Clone Sequence Records
BO09259.3prime Sequence
969 bp (829 high quality bases) assembled on 2006-01-18
> BO09259.3prime
ATGGTCTAGAAAGCTTGCTTTGACTTTGGAGCGGAAGCCCTTCGATACGA
GGGGAGCCACCTCTGAGGGATCGCGTCCCCGCGTTTCCGGCAGATAGAAT
TTCGTAAGCAAGAAGAGCAGCACGCAGGTAATGGAGAAGGGCAGGAAGAC
GAAGGCGCCCCATGCGTTCTGCAGCAGGGGGAACGATATGCCAATTATGA
AATTGCACGTCCACGAGGCCAAGCTGCCCATCGACATGGCCACGGAGCGG
GGAGCCACCTCGAACAGTTCTGCGCCAATAAAGTAGGGAATGGGGCCCAG
CCCGAATTGGTAGAAGAATATGTAACCCATGATGCAGACGATGCAGGCAA
TGGCAAACCAGCTAACTTGGTCAATATAAAACAACACAAAGGCTATGGTG
AACAGAAAAACGGAGCAAAGAGCACAGGAGAACATCATCAAGGTTCGTCT
ATTGCACTTGGCCATTAGCCAAGGTCCCAACAAAGAGACAGCTAGATTCA
GGCAACCAGCGCCCAAATTGGCCCATTGAGCATCCACTGTGGACAGTCCG
GCCTTTTCGAAGATGCTGACCGAGTAATAAAATATCGCATTAATGCCCGA
CAACTGCTGACCACCATGGAAGCAGCAGACAATGATCAGGGGCAATGTGA
GACGAGGATCGCGAAGCACATCGCAAAAGCTGCTCGTCTGCACCTTGGCA
TTAGACTCTGCCTCCATCTCGGCCATTTCTTGGGCGATAAGCTCCTCCGC
ATCCTTGCCCCGCAGCCGTTGAAGCTCCCGCTTGGCAGCTGCGCGATTTC
CTTTAACAATATACAGGAACTTGGGACTCTCGGGAAAGAGGTATGATGGC
AGGTAGCAGACCAGGATAAGGAACATGTAGGCAGTCAGGGCGTAGTGCCA
GAGATCCTCAGTACCGAAGACATTGGCCAAACTGCAAACCTGCCCCACTA
CCACGCCCCCCGTCACGCC
BO09259.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8714-PA | 1524 | sut1-RA | 571..1521 | 969..19 | 4730 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 888..1838 | 969..19 | 4740 | 99.9 | Minus |
CG7882-RC | 2266 | CG7882-RC | 1435..1751 | 363..47 | 430 | 76.5 | Minus |
CG7882-RA | 1802 | CG7882-RA | 1337..1653 | 363..47 | 430 | 76.5 | Minus |
CG7882-RC | 2266 | CG7882-RC | 1159..1258 | 639..540 | 200 | 80 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085258..8085641 | 969..586 | 1905 | 99.7 | Minus |
2R | 25286936 | 2R | 8086323..8086577 | 273..19 | 1275 | 100 | Minus |
2R | 25286936 | 2R | 8085699..8085913 | 586..372 | 1075 | 100 | Minus |
2R | 25286936 | 2R | 8085982..8086084 | 372..270 | 515 | 100 | Minus |
2R | 25286936 | 2R | 5959443..5959668 | 272..47 | 320 | 76.1 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:51:37 has no hits.
BO09259.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:57 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-PA | 571..1524 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:01 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8714-PA | 571..1524 | 18..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:09 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 888..1838 | 19..969 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:07 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 888..1838 | 19..969 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:07 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8085258..8085641 | 586..969 | 99 | -> | Minus |
2R | 8085700..8085912 | 373..585 | 100 | -> | Minus |
2R | 8085982..8086084 | 270..372 | 100 | -> | Minus |
2R | 8086327..8086577 | 19..269 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:09 Download gff for
BO09259.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3973487..3973589 | 270..372 | 100 | -> | Minus |
arm_2R | 3972763..3973146 | 586..969 | 99 | -> | Minus |
arm_2R | 3973205..3973417 | 373..585 | 100 | -> | Minus |
arm_2R | 3973832..3974082 | 19..269 | 100 | | Minus |
BO09259.5prime Sequence
869 bp (821 high quality bases) assembled on 2006-01-18
> BO09259.5prime
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGA
BO09259.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8714-PA | 1524 | sut1-RA | 1..853 | 17..869 | 4265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 318..1170 | 17..869 | 4265 | 100 | Plus |
slv-RC | 1247 | CG8717-RC | 1..65 | 81..17 | 325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085044..8085540 | 373..869 | 2485 | 100 | Plus |
2R | 25286936 | 2R | 8084690..8084853 | 213..376 | 820 | 100 | Plus |
2R | 25286936 | 2R | 8084528..8084639 | 107..218 | 545 | 99.1 | Plus |
2R | 25286936 | 2R | 8083293..8083385 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:34:17 has no hits.
