Clone BO09259 Report

Search the DGRC for BO09259

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:59
Vector:pDNR-Dual
Associated Gene/Transcriptsut1-RA
Protein status:BO09259.pep: validated full length
Sequenced Size:1555

Clone Sequence Records

BO09259.3prime Sequence

969 bp (829 high quality bases) assembled on 2006-01-18

> BO09259.3prime
ATGGTCTAGAAAGCTTGCTTTGACTTTGGAGCGGAAGCCCTTCGATACGA
GGGGAGCCACCTCTGAGGGATCGCGTCCCCGCGTTTCCGGCAGATAGAAT
TTCGTAAGCAAGAAGAGCAGCACGCAGGTAATGGAGAAGGGCAGGAAGAC
GAAGGCGCCCCATGCGTTCTGCAGCAGGGGGAACGATATGCCAATTATGA
AATTGCACGTCCACGAGGCCAAGCTGCCCATCGACATGGCCACGGAGCGG
GGAGCCACCTCGAACAGTTCTGCGCCAATAAAGTAGGGAATGGGGCCCAG
CCCGAATTGGTAGAAGAATATGTAACCCATGATGCAGACGATGCAGGCAA
TGGCAAACCAGCTAACTTGGTCAATATAAAACAACACAAAGGCTATGGTG
AACAGAAAAACGGAGCAAAGAGCACAGGAGAACATCATCAAGGTTCGTCT
ATTGCACTTGGCCATTAGCCAAGGTCCCAACAAAGAGACAGCTAGATTCA
GGCAACCAGCGCCCAAATTGGCCCATTGAGCATCCACTGTGGACAGTCCG
GCCTTTTCGAAGATGCTGACCGAGTAATAAAATATCGCATTAATGCCCGA
CAACTGCTGACCACCATGGAAGCAGCAGACAATGATCAGGGGCAATGTGA
GACGAGGATCGCGAAGCACATCGCAAAAGCTGCTCGTCTGCACCTTGGCA
TTAGACTCTGCCTCCATCTCGGCCATTTCTTGGGCGATAAGCTCCTCCGC
ATCCTTGCCCCGCAGCCGTTGAAGCTCCCGCTTGGCAGCTGCGCGATTTC
CTTTAACAATATACAGGAACTTGGGACTCTCGGGAAAGAGGTATGATGGC
AGGTAGCAGACCAGGATAAGGAACATGTAGGCAGTCAGGGCGTAGTGCCA
GAGATCCTCAGTACCGAAGACATTGGCCAAACTGCAAACCTGCCCCACTA
CCACGCCCCCCGTCACGCC

BO09259.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8714-PA 1524 sut1-RA 571..1521 969..19 4730 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 888..1838 969..19 4740 99.9 Minus
CG7882-RC 2266 CG7882-RC 1435..1751 363..47 430 76.5 Minus
CG7882-RA 1802 CG7882-RA 1337..1653 363..47 430 76.5 Minus
CG7882-RC 2266 CG7882-RC 1159..1258 639..540 200 80 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085258..8085641 969..586 1905 99.7 Minus
2R 25286936 2R 8086323..8086577 273..19 1275 100 Minus
2R 25286936 2R 8085699..8085913 586..372 1075 100 Minus
2R 25286936 2R 8085982..8086084 372..270 515 100 Minus
2R 25286936 2R 5959443..5959668 272..47 320 76.1 Minus
Blast to na_te.dros performed on 2015-01-31 14:51:37 has no hits.

BO09259.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:57 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-PA 571..1524 18..969 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:01 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8714-PA 571..1524 18..969 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:09 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 888..1838 19..969 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:07 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 888..1838 19..969 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:07 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8085258..8085641 586..969 99 -> Minus
2R 8085700..8085912 373..585 100 -> Minus
2R 8085982..8086084 270..372 100 -> Minus
2R 8086327..8086577 19..269 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:09 Download gff for BO09259.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3973487..3973589 270..372 100 -> Minus
arm_2R 3972763..3973146 586..969 99 -> Minus
arm_2R 3973205..3973417 373..585 100 -> Minus
arm_2R 3973832..3974082 19..269 100   Minus

BO09259.5prime Sequence

869 bp (821 high quality bases) assembled on 2006-01-18

> BO09259.5prime
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGA

BO09259.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8714-PA 1524 sut1-RA 1..853 17..869 4265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 318..1170 17..869 4265 100 Plus
slv-RC 1247 CG8717-RC 1..65 81..17 325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085044..8085540 373..869 2485 100 Plus
2R 25286936 2R 8084690..8084853 213..376 820 100 Plus
2R 25286936 2R 8084528..8084639 107..218 545 99.1 Plus
2R 25286936 2R 8083293..8083385 17..109 465 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:34:17 has no hits.

BO09259.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:58 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:03 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8714-PA 1..852 17..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:12 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 311..1169 9..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:42 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 311..1169 9..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:42 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8083286..8083385 9..109 96 -> Plus
2R 8084531..8084635 110..214 100 -> Plus
2R 8084692..8084852 215..375 100 -> Plus
2R 8085047..8085539 376..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:12 Download gff for BO09259.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3970791..3970890 9..109 96 -> Plus
arm_2R 3972036..3972140 110..214 100 -> Plus
arm_2R 3972197..3972357 215..375 100 -> Plus
arm_2R 3972552..3973044 376..868 100   Plus

