Clone Sequence Records
BO09252.3prime Sequence
948 bp (900 high quality bases) assembled on 2006-01-18
> BO09252.3prime
ATGGTCTAGAAAGCTTGCGCTGGCCCTACGTTGTACATCCTGCGCTATCT
CTACGTGTTTCCGAGGACGCCAAAGCTCCAGCAAGCGCATTAAGAAGTGG
GCCACAACGAAGAACACCAGAAACCAGGATCCGTGCTGCCACACCGCAAA
CACCAGCTCGCTAGTGGTGAAAGAGCGTTCATTTAAAACGCGATCGTACA
CCTTTACTGTGCGAAGGGCAACATCCTCCCAATTGTAAAGCGTTTCCACC
AACTCATTACATCTATATGGACACATTACGGGCTCTGTAGAGCTGTTCTG
ATCCGCAGGAGGAGCAGAGACTGCTGGCAGTTGTGTAGGAGAGATAGGAG
TATCGACTTTCCTGCGACGTCGCCGCTTAACCTTTCCATTAGCGTCCGAG
GCCAAATGCCCATTGCCAACTGATGGACTAACCTTAAAGGAACTCTTTCG
ATGACGGTCGATGGCAATTAGAATCGCTGCGTAAATGGCATCAATTTCGG
GCTCTGCCAGCAGTATAAGACTCTTGGGTAGCACTTCGGGAATTCCGCCC
ACACTGGTGGACACCACCTGCAGTCCACAGGAAGCCGCCTCAACGATGGC
CATGCAGTAGGCCTCAGTCAGTGAGGTATTCAAAAAGATGTGGCCACGCA
CCAGGAAATCGCGAACCCTGTTATGCTCCACGGCGCCCACCATTTGAACC
CTTTCCTGCATATTGGTCTTTTCGCGAATCTCCTCCAGCAGATCACGCTT
AGGTCCATCGCCCACAATGATAAAGTTTATGTTGGGAGTGTTTTTGAACC
GTGGAATGATGCCAGCTAGCAAATCAATGCCTTTGCGGTAGACAAGACGG
GAGGCCACTACAATGTTGATTATATCATTGCTCGGACGCTGTTGAGGATC
GGGAGTAAACAGGGCAGTGTCGACTGCTTTGGGAATGACGGAAACTCG
BO09252.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PA | 1440 | CG6401-RA | 508..1437 | 948..19 | 4625 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 644..1573 | 948..19 | 4635 | 99.9 | Minus |
CG6401-RA | 1642 | CG6401-RA | 644..1573 | 948..19 | 4635 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17737921..17738771 | 19..869 | 4255 | 100 | Plus |
2R | 25286936 | 2R | 17738828..17738906 | 870..948 | 380 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:29:36 has no hits.
BO09252.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:46 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 508..1440 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:45 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 508..1440 | 18..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:06:59 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 644..1579 | 15..948 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:10:12 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 644..1579 | 15..948 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:10:12 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17737915..17738771 | 15..869 | 99 | <- | Plus |
2R | 17738828..17738906 | 870..948 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:06:59 Download gff for
BO09252.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13625420..13626276 | 15..869 | 99 | <- | Plus |
arm_2R | 13626333..13626411 | 870..948 | 98 | | Plus |
BO09252.5prime Sequence
825 bp (762 high quality bases) assembled on 2006-01-18
> BO09252.5prime
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCG
BO09252.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PA | 1440 | CG6401-RA | 1..809 | 17..825 | 4045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:38:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 137..945 | 17..825 | 4045 | 100 | Plus |
CG6401-RA | 1642 | CG6401-RA | 137..945 | 17..825 | 4045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17739133..17739380 | 364..117 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 17738828..17739067 | 602..363 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 17738549..17738771 | 825..603 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 3384077..3384249 | 106..278 | 610 | 90.2 | Plus |
2R | 25286936 | 2R | 17739448..17739549 | 118..17 | 510 | 100 | Minus |
2R | 25286936 | 2R | 3384246..3384349 | 314..417 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:38:03 has no hits.
