Clone BO09261 Report

Search the DGRC for BO09261

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptRab8-RA
Protein status:BO09261.pep: validated full length
Sequenced Size:655

Clone Sequence Records

BO09261.3prime Sequence

653 bp (652 high quality bases) assembled on 2006-01-18

> BO09261.3prime
ATGGTCTAGAAAGCTTGCAAGCAGACTGCACCTGGACAACCAACTGTCCT
TCGTCCGACTGTCCATCGGTTTCAGCTGATGGCCGCCCTTGGGTGGGTTG
TTCGCCTCCATTCGCTTTTCCGTTTTCGCTTTGATATCACTGGCTAGGGT
GAGGAAGGCTTCTTCCACGTTAATGCTGGCCTTCGCGGAGGTCTCCATGA
ACTTGATGCCATACTCGATGGCCAATTGTTCGCCGCGCTCTTTTGAAACC
TGTCGCTTATCGGTCAATTCGCACTTGTTTCCCAGCAGCATTTTCTCGAC
ATCGGCGGACGCATTTTCCTCGATATTCCTGATCCAGTTTTTGATGTTCT
CGAAGGACTTTTCTTGGGTTATGTCATATACCAGCATGATGCCCATGGCA
CCTCTGTAATAGGCCGTGGTGATTGTGCGAAAACGCTCCTGGCCGGCAGT
GTCCCATATCTGCAGCTTAATCTTCTTGTTATCTAATTCAATTGTTCTAA
TTTTAAAATCGATACCTATTGTGGATATAAACGTTGTGTTGAAGGCGTCC
TCAGAGAATCGGAAGAGGATGCAGGTCTTGCCCACTCCGGAGTCACCGAT
CAGGAGCAGTTTGAACAGATAGTCGTAGGTTTTGGCCATGTCGACTGATA
ACT

BO09261.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8287-PA 624 Rab8-RA 1..621 639..19 3105 100 Minus
CG17060-PA 615 Rab10-RA 165..209 478..434 150 93.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1195 639..19 3105 100 Minus
Rab8-RA 2263 CG8287-RA 575..1195 639..19 3105 100 Minus
Rab8-RB 1068 CG8287-RB 50..548 517..19 2495 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 248..455 1040 100 Plus
3L 28110227 3L 19868723..19868866 108..251 720 100 Plus
3L 28110227 3L 19870379..19870504 514..639 630 100 Plus
3L 28110227 3L 19868556..19868646 19..109 455 100 Plus
3L 28110227 3L 19869367..19869430 454..517 320 100 Plus
X 23542271 X 20252275..20252409 478..344 315 82.2 Minus
X 23542271 X 20251640..20251759 633..514 225 79.2 Minus
3R 32079331 3R 21114776..21114868 463..371 180 79.6 Minus
Blast to na_te.dros performed on 2015-01-31 14:52:14 has no hits.

BO09261.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:01 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-PA 1..624 16..639 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:08 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8287-PA 1..624 16..639 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:14 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 19..647 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:11 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 19..647 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:11 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868556..19868645 19..108 100 <- Plus
3L 19868724..19868864 109..249 100 <- Plus
3L 19869103..19869307 250..454 100 <- Plus
3L 19869368..19869428 455..515 100 <- Plus
3L 19870381..19870510 516..647 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:14 Download gff for BO09261.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861656..19861745 19..108 100 <- Plus
arm_3L 19861824..19861964 109..249 100 <- Plus
arm_3L 19862203..19862407 250..454 100 <- Plus
arm_3L 19862468..19862528 455..515 100 <- Plus
arm_3L 19863481..19863610 516..647 96   Plus

BO09261.5prime Sequence

653 bp (652 high quality bases) assembled on 2006-01-17

> BO09261.5prime
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAG
ACC

BO09261.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8287-PA 624 Rab8-RA 1..621 17..637 3105 100 Plus
CG17060-PA 615 Rab10-RA 165..209 178..222 150 93.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1195 17..637 3105 100 Plus
Rab8-RA 2263 CG8287-RA 575..1195 17..637 3105 100 Plus
Rab8-RB 1068 CG8287-RB 50..548 139..637 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 408..201 1040 100 Minus
3L 28110227 3L 19868723..19868866 548..405 720 100 Minus
3L 28110227 3L 19870379..19870504 142..17 630 100 Minus
3L 28110227 3L 19868556..19868646 637..547 455 100 Minus
3L 28110227 3L 19869367..19869430 202..139 320 100 Minus
X 23542271 X 20252275..20252409 178..312 315 82.2 Plus
X 23542271 X 20251640..20251759 23..142 225 79.2 Plus
3R 32079331 3R 21114776..21114868 193..285 180 79.6 Plus
Blast to na_te.dros performed on 2015-02-11 10:32:01 has no hits.

