Clone Sequence Records
BO09256.3prime Sequence
906 bp (850 high quality bases) assembled on 2006-01-18
> BO09256.3prime
ATGGTCTAGAAAGCTTGCGCTGTAAAATTTCGTGTTTATTTCGCGTCTCT
TCAATTTGACTTTCAGCCCATCCTTTGTGTGTATAAAAGGAGCTGGCCGG
TGGGAAACTTTAAGGGTCTTCACCTGGTTCGCATCCAATTCCAAATGAAA
GTTTTGGAGTAATTTGATCAGGGCCACTTTAATTACCAACTTTGCAAAGT
TCTGTCCCACACACTGCGATCCCCCAATGCCAAATCCTATAAAAACATTG
CTCTTTGTCTTGTCTTCACATTGGCCCACATCGTTGGCAGTTTGCAGAAA
TCGAAGTGGCTTGTATTTCATAGGCTCACTGAAGTATTTTTCATCTCGGT
GCATAGCCAGTAGAGGCACCATCAAAGTCTTTCCCTCATCAATTGTGAAT
TTTGAATTGGGTAGCGAATAACTTTTGCGGCAAACACGTTCAATAATGGG
TAGAGGTGGATATTTGCGAAGAGTTTCTTTCAAGCACATGTCCATATACC
TAAGACCATTAAGCTCTTCAAATTTGAGCTGACCATTTTCATTGCTTAGC
TCCTTTATTTCCGCTCTCAGTTTTTCCACTATTAAAGGTTCTTGCAGGAT
TTCCAAGAGAGTGAAGGTTACAGTTGAAGCTACTGCATCTAGAGATACTT
TCAAGAGATCCTCGGCAACTTTGGCCAAGCGTTTGATGGACAACAGTTTG
TCTGCATCATTAATCGGTTCTAGTTGCCATTTATCGCCGCTAACTTCGTT
GCCATTTCTAAATCTGACTAGTAGTTGTAGAATATCTTTACGTATCAGTC
CATGATCTTCTCGTAGTTCAACGCTTTGTTTAATGAGATCTCTTAAGCGG
TAGGTATATGAAGATTTCTGCGGCAGGCGACCCAAAGTGAAGGATTGTAT
CGAGGC
BO09256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10391-PA | 1479 | Cyp310a1-RA | 589..1476 | 906..19 | 4440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:15:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 655..1542 | 906..19 | 4440 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18651425..18651697 | 206..478 | 1365 | 100 | Plus |
2L | 23513712 | 2L | 18651755..18651986 | 477..708 | 1160 | 100 | Plus |
2L | 23513712 | 2L | 18651174..18651362 | 19..207 | 945 | 100 | Plus |
2L | 23513712 | 2L | 18652038..18652219 | 708..889 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:15:41 has no hits.
BO09256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:52 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 589..1479 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:54 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 589..1479 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:33:23 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 655..1548 | 12..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:36:08 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 655..1548 | 12..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:36:08 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18651168..18651361 | 12..206 | 98 | <- | Plus |
2L | 18651426..18651695 | 207..476 | 100 | <- | Plus |
2L | 18651755..18651985 | 477..707 | 100 | <- | Plus |
2L | 18652038..18652219 | 708..889 | 100 | <- | Plus |
2L | 18652281..18652297 | 890..906 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:33:23 Download gff for
BO09256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651168..18651361 | 12..206 | 98 | <- | Plus |
arm_2L | 18651426..18651695 | 207..476 | 100 | <- | Plus |
arm_2L | 18651755..18651985 | 477..707 | 100 | <- | Plus |
arm_2L | 18652038..18652219 | 708..889 | 100 | <- | Plus |
arm_2L | 18652281..18652297 | 890..906 | 100 | | Plus |
BO09256.5prime Sequence
879 bp (788 high quality bases) assembled on 2006-01-17
> BO09256.5prime
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAAACAAACTGTTGTCCATCAAACGCTTGGCCAAAGTTGCCGAG
GATCTCTTGAAAGTATCTCTAGATGCAGT
BO09256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10391-PA | 1479 | Cyp310a1-RA | 1..863 | 17..879 | 4290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 67..929 | 17..879 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:31:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18652457..18652944 | 504..17 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 18652038..18652219 | 803..622 | 910 | 100 | Minus |
2L | 23513712 | 2L | 18652281..18652397 | 621..505 | 585 | 100 | Minus |
2L | 23513712 | 2L | 18651910..18651986 | 879..803 | 370 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:31:39 has no hits.