BO09252.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:47 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:47 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-PA | 1..809 | 17..825 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:30 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 129..945 | 10..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:05 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 129..945 | 10..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:05 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17738828..17739065 | 365..602 | 100 | <- | Minus |
2R | 17739133..17739378 | 119..364 | 100 | <- | Minus |
2R | 17739448..17739557 | 10..118 | 96 | | Minus |
2R | 17738549..17738771 | 603..825 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:30 Download gff for
BO09252.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13626638..13626883 | 119..364 | 100 | <- | Minus |
arm_2R | 13626953..13627062 | 10..118 | 96 | | Minus |
arm_2R | 13626054..13626276 | 603..825 | 100 | <- | Minus |
arm_2R | 13626333..13626570 | 365..602 | 100 | <- | Minus |
BO09252.complete Sequence
1471 bp (1471 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631446
> BO09252.complete
GAAGTTATCAGTCGACATGCGCATCTGCATGGTGTCGGACTTCTTCTATC
CGAGCATCGGAGGGGTCGAGGAGCACGTCTACAACCTTTCGCAAATGTTG
CTCAGCTTGGGTCACAAGATCGTCGTGCTGACCCACGCCTACGGAGACTG
CAGTGGCATTCGCTATGTGACTGGCTACCTGAAGGTCTACTATCTGCCCA
TTAAGGTGTGCTACAACCAGTGCATACTGCCCACCGCTGTTTGCAATGTG
CCGATGTTGCGAGCGGTGCTACTTCGTGAGCGGGTGGAAGTGGTCCATGG
CCACTCTGCCTTCAGTGCTCTGGCGCACGAGGCACTGATGGTGGGCTCCC
TCCTGGGGCTAAAGACTGTCTTTACCGATCACAGCCTCTTTGGCTTTGCG
GACTTGTCAGCCGCTCTAACCAACAATCTGCTGGAGGTCAACTTGGGCAT
GGTCAATCACGCCATCTGTGTATCTCACATAGGGAAGGAGAACACTGTTC
TACGCGCTCGAGTAGCTAAACATCGAGTTTCCGTCATTCCCAATGCAGTC
GACACTGCCCTGTTTACTCCCGATCCTCAACAGCGTCCGAGCAATGATAT
AATCAACATTGTAGTGGCCTCCCGTCTTGTCTACCGCAAAGGCATTGATT
TGCTAGCTGGCATCATTCCACGGTTCAAAAACACTCCCAACATAAACTTT
ATCATTGTGGGCGATGGACCTAAGCGTGATCTGCTGGAGGAGATTCGCGA
AAAGACCAATATGCAGGAAAGGGTTCAAATGGTGGGCGCCGTGGAGCATA
ACAGGGTTCGCGATTTCCTGGTGCGTGGCCACATCTTTTTGAATACCTCA
CTGACTGAGGCCTACTGCATGGCCATCGTTGAGGCGGCTTCCTGTGGACT
GCAGGTGGTGTCCACCAGTGTGGGCGGAATTCCCGAAGTGCTACCCAAGA
GTCTTATACTGCTGGCAGAGCCCGAAATTGATGCCATTTACGCAGCGATT
CTAATTGCCATCGACCGTCATCGAAAGAGTTCCTTTAAGGTTAGTCCATC
AGTTGGCAATGGGCATTTGGCCTCGGACGCTAATGGAAAGGTTAAGCGGC
GACGTCGCAGGAAAGTCGATACTCCTATCTCTCCTACACAACTGCCAGCA
GTCTCTGCTCCTCCTGCGGATCAGAACAGCTCTACAGAGCCCGTAATGTG
TCCATATAGATGTAATGAGTTGGTGGAAACGCTTTACAATTGGGAGGATG
TTGCCCTTCGCACAGTAAAGGTGTACGATCGCGTTTTAAATGAACGCTCT
TTCACCACTAGCGAGCTGGTGTTTGCGGTGTGGCAGCACGGATCCTGGTT
TCTGGTGTTCTTCGTTGTGGCCCACTTCTTAATGCGCTTGCTGGAGCTTT
GGCGTCCTCGGAAACACGTAGAGATAGCGCAGGATGTACAACGTAGGGCC
AGCGCAAGCTTTCTAGACCAT
BO09252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1440 | CG6401-PB | 1..1437 | 17..1453 | 7185 | 100 | Plus |