BO09259.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:58 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:03 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8714-PA | 1..852 | 17..868 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:35:12 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 311..1169 | 9..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:11:42 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 311..1169 | 9..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:11:42 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8083286..8083385 | 9..109 | 96 | -> | Plus |
2R | 8084531..8084635 | 110..214 | 100 | -> | Plus |
2R | 8084692..8084852 | 215..375 | 100 | -> | Plus |
2R | 8085047..8085539 | 376..868 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:35:12 Download gff for
BO09259.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3970791..3970890 | 9..109 | 96 | -> | Plus |
arm_2R | 3972036..3972140 | 110..214 | 100 | -> | Plus |
arm_2R | 3972197..3972357 | 215..375 | 100 | -> | Plus |
arm_2R | 3972552..3973044 | 376..868 | 100 | | Plus |
BO09259.complete Sequence
1555 bp assembled on 2006-10-10
GenBank Submission: FJ631451
> BO09259.complete
GAAGTTATCAGTCGACATGGCCACCAAAAGCCAGCCGGCGGAGGCTCAAC
AATTGTACCCGCAGCCCAACAGAGTGGAACTGCTCTCGGCGCAGACGGAT
CCCAGCCAGAAACCGCGATGGGGCAACCTCCTGCTGCTGGTGGCCCTGGC
AACCACATTTGGCGGCGCCGTTTCCACCGGCTACTGCATAGGCGTTATCA
ACGCCCCCTCGAAGCTGATGAAAGTTTGGTGTAATCAGACCCTGCACGAC
ACCTACGGGAGTAACCTCAGCGCAGGCGGTCTAGATCTCTTGTGGTCGTG
CGTCGTTTCTGTGTTCCTGGTCGGAGGCGCCATCGGTTCGCTGGGCGGAG
CTGGAGCAGCCAATAAATTTGGCAGGAAAGCATGCTTTCTTATCTGCGGC
GCCCTGTTCACCGTGGGAGCGGTGCTATTCTTCTTCTGCCGAGCAGCCAG
CTCCGTGGAGATGCTGGTGATCGGAAGGTTTGTTGTGGGCCTTGCCTCCG
GCCTCGTGACCGCCACCCTGCCCATGTACTTGTCCGAGGTGGCTCCAATG
GCTCTGCGCGGCACTCTGGGAGTCTTCATTGCCGTGGGCGTGACGGGGGG
CGTGGTAGTGGGGCAGGTCTGCAGTTTGGCCAATGTCTTCGGTACTGAGG
ATCTCTGGCACTACGCCCTGACTGCCTACATGTTCCTTATCCTGGTCTGC
TACCTGCCATCATACCTCTTTCCCGAGAGTCCCAAGTTCCTGTATATTGT
TAAAGGAAATCGCGCAGCTGCCAAGCGGGAGCTTCAACGGCTGCGGGGCA
AGGATGCGGAGGAGCTTATCGCCCAAGAAATGGCCGAGATGGAGGCAGAG
TCTAATGCCAAGGTGCAGACGAGCAGCTTTTGCGATGTGCTTCGCGATCC
TCGTCTCACATTGCCCCTGATCATTGTCTGCTGCTTCCATGGTGGTCAGC
AGTTGTCGGGCATTAATGCGATATTTTATTACTCGGTCAGCATCTTCGAA
AAGGCCGGACTGTCCACAGTGGATGCTCAATGGGCCAATTTGGGCGCTGG
TTGCCTGAATCTAGCTGTCTCTTTGTTGGGACCTTGGCTAATGGCCAAGT
GCAATAGACGAACCTTGATGATGTTCTCCTGTGCTCTTTGCTCCGTTTTT
CTGTTCACCATAGCCTTTGTGTTGTTTTATATTGACCAAGTTAGCTGGTT
TGCCATTGCCTGCATCGTCTGCATCATGGGTTACATATTCTTCTACCAAT
TCGGGCTGGGCCCCATTCCCTACTTTATTGGCGCAGAACTGTTCGAGGTG
GCTCCCCGCTCCGTGGCCATGTCGATGGGCAGCTTGGCCTCGTGGACGTG
CAATTTCATAATTGGCATATCGTTCCCCCTGCTGCAGAACGCATGGGGCG
CCTTCGTCTTCCTGCCCTTCTCCATTACCTGCGTGCTGCTCTTCTTGCTT
ACGAAATTCTATCTGCCGGAAACGCGGGGACGCGATCCCTCAGAGGTGGC
TCCCCTCGTATCGAAGGGCTTCCGCTCCAAAGTCAAAGCAAGCTTTCTAG
ACCAT
BO09259.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 1524 | CG8714-PA | 1..1521 | 17..1537 | 7605 | 100 | Plus |
CG7882-RC | 1551 | CG7882-PC | 1183..1499 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RA | 1551 | CG7882-PA | 1183..1499 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RC | 1551 | CG7882-PC | 907..1006 | 917..1016 | 200 | 80 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-RA | 2412 | CG8714-RA | 318..1838 | 17..1537 | 7605 | 100 | Plus |
CG7882-RC | 2266 | CG7882-RC | 1435..1751 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RA | 1802 | CG7882-RA | 1337..1653 | 1193..1509 | 430 | 75.7 | Plus |
