Clone Sequence Records
BO09254.3prime Sequence
814 bp (796 high quality bases) assembled on 2006-01-18
> BO09254.3prime
ATGGTCTAGAAAGCTTGCCTCATCCTTGGCAAGCGTTGAGTCCTCACTTT
CCTTGAACAGTATATCCTGGATCTTGGACCGCACGTACATCTTCCGACTG
AGCGAAAGGTGGCGCATTGCGGGCACCAAGCTAAGTGCAAAATAGTAGTC
GTCGTCCTTGGTGAGCTCCTCGTGATTCTGTTGTATGATGTAGCTGAGCT
GTTCGCTGACAGCGGTCAGCCGTTCGATGGACGTCTCCAGGTTGTTCTTC
AGCTGCTTGGCCGAGCTGCTGCTGGAGGACGTGGAGGCCACCACAGTAGC
CTGTACGCCCGAACCAACACCGATGGGCCTGCTACTTCCACCGGCTGGTG
AAGTCGAATGGGTTAGCACGGTCACTTGCTTCTCAGGCTGATCCAGGCCC
TCATCATCCATCACGTGTATAGGACTATAGCACAGTGGATCCTCGCTGTA
TATGATGTCCTTAATGTCCTCGCTAATCTCATCGTTCTGCTCGTACTCCT
CCCACTTTTGCGGCAGGGCGCCCGCCTCGCCCAGATAATTGGCGACGTTC
GACTCGATCTTCGGCTTGGCCACACGCAGCGGCTCCCTCAGCGTCTTGGC
CTTGGTAATCCGCACGGTTTTGTCTTTCTTGATGATTGGGATCATCCGGG
CCTGGGGACGTTGCTGCACCGGACTGACCAGCACCTCGTCCCTGTGCTTG
TGCCGCAGATGCGTCCACAAATTGGTCGTATTGTTGCCCTTCAAATTGCT
GGCCATGCCACCACGCGATATATTGTTGCCGCAATAACGGCATATCGCAA
AGTTTTCGCACTCC
BO09254.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10159-PB | 849 | BEAF-32-RB | 51..846 | 814..19 | 3980 | 100 | Minus |
CG10159-PA | 852 | BEAF-32-RA | 244..849 | 624..19 | 3030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 537..1332 | 814..19 | 3980 | 100 | Minus |
BEAF-32-RB | 1173 | CG10159-RB | 152..947 | 814..19 | 3980 | 100 | Minus |
BEAF-32-RA | 1192 | CG10159-RA | 361..966 | 624..19 | 3030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772404 | 625..19 | 3035 | 100 | Minus |
2R | 25286936 | 2R | 14771452..14771642 | 814..624 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:06 has no hits.
BO09254.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:48 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 51..849 | 18..814 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:49 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 51..849 | 18..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:44:54 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 152..952 | 13..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:11 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 152..952 | 13..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:11 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771452..14771642 | 624..814 | 100 | -> | Minus |
2R | 14771800..14772409 | 13..623 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:44:54 Download gff for
BO09254.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658957..10659147 | 624..814 | 100 | -> | Minus |
arm_2R | 10659305..10659914 | 13..623 | 99 | | Minus |
BO09254.5prime Sequence
868 bp (785 high quality bases) assembled on 2006-01-18
> BO09254.5prime
GAAGTTATCAGTCGGCATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCCAAGATGAGGCAAGC
BO09254.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10159-PB | 849 | BEAF-32-RB | 1..837 | 17..853 | 4185 | 100 | Plus |
CG10159-PA | 852 | BEAF-32-RA | 244..840 | 257..853 | 2985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 487..1332 | 17..862 | 4200 | 99.8 | Plus |
BEAF-32-RB | 1173 | CG10159-RB | 102..947 | 17..862 | 4200 | 99.8 | Plus |
BEAF-32-RA | 1192 | CG10159-RA | 361..966 | 257..862 | 3000 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772404 | 256..862 | 3005 | 99.7 | Plus |
2R | 25286936 | 2R | 14771402..14771642 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:34:05 has no hits.
