Clone BO09258 Report

Search the DGRC for BO09258

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:58
Vector:pDNR-Dual
Associated Gene/Transcriptsgg-RB
Protein status:BO09258.pep: validated full length
Sequenced Size:1576

Clone Sequence Records

BO09258.3prime Sequence

878 bp (844 high quality bases) assembled on 2006-01-18

> BO09258.3prime
ATGGTCTAGAAAGCTTGCTGAATCTGTTACATTGGCGCCGCCGGCATTAG
TCGCGCCTATAGCGCCAGTTGCTGTTGCAGCTGCGGTCGCCGCACCGGCT
CCGCCACCACCACCAGCACCGCCAGCGACGGCGGCATTGGCTCCTCCGGC
AGCCACAGCGGACGGCGCTCCCGATGCTCCGCCGCTGCTACTGTTGTTAC
CAGATCCGGGTCCACCGGCACTCGCTCCGCCGGTTCCTGCTGTTGCTCCG
CCCGATCCGGATCCCGCAGCTGCTGCTGTACCCTGCGACTGTGGCTGGGC
GGATCCTTCCACCGAGGCACCACTGCCCGTTGACGAGACGCTGGTGGAGC
CGCTGGCCGCAATGGAGGCTGCTCCGCCGGCCGAGGGTCGATTGCCGCCA
GGTCCGGATGCGTTCTGCAGATGCTTGGGCAACAACTGCGGCACTAGGCT
GGGCTGTATTGAGAGCTCATGCTCTGTGAAGTTGAACAGCGGCGGCATAT
CGCGACCGTTGGGCAAGGTGTGATTACCCTCCATGCGTAGCTCATCGAAG
AACGGATGTGCGCAGGCCTTGAGCGGTGTGATCCTGGCACTGGGCGTATA
CTCGAGCAGCAGGGACACCAAGTTGATAGCTTCTGTAGGAGTGCGTATAC
GGAAAACTTTCTGCCATGGATGACTCTTAATCTGAGGGAACTTGAATTCC
GTGTAGTTTGGATTCATTTCGCGTATCTGTTCTCTTGTCGGTGTGCCCAG
GACCTTGATGACCTCGACGAGCTGATCCACACCGGAATCGCCAGGGAAGA
TGGGCTGGCCCAGCAGCAGTTCGGCCAAAACGCAACCGGCACTCCAGACA
TCGATCTTTGTTGTATAATTGATGGGCG

BO09258.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2621-PD 3204 sgg-RD 2345..3201 875..19 4285 100 Minus
CG2621-PH 1545 sgg-RH 686..1542 875..19 4285 100 Minus
CG2621-PI 1545 sgg-RI 686..1542 875..19 4285 100 Minus
CG2621-PG 1491 sgg-RG 632..1488 875..19 4285 100 Minus
CG2621-PK 1251 sgg-RK 392..1248 875..19 4285 100 Minus
CG2621-PB 1545 sgg-RB 686..1542 875..19 4285 100 Minus
CG2621-PE 1545 sgg-RE 686..1542 875..19 4285 100 Minus
CG2621-PF 1545 sgg-RF 686..1542 875..19 4285 100 Minus
CG2621-PC 1545 sgg-RC 686..1542 875..19 4285 100 Minus
CG2621-PL 1761 sgg-RL 719..1570 875..24 4260 100 Minus
CG2621-PJ 1728 sgg-RJ 686..1537 875..24 4260 100 Minus
CG2621-PA 1728 sgg-RA 686..1537 875..24 4260 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RN 3182 CG2621-RN 1325..2181 875..19 4285 100 Minus
sgg-RC 3110 CG2621-RC 1234..2090 875..19 4285 100 Minus
sgg-RF 4244 CG2621-RF 1332..2188 875..19 4285 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2673174..2673618 468..24 2225 100 Minus
X 23542271 X 2671628..2671824 852..656 985 100 Minus
X 23542271 X 2672914..2673103 657..468 950 100 Minus
3R 32079331 3R 31373192..31373316 867..743 205 77.6 Minus
Blast to na_te.dros performed 2015-02-11 23:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..7020 297..61 133 55.2 Minus
roo 9092 roo DM_ROO 9092bp 1048..1141 308..216 117 62.9 Minus

BO09258.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:55 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-PF 684..1545 18..878 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:07:58 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2621-PI 684..1545 18..878 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:32:40 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RF 1330..2188 19..878 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:35:37 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RF 1330..2188 19..878 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:35:37 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2671520..2671545 852..878 96 -> Minus
X 2671629..2671822 658..851 100 -> Minus
X 2672914..2673103 468..657 100 -> Minus
X 2673175..2673628 13..467 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:32:40 Download gff for BO09258.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2565553..2565578 852..878 96 -> Minus
arm_X 2565662..2565855 658..851 100 -> Minus
arm_X 2566947..2567136 468..657 100 -> Minus
arm_X 2567208..2567661 13..467 99   Minus

