Clone Sequence Records
BO09261.3prime Sequence
653 bp (652 high quality bases) assembled on 2006-01-18
> BO09261.3prime
ATGGTCTAGAAAGCTTGCAAGCAGACTGCACCTGGACAACCAACTGTCCT
TCGTCCGACTGTCCATCGGTTTCAGCTGATGGCCGCCCTTGGGTGGGTTG
TTCGCCTCCATTCGCTTTTCCGTTTTCGCTTTGATATCACTGGCTAGGGT
GAGGAAGGCTTCTTCCACGTTAATGCTGGCCTTCGCGGAGGTCTCCATGA
ACTTGATGCCATACTCGATGGCCAATTGTTCGCCGCGCTCTTTTGAAACC
TGTCGCTTATCGGTCAATTCGCACTTGTTTCCCAGCAGCATTTTCTCGAC
ATCGGCGGACGCATTTTCCTCGATATTCCTGATCCAGTTTTTGATGTTCT
CGAAGGACTTTTCTTGGGTTATGTCATATACCAGCATGATGCCCATGGCA
CCTCTGTAATAGGCCGTGGTGATTGTGCGAAAACGCTCCTGGCCGGCAGT
GTCCCATATCTGCAGCTTAATCTTCTTGTTATCTAATTCAATTGTTCTAA
TTTTAAAATCGATACCTATTGTGGATATAAACGTTGTGTTGAAGGCGTCC
TCAGAGAATCGGAAGAGGATGCAGGTCTTGCCCACTCCGGAGTCACCGAT
CAGGAGCAGTTTGAACAGATAGTCGTAGGTTTTGGCCATGTCGACTGATA
ACT
BO09261.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8287-PA | 624 | Rab8-RA | 1..621 | 639..19 | 3105 | 100 | Minus |
CG17060-PA | 615 | Rab10-RA | 165..209 | 478..434 | 150 | 93.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:52:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1195 | 639..19 | 3105 | 100 | Minus |
Rab8-RA | 2263 | CG8287-RA | 575..1195 | 639..19 | 3105 | 100 | Minus |
Rab8-RB | 1068 | CG8287-RB | 50..548 | 517..19 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 248..455 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 19868723..19868866 | 108..251 | 720 | 100 | Plus |
3L | 28110227 | 3L | 19870379..19870504 | 514..639 | 630 | 100 | Plus |
3L | 28110227 | 3L | 19868556..19868646 | 19..109 | 455 | 100 | Plus |
3L | 28110227 | 3L | 19869367..19869430 | 454..517 | 320 | 100 | Plus |
X | 23542271 | X | 20252275..20252409 | 478..344 | 315 | 82.2 | Minus |
X | 23542271 | X | 20251640..20251759 | 633..514 | 225 | 79.2 | Minus |
3R | 32079331 | 3R | 21114776..21114868 | 463..371 | 180 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:52:14 has no hits.
BO09261.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:01 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-PA | 1..624 | 16..639 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:08 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8287-PA | 1..624 | 16..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:14 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 19..647 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:11 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 19..647 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:11 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868556..19868645 | 19..108 | 100 | <- | Plus |
3L | 19868724..19868864 | 109..249 | 100 | <- | Plus |
3L | 19869103..19869307 | 250..454 | 100 | <- | Plus |
3L | 19869368..19869428 | 455..515 | 100 | <- | Plus |
3L | 19870381..19870510 | 516..647 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:14 Download gff for
BO09261.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861656..19861745 | 19..108 | 100 | <- | Plus |
arm_3L | 19861824..19861964 | 109..249 | 100 | <- | Plus |
arm_3L | 19862203..19862407 | 250..454 | 100 | <- | Plus |
arm_3L | 19862468..19862528 | 455..515 | 100 | <- | Plus |
arm_3L | 19863481..19863610 | 516..647 | 96 | | Plus |
BO09261.5prime Sequence
653 bp (652 high quality bases) assembled on 2006-01-17
> BO09261.5prime
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAG
ACC
BO09261.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8287-PA | 624 | Rab8-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
CG17060-PA | 615 | Rab10-RA | 165..209 | 178..222 | 150 | 93.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1195 | 17..637 | 3105 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1195 | 17..637 | 3105 | 100 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..548 | 139..637 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 408..201 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 548..405 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 142..17 | 630 | 100 | Minus |
3L | 28110227 | 3L | 19868556..19868646 | 637..547 | 455 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 202..139 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 178..312 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 23..142 | 225 | 79.2 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 193..285 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:32:01 has no hits.
