Clone BO09260 Report

Search the DGRC for BO09260

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG7530-RA
Protein status:BO09260.pep: validated full length
Sequenced Size:1087

Clone Sequence Records

BO09260.3prime Sequence

832 bp (831 high quality bases) assembled on 2006-01-18

> BO09260.3prime
ATGGTCTAGAAAGCTTGCGGAGAGAACTGGTGCAGTGCATCCGTTATTCA
GGCGATACTCGGCATAGACCAGTCCGGTGTTGTGCCAGTGATAGAAGGCG
GCCACGATGATCAGGTGCCACCAGTTGTGCGAATGCCCAACGAAGTCCAC
CTTGCCGGTGAACCAGCGCTCCGGAATCTTGGCCGCATAGAAAACGAAGG
CGACGAGGCAGAGCAAGTACATGAGCACGATGCGGGGCACCATCAGCCTG
ACTAGCTCGTTCTCCAGACCGCCCATGGCCACCGCCCAGTGGCCCAGAGG
TATGATTCCATAGGCAGACCAGAGTAGCAGCACCGCCACCTTGCCGTTCA
TGGACACATTCAAACGGGGTATCTGCACGGCAATGGCCAGTGCGAACATG
CCCAGTGCAATCGTGGAGTACAGGGTGCGCAGGAAGGTGTGGCACCAGAA
GGCATAGTACATGCCACTGATATAGATGGCCACCAGCGACAGCGAAATGC
CCAGGAAGTCAACGGACAGAAAGAGCTCGTAGTGCTCCTCCGATTTGCAG
GAGAAGATGTGGTATATGGCGGACATCAGCATGCACAGACAGAAGCAGAC
CAGCAGGCAGACCACCAGCACCTGGTCGCTCAGGGAGGCGTGGAGGCGCA
GGAACTGCAGATCGAAGATGGTCAGTCCAATGAACAGGATGCAACCGGCC
AGATGGCTCCAGATGTTGATCGTCTCATTGGTCCACCAGAAAATGCTCTG
CAGGCACATTTTTGTGGAAGGTAGAAAGGTGCGGTATCCGCGACGAATGT
ACGGGTTGAACTTCAGGTGACTGGGGGCATCA

BO09260.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PA 1056 CG7530-RA 240..1053 832..19 4070 100 Minus
CG7530-PB 1056 CG7530-RB 240..1053 832..19 4070 100 Minus
CG7530-PC 1056 CG7530-RC 240..1053 832..19 4070 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 06:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RD 1647 CG7530-RD 432..1245 832..19 4070 100 Minus
CG7530-RC 1704 CG7530-RC 489..1302 832..19 4070 100 Minus
CG7530-RB 1574 CG7530-RB 359..1172 832..19 4070 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 06:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 247..721 2375 100 Plus
3R 32079331 3R 14725162..14725390 19..247 1145 100 Plus
3R 32079331 3R 14726040..14726147 721..828 540 100 Plus
Blast to na_te.dros performed on 2015-02-01 06:48:32 has no hits.

BO09260.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:05:59 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PA 241..1056 18..831 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:05 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PC 241..1056 18..831 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:07:38 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RB 360..1180 11..831 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:38:14 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RB 360..1180 11..831 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:38:14 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14725154..14725389 11..246 98 <- Plus
3R 14725457..14725930 247..720 100 <- Plus
3R 14726040..14726148 721..831 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:07:38 Download gff for BO09260.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10550876..10551111 11..246 98 <- Plus
arm_3R 10551179..10551652 247..720 100 <- Plus
arm_3R 10551762..10551870 721..831 98   Plus

BO09260.5prime Sequence

903 bp (804 high quality bases) assembled on 2006-01-18

> BO09260.5prime
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGC

BO09260.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PA 1056 CG7530-RA 1..887 17..903 4435 100 Plus
CG7530-PB 1056 CG7530-RB 1..887 17..903 4435 100 Plus
CG7530-PC 1056 CG7530-RC 1..887 17..903 4435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1704 CG7530-RC 249..1136 16..903 4440 100 Plus
CG7530-RB 1574 CG7530-RB 119..1006 16..903 4440 100 Plus
CG7530-RA 2349 CG7530-RA 894..1781 16..903 4440 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 841..367 2375 100 Minus
3R 32079331 3R 14727189..14727328 260..121 700 100 Minus
3R 32079331 3R 14726040..14726147 367..260 540 100 Minus
3R 32079331 3R 14730511..14730616 121..16 530 100 Minus
3R 32079331 3R 14725328..14725390 903..841 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 13:23:12 has no hits.

BO09260.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:00 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PA 1..887 17..903 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:07 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-PC 1..887 17..903 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:22:58 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 883..1781 6..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:53:08 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 883..1781 6..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:53:08 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14730511..14730627 6..121 96   Minus
3R 14725328..14725389 842..903 100 <- Minus
3R 14725457..14725930 368..841 100 <- Minus
3R 14726040..14726147 260..367 100 <- Minus
3R 14727190..14727327 122..259 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:22:58 Download gff for BO09260.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10552912..10553049 122..259 100 <- Minus
arm_3R 10551050..10551111 842..903 100 <- Minus
arm_3R 10551179..10551652 368..841 100 <- Minus
arm_3R 10551762..10551869 260..367 100 <- Minus
arm_3R 10556233..10556349 6..121 96   Minus