BO09254.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:49 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:49 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10159-PB | 1..849 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:08 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..952 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:02 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..952 | 17..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:02 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771402..14771642 | 17..257 | 100 | -> | Plus |
2R | 14771800..14772409 | 258..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:08 Download gff for
BO09254.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658907..10659147 | 17..257 | 100 | -> | Plus |
arm_2R | 10659305..10659914 | 258..868 | 99 | | Plus |
BO09254.complete Sequence
880 bp assembled on 2008-08-15
GenBank Submission: FJ631447
> BO09254.complete
GAAGTTATCAGTCGGCATGCCCAAGGGTCGTGTTAGCAATGTGTGGCAGC
ACTACGATATTAACGAGGAGTGCGAAAACTTTGCGATATGCCGTTATTGC
GGCAACAATATATCGCGTGGTGGCATGGCCAGCAATTTGAAGGGCAACAA
TACGACCAATTTGTGGACGCATCTGCGGCACAAGCACAGGGACGAGGTGC
TGGTCAGTCCGGTGCAGCAACGTCCCCAGGCCCGGATGATCCCAATCATC
AAGAAAGACAAAACCGTGCGGATTACCAAGGCCAAGACGCTGAGGGAGCC
GCTGCGTGTGGCCAAGCCGAAGATCGAGTCGAACGTCGCCAATTATCTGG
GCGAGGCGGGCGCCCTGCCGCAAAAGTGGGAGGAGTACGAGCAGAACGAT
GAGATTAGCGAGGACATTAAGGACATCATATACAGCGAGGATCCACTGTG
CTATAGTCCTATACACGTGATGGATGATGAGGGCCTGGATCAGCCTGAGA
AGCAAGTGACCGTGCTAACCCATTCGACTTCACCAGCCGGTGGAAGTAGC
AGGCCCATCGGTGTTGGTTCGGGCGTACAGGCTACTGTGGTGGCCTCCAC
GTCCTCCAGCAGCAGCTCGGCCAAGCAGCTGAAGAACAACCTGGAGACGT
CCATCGAACGGCTGACCGCTGTCAGCGAACAGCTCAGCTACATCATACAA
CAGAATCACGAGGAGCTCACCAAGGACGACGACTACTATTTTGCACTTAG
CTTGGTGCCCGCAATGCGCCACCTTTCGCTCAGTCGGAAGATGTACGTGC
GGTCCAAGATCCAGGATATACTGTTCAAGGAAAGTGAGGACTCAACGCTT
GCCAAGGATGAGGCAAGCTTTCTAGACCAT
BO09254.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 849 | CG10159-PC | 1..846 | 17..862 | 4230 | 100 | Plus |
BEAF-32-RB | 849 | CG10159-PB | 1..846 | 17..862 | 4230 | 100 | Plus |
BEAF-32-RA | 852 | CG10159-PA | 244..849 | 257..862 | 3030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-RC | 1558 | CG10159-RC | 487..1332 | 17..862 | 4230 | 100 | Plus |
BEAF-32-RB | 1173 | CG10159-RB | 102..947 | 17..862 | 4230 | 100 | Plus |
BEAF-32-RA | 1192 | CG10159-RA | 361..966 | 257..862 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14771798..14772404 | 256..862 | 3035 | 100 | Plus |
2R | 25286936 | 2R | 14771402..14771642 | 17..257 | 1205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:45:19 has no hits.
BO09254.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:20 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 465..1315 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:53 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..947 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:13 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 465..1310 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:42 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BEAF-32-RB | 102..947 | 17..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:42 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14771402..14771642 | 17..257 | 100 | -> | Plus |
2R | 14771800..14772404 | 258..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:53 Download gff for
BO09254.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10658907..10659147 | 17..257 | 100 | -> | Plus |
arm_2R | 10659305..10659909 | 258..864 | 99 | | Plus |
BO09254.pep Sequence
Translation from 16 to 880
> BO09254.pep
MPKGRVSNVWQHYDINEECENFAICRYCGNNISRGGMASNLKGNNTTNLW
THLRHKHRDEVLVSPVQQRPQARMIPIIKKDKTVRITKAKTLREPLRVAK
PKIESNVANYLGEAGALPQKWEEYEQNDEISEDIKDIIYSEDPLCYSPIH
VMDDEGLDQPEKQVTVLTHSTSPAGGSSRPIGVGSGVQATVVASTSSSSS
SAKQLKNNLETSIERLTAVSEQLSYIIQQNHEELTKDDDYYFALSLVPAM
RHLSLSRKMYVRSKIQDILFKESEDSTLAKDEASFLDH
BO09254.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:31:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BEAF-32-PC | 282 | CG10159-PC | 1..282 | 1..282 | 1457 | 100 | Plus |
BEAF-32-PB | 282 | CG10159-PB | 1..282 | 1..282 | 1457 | 100 | Plus |
BEAF-32-PA | 283 | CG10159-PA | 25..283 | 2..282 | 1034 | 76.2 | Plus |