Clone Sequence Records
BO09260.3prime Sequence
832 bp (831 high quality bases) assembled on 2006-01-18
> BO09260.3prime
ATGGTCTAGAAAGCTTGCGGAGAGAACTGGTGCAGTGCATCCGTTATTCA
GGCGATACTCGGCATAGACCAGTCCGGTGTTGTGCCAGTGATAGAAGGCG
GCCACGATGATCAGGTGCCACCAGTTGTGCGAATGCCCAACGAAGTCCAC
CTTGCCGGTGAACCAGCGCTCCGGAATCTTGGCCGCATAGAAAACGAAGG
CGACGAGGCAGAGCAAGTACATGAGCACGATGCGGGGCACCATCAGCCTG
ACTAGCTCGTTCTCCAGACCGCCCATGGCCACCGCCCAGTGGCCCAGAGG
TATGATTCCATAGGCAGACCAGAGTAGCAGCACCGCCACCTTGCCGTTCA
TGGACACATTCAAACGGGGTATCTGCACGGCAATGGCCAGTGCGAACATG
CCCAGTGCAATCGTGGAGTACAGGGTGCGCAGGAAGGTGTGGCACCAGAA
GGCATAGTACATGCCACTGATATAGATGGCCACCAGCGACAGCGAAATGC
CCAGGAAGTCAACGGACAGAAAGAGCTCGTAGTGCTCCTCCGATTTGCAG
GAGAAGATGTGGTATATGGCGGACATCAGCATGCACAGACAGAAGCAGAC
CAGCAGGCAGACCACCAGCACCTGGTCGCTCAGGGAGGCGTGGAGGCGCA
GGAACTGCAGATCGAAGATGGTCAGTCCAATGAACAGGATGCAACCGGCC
AGATGGCTCCAGATGTTGATCGTCTCATTGGTCCACCAGAAAATGCTCTG
CAGGCACATTTTTGTGGAAGGTAGAAAGGTGCGGTATCCGCGACGAATGT
ACGGGTTGAACTTCAGGTGACTGGGGGCATCA
BO09260.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PA | 1056 | CG7530-RA | 240..1053 | 832..19 | 4070 | 100 | Minus |
CG7530-PB | 1056 | CG7530-RB | 240..1053 | 832..19 | 4070 | 100 | Minus |
CG7530-PC | 1056 | CG7530-RC | 240..1053 | 832..19 | 4070 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:48:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RD | 1647 | CG7530-RD | 432..1245 | 832..19 | 4070 | 100 | Minus |
CG7530-RC | 1704 | CG7530-RC | 489..1302 | 832..19 | 4070 | 100 | Minus |
CG7530-RB | 1574 | CG7530-RB | 359..1172 | 832..19 | 4070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 247..721 | 2375 | 100 | Plus |
3R | 32079331 | 3R | 14725162..14725390 | 19..247 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 14726040..14726147 | 721..828 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 06:48:32 has no hits.
BO09260.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:59 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PA | 241..1056 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:05 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PC | 241..1056 | 18..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:38 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RB | 360..1180 | 11..831 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:14 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RB | 360..1180 | 11..831 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:14 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14725154..14725389 | 11..246 | 98 | <- | Plus |
3R | 14725457..14725930 | 247..720 | 100 | <- | Plus |
3R | 14726040..14726148 | 721..831 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:38 Download gff for
BO09260.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10550876..10551111 | 11..246 | 98 | <- | Plus |
arm_3R | 10551179..10551652 | 247..720 | 100 | <- | Plus |
arm_3R | 10551762..10551870 | 721..831 | 98 | | Plus |
BO09260.5prime Sequence
903 bp (804 high quality bases) assembled on 2006-01-18
> BO09260.5prime
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGC
BO09260.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PA | 1056 | CG7530-RA | 1..887 | 17..903 | 4435 | 100 | Plus |
CG7530-PB | 1056 | CG7530-RB | 1..887 | 17..903 | 4435 | 100 | Plus |
CG7530-PC | 1056 | CG7530-RC | 1..887 | 17..903 | 4435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1704 | CG7530-RC | 249..1136 | 16..903 | 4440 | 100 | Plus |
CG7530-RB | 1574 | CG7530-RB | 119..1006 | 16..903 | 4440 | 100 | Plus |
CG7530-RA | 2349 | CG7530-RA | 894..1781 | 16..903 | 4440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 841..367 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 14727189..14727328 | 260..121 | 700 | 100 | Minus |
3R | 32079331 | 3R | 14726040..14726147 | 367..260 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14730511..14730616 | 121..16 | 530 | 100 | Minus |
3R | 32079331 | 3R | 14725328..14725390 | 903..841 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 13:23:12 has no hits.