BO09261.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:02 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-PA 1..624 17..640 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:10 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8287-PA 1..624 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 01:57:56 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 9..637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:43 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 567..1195 9..637 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:43 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19868556..19868645 548..637 100 <- Minus
3L 19868724..19868864 407..547 100 <- Minus
3L 19869103..19869307 202..406 100 <- Minus
3L 19869368..19869428 141..201 100 <- Minus
3L 19870381..19870510 9..140 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 01:57:56 Download gff for BO09261.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861656..19861745 548..637 100 <- Minus
arm_3L 19861824..19861964 407..547 100 <- Minus
arm_3L 19862203..19862407 202..406 100 <- Minus
arm_3L 19862468..19862528 141..201 100 <- Minus
arm_3L 19863481..19863610 9..140 96   Minus

BO09261.complete Sequence

655 bp (655 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631453

> BO09261.complete
GAAGTTATCAGTCGACATGGCCAAAACCTACGACTATCTGTTCAAACTGC
TCCTGATCGGTGACTCCGGAGTGGGCAAGACCTGCATCCTCTTCCGATTC
TCTGAGGACGCCTTCAACACAACGTTTATATCCACAATAGGTATCGATTT
TAAAATTAGAACAATTGAATTAGATAACAAGAAGATTAAGCTGCAGATAT
GGGACACTGCCGGCCAGGAGCGTTTTCGCACAATCACCACGGCCTATTAC
AGAGGTGCCATGGGCATCATGCTGGTATATGACATAACCCAAGAAAAGTC
CTTCGAGAACATCAAAAACTGGATCAGGAATATCGAGGAAAATGCGTCCG
CCGATGTCGAGAAAATGCTGCTGGGAAACAAGTGCGAATTGACCGATAAG
CGACAGGTTTCAAAAGAGCGCGGCGAACAATTGGCCATCGAGTATGGCAT
CAAGTTCATGGAGACCTCCGCGAAGGCCAGCATTAACGTGGAAGAAGCCT
TCCTCACCCTAGCCAGTGATATCAAAGCGAAAACGGAAAAGCGAATGGAG
GCGAACAACCCACCCAAGGGCGGCCATCAGCTGAAACCGATGGACAGTCG
GACGAAGGACAGTTGGTTGTCCAGGTGCAGTCTGCTTGCAAGCTTTCTAG
ACCAT

BO09261.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:03:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 624 CG8287-PC 1..621 17..637 3105 100 Plus
Rab8-RA 624 CG8287-PA 1..621 17..637 3105 100 Plus
Rab8-RB 519 CG8287-PB 18..516 139..637 2495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-RC 2043 CG8287-RC 575..1195 17..637 3105 100 Plus
Rab8-RA 2263 CG8287-RA 575..1195 17..637 3105 100 Plus
Rab8-RB 1068 CG8287-RB 50..548 139..637 2495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19869101..19869308 408..201 1040 100 Minus
3L 28110227 3L 19868723..19868866 548..405 720 100 Minus
3L 28110227 3L 19870379..19870504 142..17 630 100 Minus
3L 28110227 3L 19868556..19868646 637..547 455 100 Minus
3L 28110227 3L 19869367..19869430 202..139 320 100 Minus
X 23542271 X 20252275..20252409 178..312 315 82.2 Plus
X 23542271 X 20251640..20251759 23..142 225 79.2 Plus
3R 32079331 3R 21114776..21114868 193..285 180 79.6 Plus
Blast to na_te.dros performed on 2014-11-28 00:03:36 has no hits.

BO09261.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:00:21 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 1..624 17..640 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:32:26 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 546..1174 9..637 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:44:41 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 575..1195 17..639 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:00:22 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 546..1174 9..637 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:13:45 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
Rab8-RA 575..1195 17..639 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:13:45 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19868552..19868645 548..639 97 <- Minus
3L 19868724..19868864 407..547 100 <- Minus
3L 19869103..19869307 202..406 100 <- Minus
3L 19869368..19869428 141..201 100 <- Minus
3L 19870381..19870504 17..140 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:44:41 Download gff for BO09261.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19861652..19861745 548..639 97 <- Minus
arm_3L 19861824..19861964 407..547 100 <- Minus
arm_3L 19862203..19862407 202..406 100 <- Minus
arm_3L 19862468..19862528 141..201 100 <- Minus
arm_3L 19863481..19863604 17..140 100   Minus

BO09261.pep Sequence

Translation from 16 to 655

> BO09261.pep
MAKTYDYLFKLLLIGDSGVGKTCILFRFSEDAFNTTFISTIGIDFKIRTI
ELDNKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITQEKSFENIK
NWIRNIEENASADVEKMLLGNKCELTDKRQVSKERGEQLAIEYGIKFMET
SAKASINVEEAFLTLASDIKAKTEKRMEANNPPKGGHQLKPMDSRTKDSW
LSRCSLLASFLDH

BO09261.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
Rab8-PC 207 CG8287-PC 1..207 1..207 1061 100 Plus
Rab8-PA 207 CG8287-PA 1..207 1..207 1061 100 Plus
Rab8-PB 172 CG8287-PB 7..172 42..207 851 100 Plus
Rab10-PA 204 CG17060-PA 4..182 3..181 706 76 Plus
Rab1-PA 205 CG3320-PA 8..173 5..170 561 62 Plus