BO09256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:53 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:55 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10391-PA | 1..863 | 17..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:47:42 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 63..929 | 9..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:54 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 63..929 | 9..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:54 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
2L | 18652457..18652948 | 9..504 | 99 | | Minus |
2L | 18651910..18651985 | 804..879 | 98 | <- | Minus |
2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:47:42 Download gff for
BO09256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651910..18651985 | 804..879 | 98 | <- | Minus |
arm_2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
arm_2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
arm_2L | 18652457..18652948 | 9..504 | 99 | | Minus |
BO09256.complete Sequence
1510 bp (1510 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631449
> BO09256.complete
GAAGTTATCAGTCGACATGTGGCTGCTGTTGCCTATTCTGCTATATTCGG
CGGTATTCCTCTCGGTGCGGCACATTTACAGCCACTGGCGACGCAGGGGA
TTCCCCTCGGAAAAGGCCGGCATTACGTGGAGTTTCCTGCAAAAGGCCTA
CAGACGGGAGTTCCGACACGTGGAGGCCATCTGTGAGGCCTACCAGTCGG
GCAAGGATCGGCTTCTGGGCATCTACTGCTTCTTCAGGCCTGTCCTTCTG
GTGCGAAATGTGGAGCTAGCCCAGACGATTCTGCAGCAATCAAATGGACA
CTTCAGCGAACTGAAGTGGGACTATATCTCGGGTTATCGCAGGTTCAATT
TGCTGGAGAAACTGGCGCCCATGTTTGGCACCAAACGATTGTCCGAGATG
TTCGGGCAGGTCCAGAAAGTGGGTGATCATTTAATTCACCATTTGCTGGA
CAGGCAAGGCCAAGGATGTCCACAGGAAGTGGATATCCAGCAAAAACTCA
GAGTTTATTCCGTCAACATAATTGCCAATCTGATTTACGGCTTGGACATT
AATAACTTTGAGCACGAGGATCATATCTTGACCAGCTACCTGAGCCATAG
TCAGGCCTCGATACAATCCTTCACTTTGGGTCGCCTGCCGCAGAAATCTT
CATATACCTACCGCTTAAGAGATCTCATTAAACAAAGCGTTGAACTACGA
GAAGATCATGGACTGATACGTAAAGATATTCTACAACTACTAGTCAGATT
TAGAAATGGCAACGAAGTTAGCGGCGATAAATGGCAACTAGAACCGATTA
ATGATGCAGACAAACTGTTGTCCATCAAACGCTTGGCCAAAGTTGCCGAG
GATCTCTTGAAAGTATCTCTAGATGCAGTAGCTTCAACTGTAACCTTCAC
TCTCTTGGAAATCCTGCAAGAACCTTTAATAGTGGAAAAACTGAGAGCGG
AAATAAAGGAGCTAAGCAATGAAAATGGTCAGCTCAAATTTGAAGAGCTT
AATGGTCTTAGGTATATGGACATGTGCTTGAAAGAAACTCTTCGCAAATA
TCCACCTCTACCCATTATTGAACGTGTTTGCCGCAAAAGTTATTCGCTAC
CCAATTCAAAATTCACAATTGATGAGGGAAAGACTTTGATGGTGCCTCTA
CTGGCTATGCACCGAGATGAAAAATACTTCAGTGAGCCTATGAAATACAA
GCCACTTCGATTTCTGCAAACTGCCAACGATGTGGGCCAATGTGAAGACA
AGACAAAGAGCAATGTTTTTATAGGATTTGGCATTGGGGGATCGCAGTGT
GTGGGACAGAACTTTGCAAAGTTGGTAATTAAAGTGGCCCTGATCAAATT
ACTCCAAAACTTTCATTTGGAATTGGATGCGAACCAGGTGAAGACCCTTA
AAGTTTCCCACCGGCCAGCTCCTTTTATACACACAAAGGATGGGCTGAAA
GTCAAATTGAAGAGACGCGAAATAAACACGAAATTTTACAGCGCAAGCTT
TCTAGACCAT
BO09256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1479 | CG10391-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-RA | 1658 | CG10391-RA | 67..1542 | 17..1492 | 7380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18652457..18652944 | 504..17 | 2440 | 100 | Minus |
2L | 23513712 | 2L | 18651425..18651697 | 1305..1033 | 1365 | 100 | Minus |
2L | 23513712 | 2L | 18651755..18651986 | 1034..803 | 1160 | 100 | Minus |
2L | 23513712 | 2L | 18651174..18651362 | 1492..1304 | 945 | 100 | Minus |
2L | 23513712 | 2L | 18652038..18652219 | 803..622 | 910 | 100 | Minus |
2L | 23513712 | 2L | 18652281..18652397 | 621..505 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:06:41 has no hits.