BO09261.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:02 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-PA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:10 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8287-PA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:56 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:43 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 567..1195 | 9..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:43 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868556..19868645 | 548..637 | 100 | <- | Minus |
3L | 19868724..19868864 | 407..547 | 100 | <- | Minus |
3L | 19869103..19869307 | 202..406 | 100 | <- | Minus |
3L | 19869368..19869428 | 141..201 | 100 | <- | Minus |
3L | 19870381..19870510 | 9..140 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:56 Download gff for
BO09261.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861656..19861745 | 548..637 | 100 | <- | Minus |
arm_3L | 19861824..19861964 | 407..547 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 202..406 | 100 | <- | Minus |
arm_3L | 19862468..19862528 | 141..201 | 100 | <- | Minus |
arm_3L | 19863481..19863610 | 9..140 | 96 | | Minus |
BO09261.complete Sequence
655 bp (655 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631453
> BO09261.complete
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAG
ACCAT
BO09261.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 624 | CG8287-PC | 1..621 | 17..637 | 3105 | 100 | Plus |
Rab8-RA | 624 | CG8287-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Rab8-RB | 519 | CG8287-PB | 18..516 | 139..637 | 2495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-RC | 2043 | CG8287-RC | 575..1195 | 17..637 | 3105 | 100 | Plus |
Rab8-RA | 2263 | CG8287-RA | 575..1195 | 17..637 | 3105 | 100 | Plus |
Rab8-RB | 1068 | CG8287-RB | 50..548 | 139..637 | 2495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19869101..19869308 | 408..201 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 19868723..19868866 | 548..405 | 720 | 100 | Minus |
3L | 28110227 | 3L | 19870379..19870504 | 142..17 | 630 | 100 | Minus |
3L | 28110227 | 3L | 19868556..19868646 | 637..547 | 455 | 100 | Minus |
3L | 28110227 | 3L | 19869367..19869430 | 202..139 | 320 | 100 | Minus |
X | 23542271 | X | 20252275..20252409 | 178..312 | 315 | 82.2 | Plus |
X | 23542271 | X | 20251640..20251759 | 23..142 | 225 | 79.2 | Plus |
3R | 32079331 | 3R | 21114776..21114868 | 193..285 | 180 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:03:36 has no hits.
BO09261.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:21 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 1..624 | 17..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:26 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 546..1174 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:41 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 575..1195 | 17..639 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:22 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 546..1174 | 9..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:45 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab8-RA | 575..1195 | 17..639 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:45 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19868552..19868645 | 548..639 | 97 | <- | Minus |
3L | 19868724..19868864 | 407..547 | 100 | <- | Minus |
3L | 19869103..19869307 | 202..406 | 100 | <- | Minus |
3L | 19869368..19869428 | 141..201 | 100 | <- | Minus |
3L | 19870381..19870504 | 17..140 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:41 Download gff for
BO09261.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19861652..19861745 | 548..639 | 97 | <- | Minus |
arm_3L | 19861824..19861964 | 407..547 | 100 | <- | Minus |
arm_3L | 19862203..19862407 | 202..406 | 100 | <- | Minus |
arm_3L | 19862468..19862528 | 141..201 | 100 | <- | Minus |
arm_3L | 19863481..19863604 | 17..140 | 100 | | Minus |
BO09261.pep Sequence
Translation from 16 to 655
> BO09261.pep
MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTI
ELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIK
NWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMET
SAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGGHQLKPMDSRTKDSW
LSRCSLLASFLDH
BO09261.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab8-PC | 207 | CG8287-PC | 1..207 | 1..207 | 1061 | 100 | Plus |
Rab8-PA | 207 | CG8287-PA | 1..207 | 1..207 | 1061 | 100 | Plus |
Rab8-PB | 172 | CG8287-PB | 7..172 | 42..207 | 851 | 100 | Plus |
Rab10-PA | 204 | CG17060-PA | 4..182 | 3..181 | 706 | 76 | Plus |
Rab1-PA | 205 | CG3320-PA | 8..173 | 5..170 | 561 | 62 | Plus |