BO09260.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:00 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PA | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:07 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-PC | 1..887 | 17..903 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:58 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 883..1781 | 6..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:08 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 883..1781 | 6..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:08 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14730511..14730627 | 6..121 | 96 | | Minus |
3R | 14725328..14725389 | 842..903 | 100 | <- | Minus |
3R | 14725457..14725930 | 368..841 | 100 | <- | Minus |
3R | 14726040..14726147 | 260..367 | 100 | <- | Minus |
3R | 14727190..14727327 | 122..259 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:58 Download gff for
BO09260.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10552912..10553049 | 122..259 | 100 | <- | Minus |
arm_3R | 10551050..10551111 | 842..903 | 100 | <- | Minus |
arm_3R | 10551179..10551652 | 368..841 | 100 | <- | Minus |
arm_3R | 10551762..10551869 | 260..367 | 100 | <- | Minus |
arm_3R | 10556233..10556349 | 6..121 | 96 | | Minus |
BO09260.complete Sequence
1087 bp (1087 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631452
> BO09260.complete
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGCCAAGATTCCGGAGCGCTGGTTCACCGGCAAGGTGGACTTCGTTG
GGCATTCGCACAACTGGTGGCACCTGATCATCGTGGCCGCCTTCTATCAC
TGGCACAACACCGGACTGGTCTATGCCGAGTATCGCCTGAATAACGGATG
CACTGCACCAGTTCTCTCCGCAAGCTTTCTAGACCAT
BO09260.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1056 | CG7530-PC | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG7530-RB | 1056 | CG7530-PB | 1..1053 | 17..1069 | 5265 | 100 | Plus |
CG7530-RA | 1056 | CG7530-PA | 1..1053 | 17..1069 | 5265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-RC | 1704 | CG7530-RC | 249..1302 | 16..1069 | 5270 | 100 | Plus |
CG7530-RB | 1574 | CG7530-RB | 119..1172 | 16..1069 | 5270 | 100 | Plus |
CG7530-RA | 2349 | CG7530-RA | 894..1947 | 16..1069 | 5270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14725457..14725931 | 841..367 | 2375 | 100 | Minus |
3R | 32079331 | 3R | 14725162..14725390 | 1069..841 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 14727189..14727328 | 260..121 | 700 | 100 | Minus |
3R | 32079331 | 3R | 14726040..14726147 | 367..260 | 540 | 100 | Minus |
3R | 32079331 | 3R | 14730511..14730616 | 121..16 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:37:40 has no hits.
BO09260.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:04 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 1..1056 | 17..1070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:54 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 238..1310 | 6..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:30 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 895..1947 | 17..1071 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:04 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RC | 238..1310 | 6..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:09 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7530-RA | 895..1947 | 17..1071 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:09 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14725160..14725389 | 842..1071 | 99 | <- | Minus |
3R | 14725457..14725930 | 368..841 | 100 | <- | Minus |
3R | 14726040..14726147 | 260..367 | 100 | <- | Minus |
3R | 14727190..14727327 | 122..259 | 100 | <- | Minus |
3R | 14730511..14730615 | 17..121 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:30 Download gff for
BO09260.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10550882..10551111 | 842..1071 | 99 | <- | Minus |
arm_3R | 10551179..10551652 | 368..841 | 100 | <- | Minus |
arm_3R | 10551762..10551869 | 260..367 | 100 | <- | Minus |
arm_3R | 10552912..10553049 | 122..259 | 100 | <- | Minus |
arm_3R | 10556233..10556337 | 17..121 | 100 | | Minus |
BO09260.pep Sequence
Translation from 16 to 1087
> BO09260.pep
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
SASFLDH
BO09260.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7530-PC | 351 | CG7530-PC | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PB | 351 | CG7530-PB | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PA | 351 | CG7530-PA | 1..351 | 1..351 | 1900 | 100 | Plus |
CG7530-PD | 341 | CG7530-PD | 26..341 | 36..351 | 1713 | 100 | Plus |
AdipoR-PE | 444 | CG5315-PE | 85..444 | 1..354 | 421 | 28.5 | Plus |