Clone BO09262 Report

Search the DGRC for BO09262

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptJhI-26-RA
Protein status:BO09262.pep: validated full length
Sequenced Size:1351

Clone Sequence Records

BO09262.3prime Sequence

868 bp (861 high quality bases) assembled on 2006-01-18

> BO09262.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGGGCAACTTGTCAAGATCAATGCCGT
CATCAATGGACACCCCTGTCGCCTGGCTCAGCTCCAGCATTTCCTTAACC
TGGTGAGCAACCTCCCTGTCCACAACTTCTCCACCTCGATTCATGGTCCG
TTCGATGATTTCCTCGTCAGACAGTTGCAAGGCGAACATCTCCTCGGGCG
AGATGTCCAAGGGATCCACCAAACTCATGAGGAAACTGGCCGATATGGAT
AAGCTGTACGGCAGGAAACGCACGTACTCCTTCAGAAGCTCACCGCGACT
TAGGAAATCCGGAACCTCCTCCTTGGCGTGCTCCCTATAGCTATTATGAA
GCGCCAAGGTGTATTCACAGAAGATGGCCTCGAAGTTTGGATCGCGTACC
TCGGCAAAAATGGACACGGCTAGAAAGACGTTGAGATCGACCATGGGAGA
GGAGACTCGCAATGTCTGGTAGTCGAACATCATGATCTCCTGCGGCTCCT
CCTTGTCATCGTACCTGTACGCCACATTATTCCTCACATAATCGCCGTGG
CACAGGGTGGCCAGTGGCTCCCTGGGCGCCACCCGTTGCCTACCGTATTG
CGAATAGTCCGAGATCATGAAACAGAACTTCTTAACAAACTCCTCGTCGA
TCTGTGGCTGATAGGTGGCCACCGCCTTGGCCGCTCGATCGATGCTCGTT
TTCATGGTGAGCTTCCATTCCGGATGAATGTTATCGTTGGCATAGCGAGA
TTCCTTCAGATTGTCAGTCAGCTGGGCAAACTTTTCCGGGTTCTTGTGCT
TCATGGCGTACGCAAAGCCATGGAACCTTCCCAGGTAACTCACGGCAATC
ATGGCGTGCTGCAGACTC

BO09262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG3767-PA 1320 JhI-26-RA 468..1317 868..19 4250 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 520..1369 868..19 4250 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16290182..16290751 868..299 2850 100 Minus
2R 25286936 2R 16290926..16291207 300..19 1410 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:42:21 has no hits.

BO09262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:03 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 468..1320 15..868 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:11 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 468..1320 15..868 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:06 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 520..1372 15..868 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:49 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 520..1372 15..868 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:49 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16290182..16290751 299..868 100 -> Minus
2R 16290928..16291210 15..298 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:06 Download gff for BO09262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12177687..12178256 299..868 100 -> Minus
arm_2R 12178433..12178715 15..298 99   Minus

BO09262.5prime Sequence

975 bp (850 high quality bases) assembled on 2006-01-17

> BO09262.5prime
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCANGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CCTCTCCATGGTCGATCTCAACGTCTTTTCTAGCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGG

BO09262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG3767-PA 1320 JhI-26-RA 1..885 17..901 4406 99.8 Plus
CG3767-PA 1320 JhI-26-RA 918..958 934..974 205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 49..1010 13..974 4694 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16289950..16290672 252..974 3469 98.6 Plus
2R 25286936 2R 16289368..16289608 13..253 1190 99.6 Plus
Blast to na_te.dros performed on 2015-02-04 03:57:42 has no hits.

BO09262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:04 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 1..958 17..975 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:13 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3767-PA 1..958 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:21 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 41..1010 3..975 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:21 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 41..1010 3..975 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:21 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16289360..16289608 3..253 98 -> Plus
2R 16289952..16290672 254..975 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:21 Download gff for BO09262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12176865..12177113 3..253 98 -> Plus
arm_2R 12177457..12178177 254..975 99   Plus

BO09262.complete Sequence

1351 bp (1351 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631454

> BO09262.complete
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCAGGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGCCATCTTCTGTGAATACACCTTGGCG
CTTCATAATAGCTATAGGGAGCACGCCAAGGAGGAGGTTCCGGATTTCCT
AAGTCGCGGTGAGCTTCTGAAGGAGTACGTGCGTTTCCTGCCGTACAGCT
TATCCATATCGGCCAGTTTCCTCATGAGTTTGGTGGATCCCTTGGACATC
TCGCCCGAGGAGATGTTCGCCTTGCAACTGTCTGACGAGGAAATCATCGA
ACGGACCATGAATCGAGGTGGAGAAGTTGTGGACAGGGAGGTTGCTCACC
AGGTTAAGGAAATGCTGGAGCTGAGCCAGGCGACAGGGGTGTCCATTGAT
GACGGCATTGATCTTGACAAGTTGCCCAAGGAGGCAAGCTTTCTAGACCA
T

BO09262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1320 CG3767-PA 1..1317 17..1333 6585 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-RA 1495 CG3767-RA 49..1369 13..1333 6590 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16289950..16290751 252..1053 4010 100 Plus
2R 25286936 2R 16290926..16291207 1052..1333 1410 100 Plus
2R 25286936 2R 16289368..16289608 13..253 1190 99.6 Plus
Blast to na_te.dros performed on 2014-11-28 00:16:38 has no hits.

BO09262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:05 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 1..1320 17..1337 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:55 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 36..1367 3..1337 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:24 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 53..1369 17..1335 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:05 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 36..1367 3..1337 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:03 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
JhI-26-RA 53..1369 17..1335 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:03 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16289372..16289608 17..253 100 -> Plus
2R 16289952..16290751 254..1053 100 -> Plus
2R 16290928..16291207 1054..1335 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:24 Download gff for BO09262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12176877..12177113 17..253 100 -> Plus
arm_2R 12177457..12178256 254..1053 100 -> Plus
arm_2R 12178433..12178712 1054..1335 99   Plus

BO09262.pep Sequence

Translation from 16 to 1351

> BO09262.pep
MEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVGDIDIDVIGHS
EAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYESIQFGPLFTN
EINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILENFAEQGWRVT
KDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLTDNLKESRYAN
DNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFMISDYSQYGRQ
RVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQTLRVSSPMVD
LNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEEVPDFLSRGEL
LKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSDEEIIERTMNR
GGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKEASFLDH

BO09262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
JhI-26-PA 439 CG3767-PA 1..439 1..439 2292 100 Plus
CG14314-PA 438 CG14314-PA 64..408 59..404 236 24.2 Plus
CG2004-PG 425 CG2004-PG 66..362 68..357 221 26.1 Plus
CG2004-PF 425 CG2004-PF 66..362 68..357 221 26.1 Plus
CG2004-PD 425 CG2004-PD 66..362 68..357 221 26.1 Plus