BO09258.5prime Sequence

831 bp (787 high quality bases) assembled on 2006-01-18

> BO09258.5prime
GAAGTTATCAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCG
AGGGCAACAAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGC
AGTCGCGATGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGG
CACCGATCGCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCA
ATGGCAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAA
CTGGTGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGA
ATTGCAAATAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGT
ACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTA
GTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGC
CAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATC
AACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGT
GATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAA
GCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATG
TATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGC
GCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTT
GGCCGAACTGCTGCTGGGCCAGCCCATCTTTCCTGGCGATTCCGGTGTGG
ATCAGCTCGTCGAGGTCATCAAGGTCCTGGG

BO09258.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG2621-PH 1545 sgg-RH 1..815 17..831 4050 99.8 Plus
CG2621-PI 1545 sgg-RI 1..815 17..831 4050 99.8 Plus
CG2621-PJ 1728 sgg-RJ 1..815 17..831 4050 99.8 Plus
CG2621-PB 1545 sgg-RB 1..815 17..831 4050 99.8 Plus
CG2621-PA 1728 sgg-RA 1..815 17..831 4050 99.8 Plus
CG2621-PE 1545 sgg-RE 1..815 17..831 4050 99.8 Plus
CG2621-PF 1545 sgg-RF 1..815 17..831 4050 99.8 Plus
CG2621-PC 1545 sgg-RC 1..815 17..831 4050 99.8 Plus
CG2621-PL 1761 sgg-RL 119..848 102..831 3625 99.8 Plus
CG2621-PD 3204 sgg-RD 1745..2474 102..831 3625 99.8 Plus
CG2621-PG 1491 sgg-RG 32..761 102..831 3625 99.8 Plus
CG2621-PK 1251 sgg-RK 1..521 311..831 2580 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:28:04
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 3110 CG2621-RC 549..1363 17..831 4060 99.9 Plus
sgg-RF 4244 CG2621-RF 647..1461 17..831 4060 99.9 Plus
sgg-RE 3055 CG2621-RE 494..1308 17..831 4060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2671307..2671545 487..725 1195 100 Plus
X 23542271 X 2669913..2670103 102..292 955 100 Plus
X 23542271 X 2671119..2671231 375..487 565 100 Plus
X 23542271 X 2671628..2671734 725..831 520 99.1 Plus
3R 32079331 3R 31373036..31373307 554..825 490 78.7 Plus
X 23542271 X 2642009..2642095 17..103 435 100 Plus
X 23542271 X 2670172..2670257 291..376 430 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:28:00 has no hits.

BO09258.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:56 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-PF 1..815 17..831 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:00 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2621-PB 1..815 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:23:30 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..1308 17..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:31:08 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..1308 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:31:08 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2642009..2642093 17..101 100 -> Plus
X 2669913..2670103 102..292 100 -> Plus
X 2670174..2670257 293..376 100 -> Plus
X 2671121..2671231 377..487 100 -> Plus
X 2671308..2671545 488..725 100 -> Plus
X 2671629..2671734 726..831 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:23:30 Download gff for BO09258.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2565662..2565767 726..831 99   Plus
arm_X 2536042..2536126 17..101 100 -> Plus
arm_X 2563946..2564136 102..292 100 -> Plus
arm_X 2564207..2564290 293..376 100 -> Plus
arm_X 2565154..2565264 377..487 100 -> Plus
arm_X 2565341..2565578 488..725 100 -> Plus

BO09258.complete Sequence

1576 bp (1576 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631450

> BO09258.complete
GAAGTTATCAGTCGACATGAGCGGTCGTCCAAGAACTTCCTCCTTCGCCG
AGGGCAACAAACAGTCGCCGAGTTTGGTGCTGGGCGGCGTCAAAACATGC
AGTCGCGATGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGG
CACCGATCGCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCA
ATGGCAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAA
CTGGTGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGA
ATTGCAAATAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGT
ACTTTTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTA
GTCCTCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGC
CAAAACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATC
AACTGTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGT
GATATCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAA
GCTCTGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATG
TATCGTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGC
GCCATCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTT
GGCCGAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGG
ATCAGCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAG
ATACGCGAAATGAATCCAAACTACACGGAATTCAAGTTCCCTCAGATTAA
GAGTCATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTA
TCAACTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACA
CCGCTCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACGCATGGAGGG
TAATCACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGTTCAACTTCA
CAGAGCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAGTTGTTGCCC
AAGCATCTGCAGAACGCATCCGGACCTGGCGGCAATCGACCCTCGGCCGG
CGGAGCAGCCTCCATTGCGGCCAGCGGCTCCACCAGCGTCTCGTCAACGG
GCAGTGGTGCCTCGGTGGAAGGATCCGCCCAGCCACAGTCGCAGGGTACA
GCAGCAGCTGCGGGATCCGGATCGGGCGGAGCAACAGCAGGAACCGGCGG
AGCGAGTGCCGGTGGACCCGGATCTGGTAACAACAGTAGCAGCGGCGGAG
CATCGGGAGCGCCGTCCGCTGTGGCTGCCGGAGGAGCCAATGCCGCCGTC
GCTGGCGGTGCTGGTGGTGGTGGCGGAGCCGGTGCGGCGACCGCAGCTGC
AACAGCAACTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAA
CAGATTCAGCAAGCTTTCTAGACCAT

