTCGGGAATTCCGCCC
ACACTGGTGGACACCACCTGCAGTCCACAGGAAGCCGCCTCAACGATGGC
CATGCAGTAGGCCTCAGTCAGTGAGGTATTCAAAAAGATGTGGCCACGCA
CCAGGAAATCGCGAACCCTGTTATGCTCCACGGCGCCCACCATTTGAACC
CTTTCCTGCATATTGGTCTTTTCGCGAATCTCCTCCAGCAGATCACGCTT
AGGTCCATCGCCCACAATGATAAAGTTTATGTTGGGAGTGTTTTTGAACC
GTGGAATGATGCCAGCTAGCAAATCAATGCCTTTGCGGTAGACAAGACGG
GAGGCCACTACAATGTTGATTATATCATTGCTCGGACGCTGTTGAGGATC
GGGAGTAAACAGGGCAGTGTCGACTGCTTTGGGAATGACGGAAACTCG

BO09252.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PA 1440 CG6401-RA 508..1437 948..19 4625 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 644..1573 948..19 4635 99.9 Minus
CG6401-RA 1642 CG6401-RA 644..1573 948..19 4635 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17737921..17738771 19..869 4255 100 Plus
2R 25286936 2R 17738828..17738906 870..948 380 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 18:29:36 has no hits.

BO09252.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:46 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 508..1440 18..948 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:45 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 508..1440 18..948 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:59 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 644..1579 15..948 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:12 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 644..1579 15..948 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:12 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17737915..17738771 15..869 99 <- Plus
2R 17738828..17738906 870..948 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:59 Download gff for BO09252.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13625420..13626276 15..869 99 <- Plus
arm_2R 13626333..13626411 870..948 98   Plus

BO09252.5prime Sequence

825 bp (762 high quality bases) assembled on 2006-01-18

> BO09252.5prime
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCG

BO09252.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PA 1440 CG6401-RA 1..809 17..825 4045 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 137..945 17..825 4045 100 Plus
CG6401-RA 1642 CG6401-RA 137..945 17..825 4045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17739133..17739380 364..117 1240 100 Minus
2R 25286936 2R 17738828..17739067 602..363 1200 100 Minus
2R 25286936 2R 17738549..17738771 825..603 1115 100 Minus
2R 25286936 2R 3384077..3384249 106..278 610 90.2 Plus
2R 25286936 2R 17739448..17739549 118..17 510 100 Minus
2R 25286936 2R 3384246..3384349 314..417 265 83.7 Plus
Blast to na_te.dros performed on 2015-02-10 21:38:03 has no hits.

BO09252.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:47 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:47 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-PA 1..809 17..825 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:30 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 129..945 10..825 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:05 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 129..945 10..825 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:05 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17738828..17739065 365..602 100 <- Minus
2R 17739133..17739378 119..364 100 <- Minus
2R 17739448..17739557 10..118 96   Minus
2R 17738549..17738771 603..825 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:30 Download gff for BO09252.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13626638..13626883 119..364 100 <- Minus
arm_2R 13626953..13627062 10..118 96   Minus
arm_2R 13626054..13626276 603..825 100 <- Minus
arm_2R 13626333..13626570 365..602 100 <- Minus

BO09252.complete Sequence

1471 bp (1471 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631446

> BO09252.complete
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGAGGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCAGGTGGTGTCCACCAGTGTGGGCGGAATTCCCGAAGTGCTACCCAAGA
GTCTTATACTGCTGGCAGAGCCCGAAATTGATGCCATTTACGCAGCGATT
CTAATTGCCATCGACCGTCATCGAAAGAGTTCCTTTAAGGTTAGTCCATC
AGTTGGCAATGGGCATTTGGCCTCGGACGCTAATGGAAAGGTTAAGCGGC
GACGTCGCAGGAAAGTCGATACTCCTATCTCTCCTACACAACTGCCAGCA
GTCTCTGCTCCTCCTGCGGATCAGAACAGCTCTACAGAGCCCGTAATGTG
TCCATATAGATGTAATGAGTTGGTGGAAACGCTTTACAATTGGGAGGATG
TTGCCCTTCGCACAGTAAAGGTGTACGATCGCGTTTTAAATGAACGCTCT
TTCACCACTAGCGAGCTGGTGTTTGCGGTGTGGCAGCACGGATCCTGGTT
TCTGGTGTTCTTCGTTGTGGCCCACTTCTTAATGCGCTTGCTGGAGCTTT
GGCGTCCTCGGAAACACGTAGAGATAGCGCAGGATGTACAACGTAGGGCC
AGCGCAAGCTTTCTAGACCAT

BO09252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1440 CG6401-PB 1..1437 17..1453 7185 100 Plus
CG6401-RA 1440 CG6401-PA 1..1437 17..1453 7185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-RB 1872 CG6401-RB 137..1573 17..1453 7185 100 Plus
CG6401-RA 1642 CG6401-RA 137..1573 17..1453 7185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17737921..17738771 1453..603 4255 100 Minus
2R 25286936 2R 17739133..17739380 364..117 1240 100 Minus
2R 25286936 2R 17738828..17739067 602..363 1200 100 Minus
2R 25286936 2R 3384077..3384249 106..278 610 90.2 Plus
2R 25286936 2R 17739448..17739549 118..17 510 100 Minus
2R 25286936 2R 3384246..3384349 314..417 265 83.7 Plus
Blast to na_te.dros performed on 2014-11-27 07:10:38 has no hits.

BO09252.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:13 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 1..1440 17..1454 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:07 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 101..1551 10..1457 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:45 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 137..1573 17..1455 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:14 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 101..1551 10..1457 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:55 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
CG6401-RA 137..1573 17..1455 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:55 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17737917..17738771 603..1455 99 <- Minus
2R 17738828..17739065 365..602 100 <- Minus
2R 17739133..17739378 119..364 100 <- Minus
2R 17739448..17739549 17..118 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:45 Download gff for BO09252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13625422..13626276 603..1455 99 <- Minus
arm_2R 13626333..13626570 365..602 100 <- Minus
arm_2R 13626638..13626883 119..364 100 <- Minus
arm_2R 13626953..13627054 17..118 100   Minus

BO09252.pep Sequence

Translation from 16 to 1471

> BO09252.pep
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRASASFLDH

BO09252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6401-PB 479 CG6401-PB 1..479 1..479 2464 100 Plus
CG6401-PA 479 CG6401-PA 1..479 1..479 2464 100 Plus