BO09260.complete Sequence

1087 bp (1087 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631452

> BO09260.complete
GAAGTTATCAGTCGACATGAGTCCCCGTCCCCGTGAGATCCTCGAGGAAC
CAGAACTGTCGCTGGACTCGTCCTCCTGCTACTTGCGAAAATCTGGACAG
GATTGTGACGACAGCTGCCTGCTTGATGGCCAACTGGTTGCGGATTCGGT
GGACGCAGCGCATCAATTTCCGTCCAATGAGGAGCCCAATATTCTGGGGC
ATGGACCCAACTACGACGACAAGCTGTCCAAATTCAAATGGCTGTGCAAT
TTCGATGATGCCCCCAGTCACCTGAAGTTCAACCCGTACATTCGTCGCGG
ATACCGCACCTTTCTACCTTCCACAAAAATGTGCCTGCAGAGCATTTTCT
GGTGGACCAATGAGACGATCAACATCTGGAGCCATCTGGCCGGTTGCATC
CTGTTCATTGGACTGACCATCTTCGATCTGCAGTTCCTGCGCCTCCACGC
CTCCCTGAGCGACCAGGTGCTGGTGGTCTGCCTGCTGGTCTGCTTCTGTC
TGTGCATGCTGATGTCCGCCATATACCACATCTTCTCCTGCAAATCGGAG
GAGCACTACGAGCTCTTTCTGTCCGTTGACTTCCTGGGCATTTCGCTGTC
GCTGGTGGCCATCTATATCAGTGGCATGTACTATGCCTTCTGGTGCCACA
CCTTCCTGCGCACCCTGTACTCCACGATTGCACTGGGCATGTTCGCACTG
GCCATTGCCGTGCAGATACCCCGTTTGAATGTGTCCATGAACGGCAAGGT
GGCGGTGCTGCTACTCTGGTCTGCCTATGGAATCATACCTCTGGGCCACT
GGGCGGTGGCCATGGGCGGTCTGGAGAACGAGCTAGTCAGGCTGATGGTG
CCCCGCATCGTGCTCATGTACTTGCTCTGCCTCGTCGCCTTCGTTTTCTA
TGCGGCCAAGATTCCGGAGCGCTGGTTCACCGGCAAGGTGGACTTCGTTG
GGCATTCGCACAACTGGTGGCACCTGATCATCGTGGCCGCCTTCTATCAC
TGGCACAACACCGGACTGGTCTATGCCGAGTATCGCCTGAATAACGGATG
CACTGCACCAGTTCTCTCCGCAAGCTTTCTAGACCAT

BO09260.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1056 CG7530-PC 1..1053 17..1069 5265 100 Plus
CG7530-RB 1056 CG7530-PB 1..1053 17..1069 5265 100 Plus
CG7530-RA 1056 CG7530-PA 1..1053 17..1069 5265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-RC 1704 CG7530-RC 249..1302 16..1069 5270 100 Plus
CG7530-RB 1574 CG7530-RB 119..1172 16..1069 5270 100 Plus
CG7530-RA 2349 CG7530-RA 894..1947 16..1069 5270 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14725457..14725931 841..367 2375 100 Minus
3R 32079331 3R 14725162..14725390 1069..841 1145 100 Minus
3R 32079331 3R 14727189..14727328 260..121 700 100 Minus
3R 32079331 3R 14726040..14726147 367..260 540 100 Minus
3R 32079331 3R 14730511..14730616 121..16 530 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:37:40 has no hits.

BO09260.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:04 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 1..1056 17..1070 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:54 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 238..1310 6..1077 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:30 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 895..1947 17..1071 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:04 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RC 238..1310 6..1077 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:05:09 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
CG7530-RA 895..1947 17..1071 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:05:09 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14725160..14725389 842..1071 99 <- Minus
3R 14725457..14725930 368..841 100 <- Minus
3R 14726040..14726147 260..367 100 <- Minus
3R 14727190..14727327 122..259 100 <- Minus
3R 14730511..14730615 17..121 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:30 Download gff for BO09260.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10550882..10551111 842..1071 99 <- Minus
arm_3R 10551179..10551652 368..841 100 <- Minus
arm_3R 10551762..10551869 260..367 100 <- Minus
arm_3R 10552912..10553049 122..259 100 <- Minus
arm_3R 10556233..10556337 17..121 100   Minus

BO09260.pep Sequence

Translation from 16 to 1087

> BO09260.pep
MSPRPREILEEPELSLDSSSCYLRKSGQDCDDSCLLDGQLVADSVDAAHQ
FPSNEEPNILGHGPNYDDKLSKFKWLCNFDDAPSHLKFNPYIRRGYRTFL
PSTKMCLQSIFWWTNETINIWSHLAGCILFIGLTIFDLQFLRLHASLSDQ
VLVVCLLVCFCLCMLMSAIYHIFSCKSEEHYELFLSVDFLGISLSLVAIY
ISGMYYAFWCHTFLRTLYSTIALGMFALAIAVQIPRLNVSMNGKVAVLLL
WSAYGIIPLGHWAVAMGGLENELVRLMVPRIVLMYLLCLVAFVFYAAKIP
ERWFTGKVDFVGHSHNWWHLIIVAAFYHWHNTGLVYAEYRLNNGCTAPVL
SASFLDH

BO09260.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7530-PC 351 CG7530-PC 1..351 1..351 1900 100 Plus
CG7530-PB 351 CG7530-PB 1..351 1..351 1900 100 Plus
CG7530-PA 351 CG7530-PA 1..351 1..351 1900 100 Plus
CG7530-PD 341 CG7530-PD 26..341 36..351 1713 100 Plus
AdipoR-PE 444 CG5315-PE 85..444 1..354 421 28.5 Plus