BO09258.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:32:52
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 1545 CG2621-PC 1..1542 17..1558 7710 100 Plus
sgg-RF 1545 CG2621-PF 1..1542 17..1558 7710 100 Plus
sgg-RE 1545 CG2621-PE 1..1542 17..1558 7710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:32:54
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-RC 3110 CG2621-RC 549..2090 17..1558 7710 100 Plus
sgg-RF 4244 CG2621-RF 647..2188 17..1558 7710 100 Plus
sgg-RE 3055 CG2621-RE 494..2035 17..1558 7710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:32:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2673174..2673618 1109..1553 2225 100 Plus
X 23542271 X 2671307..2671545 487..725 1195 100 Plus
X 23542271 X 2671628..2671824 725..921 985 100 Plus
X 23542271 X 2669913..2670103 102..292 955 100 Plus
X 23542271 X 2672914..2673103 920..1109 950 100 Plus
X 23542271 X 2671119..2671231 375..487 565 100 Plus
3R 32079331 3R 31373036..31373316 554..834 490 78.3 Plus
X 23542271 X 2642009..2642095 17..103 435 100 Plus
X 23542271 X 2670172..2670257 291..376 430 100 Plus
Blast to na_te.dros performed 2014-11-28 08:32:51
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1048..1141 1269..1361 117 62.9 Plus

BO09258.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:18 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 1..1545 17..1559 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:09 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 288..1829 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:19 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..2035 17..1560 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:18 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RB 288..1829 17..1558 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:19 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
sgg-RE 494..2035 17..1560 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:19 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
X 2673175..2673623 1110..1560 99   Plus
X 2642009..2642093 17..101 100 -> Plus
X 2669913..2670103 102..292 100 -> Plus
X 2670174..2670257 293..376 100 -> Plus
X 2671121..2671231 377..487 100 -> Plus
X 2671308..2671545 488..725 100 -> Plus
X 2671629..2671822 726..919 100 -> Plus
X 2672914..2673103 920..1109 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:19 Download gff for BO09258.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2565341..2565578 488..725 100 -> Plus
arm_X 2565662..2565855 726..919 100 -> Plus
arm_X 2566947..2567136 920..1109 100 -> Plus
arm_X 2536042..2536126 17..101 100 -> Plus
arm_X 2563946..2564136 102..292 100 -> Plus
arm_X 2564207..2564290 293..376 100 -> Plus
arm_X 2565154..2565264 377..487 100 -> Plus
arm_X 2567208..2567656 1110..1560 99   Plus

BO09258.pep Sequence

Translation from 16 to 1576

> BO09258.pep
MSGRPRTSSFAEGNKQSPSLVLGGVKTCSRDGSKITTVVATPGQGTDRVQ
EVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMR
KLEHCNIVKLLYFFYSSGEKRDEVFLNLVLEYIPETVYKVARQYAKTKQT
IPINFIRLYMYQLFRSLAYIHSLGICHRDIKPQNLLLDPETAVLKLCDFG
SAKQLLHGEPNVSYICSRYYRAPELIFGAINYTTKIDVWSAGCVLAELLL
GQPIFPGDSGVDQLVEVIKVLGTPTREQIREMNPNYTEFKFPQIKSHPWQ
KVFRIRTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHTLP
NGRDMPPLFNFTEHELSIQPSLVPQLLPKHLQNASGPGGNRPSAGGAASI
AASGSTSVSSTGSGASVEGSAQPQSQGTAAAAGSGSGGATAGTGGASAGG
PGSGNNSSSGGASGAPSAVAAGGANAAVAGGAGGGGGAGAATAAATATGA
IGATNAGGANVTDSASFLDH

BO09258.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
sgg-PC 514 CG2621-PC 1..514 1..514 2648 100 Plus
sgg-PF 514 CG2621-PF 1..514 1..514 2648 100 Plus
sgg-PE 514 CG2621-PE 1..514 1..514 2648 100 Plus
sgg-PB 514 CG2621-PB 1..514 1..514 2648 100 Plus
sgg-PI 514 CG2621-PI 1..514 1..514 2648 100 Plus