BO09259.complete Sequence

1555 bp assembled on 2006-10-10

GenBank Submission: FJ631451

> BO09259.complete
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCATGGTGGTCAGC
AGTTGTCGGGCATTAATGCGATATTTTATTACTCGGTCAGCATCTTCGAA
AAGGCCGGACTGTCCACAGTGGATGCTCAATGGGCCAATTTGGGCGCTGG
TTGCCTGAATCTAGCTGTCTCTTTGTTGGGACCTTGGCTAATGGCCAAGT
GCAATAGACGAACCTTGATGATGTTCTCCTGTGCTCTTTGCTCCGTTTTT
CTGTTCACCATAGCCTTTGTGTTGTTTTATATTGACCAAGTTAGCTGGTT
TGCCATTGCCTGCATCGTCTGCATCATGGGTTACATATTCTTCTACCAAT
TCGGGCTGGGCCCCATTCCCTACTTTATTGGCGCAGAACTGTTCGAGGTG
GCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTGGCCTCGTGGACGTG
CAATTTCATAATTGGCATATCGTTCCCCCTGCTGCAGAACGCATGGGGCG
CCTTCGTCTTCCTGCCCTTCTCCATTACCTGCGTGCTGCTCTTCTTGCTT
ACGAAATTCTATCTGCCGGAAACGCGGGGACGCGATCCCTCAGAGGTGGC
TCCCCTCGTATCGAAGGGCTTCCGCTCCAAAGTCAAAGCAAGCTTTCTAG
ACCAT

BO09259.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 1524 CG8714-PA 1..1521 17..1537 7605 100 Plus
CG7882-RC 1551 CG7882-PC 1183..1499 1193..1509 430 75.7 Plus
CG7882-RA 1551 CG7882-PA 1183..1499 1193..1509 430 75.7 Plus
CG7882-RC 1551 CG7882-PC 907..1006 917..1016 200 80 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-RA 2412 CG8714-RA 318..1838 17..1537 7605 100 Plus
CG7882-RC 2266 CG7882-RC 1435..1751 1193..1509 430 75.7 Plus
CG7882-RA 1802 CG7882-RA 1337..1653 1193..1509 430 75.7 Plus
CG7882-RC 2266 CG7882-RC 1159..1258 917..1016 200 80 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8085044..8085641 373..970 2990 100 Plus
2R 25286936 2R 8086323..8086577 1283..1537 1275 100 Plus
2R 25286936 2R 8085699..8085913 970..1184 1075 100 Plus
2R 25286936 2R 8084690..8084853 213..376 820 100 Plus
2R 25286936 2R 8084528..8084639 107..218 545 99.1 Plus
2R 25286936 2R 8085982..8086084 1184..1286 515 100 Plus
2R 25286936 2R 8083293..8083385 17..109 465 100 Plus
2R 25286936 2R 5959443..5959668 1284..1509 320 76.1 Plus
Blast to na_te.dros performed on 2014-11-27 15:10:40 has no hits.

BO09259.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:45 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 1..1524 17..1538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:59 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 309..1836 9..1537 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:09 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 318..1838 17..1539 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:45 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 309..1836 9..1537 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:38 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
sut1-RA 318..1838 17..1539 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:38 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8084692..8084852 215..375 100 -> Plus
2R 8083293..8083385 17..109 100 -> Plus
2R 8084531..8084635 110..214 100 -> Plus
2R 8085047..8085641 376..970 100 -> Plus
2R 8085700..8085912 971..1183 100 -> Plus
2R 8085982..8086084 1184..1286 100 -> Plus
2R 8086327..8086577 1287..1539 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:09 Download gff for BO09259.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3972197..3972357 215..375 100 -> Plus
arm_2R 3970798..3970890 17..109 100 -> Plus
arm_2R 3972036..3972140 110..214 100 -> Plus
arm_2R 3972552..3973146 376..970 100 -> Plus
arm_2R 3973205..3973417 971..1183 100 -> Plus
arm_2R 3973487..3973589 1184..1286 100 -> Plus
arm_2R 3973832..3974082 1287..1539 99   Plus

BO09259.pep Sequence

Translation from 16 to 1555

> BO09259.pep
MATKSQPAEAQQLYPQPNRVELLSAQTDPSQKPRWGNLLLLVALATTFGG
AVSTGYCIGVINAPSKLMKVWCNQTLHDTYGSNLSAGGLDLLWSCVVSVF
LVGGAIGSLGGAGAANKFGRKACFLICGALFTVGAVLFFFCRAASSVEML
VIGRFVVGLASGLVTATLPMYLSEVAPMALRGTLGVFIAVGVTGGVVVGQ
VCSLANVFGTEDLWHYALTAYMFLILVCYLPSYLFPESPKFLYIVKGNRA
AAKRELQRLRGKDAEELIAQEMAEMEAESNAKVQTSSFCDVLRDPRLTLP
LIIVCCFHGGQQLSGINAIFYYSVSIFEKAGLSTVDAQWANLGAGCLNLA
VSLLGPWLMAKCNRRTLMMFSCALCSVFLFTIAFVLFYIDQVSWFAIACI
VCIMGYIFFYQFGLGPIPYFIGAELFEVAPRSVAMSMGSLASWTCNFIIG
ISFPLLQNAWGAFVFLPFSITCVLLFLLTKFYLPETRGRDPSEVAPLVSK
GFRSKVKASFLDH

BO09259.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
sut1-PA 507 CG8714-PA 1..507 1..507 2633 100 Plus
CG7882-PC 516 CG7882-PC 32..508 31..506 1474 58.5 Plus
CG7882-PA 516 CG7882-PA 32..508 31..506 1474 58.5 Plus
sut2-PA 491 CG17975-PA 9..490 29..506 1175 46.9 Plus
sut3-PA 476 CG17976-PA 5..476 32..507 992 42.2 Plus