CG6401-RA | 1440 | CG6401-PA | 1..1437 | 17..1453 | 7185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:10:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-RB | 1872 | CG6401-RB | 137..1573 | 17..1453 | 7185 | 100 | Plus |
CG6401-RA | 1642 | CG6401-RA | 137..1573 | 17..1453 | 7185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17737921..17738771 | 1453..603 | 4255 | 100 | Minus |
2R | 25286936 | 2R | 17739133..17739380 | 364..117 | 1240 | 100 | Minus |
2R | 25286936 | 2R | 17738828..17739067 | 602..363 | 1200 | 100 | Minus |
2R | 25286936 | 2R | 3384077..3384249 | 106..278 | 610 | 90.2 | Plus |
2R | 25286936 | 2R | 17739448..17739549 | 118..17 | 510 | 100 | Minus |
2R | 25286936 | 2R | 3384246..3384349 | 314..417 | 265 | 83.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:10:38 has no hits.
BO09252.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:13 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 1..1440 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:07 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 101..1551 | 10..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:45 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 137..1573 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:14 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 101..1551 | 10..1457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:55 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6401-RA | 137..1573 | 17..1455 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:55 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17737917..17738771 | 603..1455 | 99 | <- | Minus |
2R | 17738828..17739065 | 365..602 | 100 | <- | Minus |
2R | 17739133..17739378 | 119..364 | 100 | <- | Minus |
2R | 17739448..17739549 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:45 Download gff for
BO09252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13625422..13626276 | 603..1455 | 99 | <- | Minus |
arm_2R | 13626333..13626570 | 365..602 | 100 | <- | Minus |
arm_2R | 13626638..13626883 | 119..364 | 100 | <- | Minus |
arm_2R | 13626953..13627054 | 17..118 | 100 | | Minus |
BO09252.pep Sequence
Translation from 16 to 1471
> BO09252.pep
MRICMVSDFFYPSIGGVEEHVYNLSQMLLSLGHKIVVLTHAYGDCSGIRY
VTGYLKVYYLPIKVCYNQCILPTAVCNVPMLRAVLLRERVEVVHGHSAFS
ALAHEALMVGSLLGLKTVFTDHSLFGFADLSAALTNNLLEVNLGMVNHAI
CVSHIGKENTVLRARVAKHRVSVIPNAVDTALFTPDPQQRPSNDIINIVV
ASRLVYRKGIDLLAGIIPRFKNTPNINFIIVGDGPKRDLLEEIREKTNMQ
ERVQMVGAVEHNRVRDFLVRGHIFLNTSLTEAYCMAIVEAASCGLQVVST
SVGGIPEVLPKSLILLAEPEIDAIYAAILIAIDRHRKSSFKVSPSVGNGH
LASDANGKVKRRRRRKVDTPISPTQLPAVSAPPADQNSSTEPVMCPYRCN
ELVETLYNWEDVALRTVKVYDRVLNERSFTTSELVFAVWQHGSWFLVFFV
VAHFLMRLLELWRPRKHVEIAQDVQRRASASFLDH
BO09252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6401-PB | 479 | CG6401-PB | 1..479 | 1..479 | 2464 | 100 | Plus |
CG6401-PA | 479 | CG6401-PA | 1..479 | 1..479 | 2464 | 100 | Plus |