CG7882-RC | 2266 | CG7882-RC | 1159..1258 | 917..1016 | 200 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8085044..8085641 | 373..970 | 2990 | 100 | Plus |
2R | 25286936 | 2R | 8086323..8086577 | 1283..1537 | 1275 | 100 | Plus |
2R | 25286936 | 2R | 8085699..8085913 | 970..1184 | 1075 | 100 | Plus |
2R | 25286936 | 2R | 8084690..8084853 | 213..376 | 820 | 100 | Plus |
2R | 25286936 | 2R | 8084528..8084639 | 107..218 | 545 | 99.1 | Plus |
2R | 25286936 | 2R | 8085982..8086084 | 1184..1286 | 515 | 100 | Plus |
2R | 25286936 | 2R | 8083293..8083385 | 17..109 | 465 | 100 | Plus |
2R | 25286936 | 2R | 5959443..5959668 | 1284..1509 | 320 | 76.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:40 has no hits.
BO09259.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:50:45 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 1..1524 | 17..1538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:05:59 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 309..1836 | 9..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:09 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 318..1838 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:50:45 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 309..1836 | 9..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:38 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sut1-RA | 318..1838 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:38 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8084692..8084852 | 215..375 | 100 | -> | Plus |
2R | 8083293..8083385 | 17..109 | 100 | -> | Plus |
2R | 8084531..8084635 | 110..214 | 100 | -> | Plus |
2R | 8085047..8085641 | 376..970 | 100 | -> | Plus |
2R | 8085700..8085912 | 971..1183 | 100 | -> | Plus |
2R | 8085982..8086084 | 1184..1286 | 100 | -> | Plus |
2R | 8086327..8086577 | 1287..1539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:09 Download gff for
BO09259.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3972197..3972357 | 215..375 | 100 | -> | Plus |
arm_2R | 3970798..3970890 | 17..109 | 100 | -> | Plus |
arm_2R | 3972036..3972140 | 110..214 | 100 | -> | Plus |
arm_2R | 3972552..3973146 | 376..970 | 100 | -> | Plus |
arm_2R | 3973205..3973417 | 971..1183 | 100 | -> | Plus |
arm_2R | 3973487..3973589 | 1184..1286 | 100 | -> | Plus |
arm_2R | 3973832..3974082 | 1287..1539 | 99 | | Plus |
BO09259.pep Sequence
Translation from 16 to 1555
> BO09259.pep
MATKSQPAEAQQLYPQPNRVELLSAQTDPSQKPRWGNLLLLVALATTFGG
AVSTGYCIGVINAPSKLMKVWCNQTLHDTYGSNLSAGGLDLLWSCVVSVF
LVGGAIGSLGGAGAANKFGRKACFLICGALFTVGAVLFFFCRAASSVEML
VIGRFVVGLASGLVTATLPMYLSEVAPMALRGTLGVFIAVGVTGGVVVGQ
VCSLANVFGTEDLWHYALTAYMFLILVCYLPSYLFPESPKFLYIVKGNRA
AAKRELQRLRGKDAEELIAQEMAEMEAESNAKVQTSSFCDVLRDPRLTLP
LIIVCCFHGGQQLSGINAIFYYSVSIFEKAGLSTVDAQWANLGAGCLNLA
VSLLGPWLMAKCNRRTLMMFSCALCSVFLFTIAFVLFYIDQVSWFAIACI
VCIMGYIFFYQFGLGPIPYFIGAELFEVAPRSVAMSMGSLASWTCNFIIG
ISFPLLQNAWGAFVFLPFSITCVLLFLLTKFYLPETRGRDPSEVAPLVSK
GFRSKVKASFLDH
BO09259.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sut1-PA | 507 | CG8714-PA | 1..507 | 1..507 | 2633 | 100 | Plus |
CG7882-PC | 516 | CG7882-PC | 32..508 | 31..506 | 1474 | 58.5 | Plus |
CG7882-PA | 516 | CG7882-PA | 32..508 | 31..506 | 1474 | 58.5 | Plus |
sut2-PA | 491 | CG17975-PA | 9..490 | 29..506 | 1175 | 46.9 | Plus |
sut3-PA | 476 | CG17976-PA | 5..476 | 32..507 | 992 | 42.2 | Plus |