BO09256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:17 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 1..1479 | 17..1496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:13 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 37..1522 | 9..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:19 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 67..1542 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:17 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 37..1522 | 9..1499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:52 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp310a1-RA | 67..1542 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:52 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18651172..18651361 | 1305..1494 | 98 | <- | Minus |
2L | 18651426..18651695 | 1035..1304 | 100 | <- | Minus |
2L | 18651755..18651985 | 804..1034 | 100 | <- | Minus |
2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
2L | 18652457..18652944 | 17..504 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:19 Download gff for
BO09256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18651172..18651361 | 1305..1494 | 98 | <- | Minus |
arm_2L | 18651426..18651695 | 1035..1304 | 100 | <- | Minus |
arm_2L | 18651755..18651985 | 804..1034 | 100 | <- | Minus |
arm_2L | 18652038..18652219 | 622..803 | 100 | <- | Minus |
arm_2L | 18652281..18652397 | 505..621 | 100 | <- | Minus |
arm_2L | 18652457..18652944 | 17..504 | 100 | | Minus |
BO09256.pep Sequence
Translation from 16 to 1510
> BO09256.pep
MWLLLPILLYSAVFLSVRHIYSHWRRRGFPSEKAGITWSFLQKAYRREFR
HVEAICEAYQSGKDRLLGIYCFFRPVLLVRNVELAQTILQQSNGHFSELK
WDYISGYRRFNLLEKLAPMFGTKRLSEMFGQVQKVGDHLIHHLLDRQGQG
CPQEVDIQQKLRVYSVNIIANLIYGLDINNFEHEDHILTSYLSHSQASIQ
SFTLGRLPQKSSYTYRLRDLIKQSVELREDHGLIRKDILQLLVRFRNGNE
VSGDKWQLEPINDADKLLSIKRLAKVAEDLLKVSLDAVASTVTFTLLEIL
QEPLIVEKLRAEIKELSNENGQLKFEELNGLRYMDMCLKETLRKYPPLPI
IERVCRKSYSLPNSKFTIDEGKTLMVPLLAMHRDEKYFSEPMKYKPLRFL
QTANDVGQCEDKTKSNVFIGFGIGGSQCVGQNFAKLVIKVALIKLLQNFH
LELDANQVKTLKVSHRPAPFIHTKDGLKVKLKRREINTKFYSASFLDH
BO09256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp310a1-PA | 492 | CG10391-PA | 1..492 | 1..492 | 2542 | 100 | Plus |
Cyp6d4-PA | 515 | CG12800-PA | 5..510 | 3..484 | 659 | 30 | Plus |
Cyp6d5-PA | 508 | CG3050-PA | 4..478 | 3..453 | 639 | 29.6 | Plus |
Cyp6d2-PA | 512 | CG4373-PA | 1..512 | 1..485 | 589 | 28.4 | Plus |
Cyp6a22-PC | 499 | CG10240-PC | 7..464 | 5..453 | 431 | 26.3 | Plus |