Clone Sequence Records
BO09262.3prime Sequence
868 bp (861 high quality bases) assembled on 2006-01-18
> BO09262.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGGGCAACTTGTCAAGATCAATGCCGT
CATCAATGGACACCCCTGTCGCCTGGCTCAGCTCCAGCATTTCCTTAACC
TGGTGAGCAACCTCCCTGTCCACAACTTCTCCACCTCGATTCATGGTCCG
TTCGATGATTTCCTCGTCAGACAGTTGCAAGGCGAACATCTCCTCGGGCG
AGATGTCCAAGGGATCCACCAAACTCATGAGGAAACTGGCCGATATGGAT
AAGCTGTACGGCAGGAAACGCACGTACTCCTTCAGAAGCTCACCGCGACT
TAGGAAATCCGGAACCTCCTCCTTGGCGTGCTCCCTATAGCTATTATGAA
GCGCCAAGGTGTATTCACAGAAGATGGCCTCGAAGTTTGGATCGCGTACC
TCGGCAAAAATGGACACGGCTAGAAAGACGTTGAGATCGACCATGGGAGA
GGAGACTCGCAATGTCTGGTAGTCGAACATCATGATCTCCTGCGGCTCCT
CCTTGTCATCGTACCTGTACGCCACATTATTCCTCACATAATCGCCGTGG
CACAGGGTGGCCAGTGGCTCCCTGGGCGCCACCCGTTGCCTACCGTATTG
CGAATAGTCCGAGATCATGAAACAGAACTTCTTAACAAACTCCTCGTCGA
TCTGTGGCTGATAGGTGGCCACCGCCTTGGCCGCTCGATCGATGCTCGTT
TTCATGGTGAGCTTCCATTCCGGATGAATGTTATCGTTGGCATAGCGAGA
TTCCTTCAGATTGTCAGTCAGCTGGGCAAACTTTTCCGGGTTCTTGTGCT
TCATGGCGTACGCAAAGCCATGGAACCTTCCCAGGTAACTCACGGCAATC
ATGGCGTGCTGCAGACTC
BO09262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3767-PA | 1320 | JhI-26-RA | 468..1317 | 868..19 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 520..1369 | 868..19 | 4250 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16290182..16290751 | 868..299 | 2850 | 100 | Minus |
2R | 25286936 | 2R | 16290926..16291207 | 300..19 | 1410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:42:21 has no hits.
BO09262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:03 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 468..1320 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:11 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 468..1320 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:26:06 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 520..1372 | 15..868 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:02:49 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 520..1372 | 15..868 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:02:49 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16290182..16290751 | 299..868 | 100 | -> | Minus |
2R | 16290928..16291210 | 15..298 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:26:06 Download gff for
BO09262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12177687..12178256 | 299..868 | 100 | -> | Minus |
arm_2R | 12178433..12178715 | 15..298 | 99 | | Minus |
BO09262.5prime Sequence
975 bp (850 high quality bases) assembled on 2006-01-17
> BO09262.5prime
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCANGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CCTCTCCATGGTCGATCTCAACGTCTTTTCTAGCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGG
BO09262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3767-PA | 1320 | JhI-26-RA | 1..885 | 17..901 | 4406 | 99.8 | Plus |
CG3767-PA | 1320 | JhI-26-RA | 918..958 | 934..974 | 205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 49..1010 | 13..974 | 4694 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16289950..16290672 | 252..974 | 3469 | 98.6 | Plus |
2R | 25286936 | 2R | 16289368..16289608 | 13..253 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:57:42 has no hits.
BO09262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:04 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 1..958 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:13 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3767-PA | 1..958 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:58:21 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 41..1010 | 3..975 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:33:21 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 41..1010 | 3..975 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:33:21 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16289360..16289608 | 3..253 | 98 | -> | Plus |
2R | 16289952..16290672 | 254..975 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:58:21 Download gff for
BO09262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12176865..12177113 | 3..253 | 98 | -> | Plus |
arm_2R | 12177457..12178177 | 254..975 | 99 | | Plus |
BO09262.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631454
> BO09262.complete
GAAGTTATCAGTCGACATGGAGAAGATCGAGGCTGAGAGGCAATGGCTGA
GATACACGGTTCTTCCGTCAATTCTGAGGAACGGGCGCCTGGTGGACAAC
TACAGCGAGTCCAAGGTGACCACATTCCATGTGGGGGACATCGACATTGA
TGTAATTGGCCACTCGGAGGCCTTTATGCTAACTTTTTGCTACCGGACAA
CCATTAATTTTGAATACGACGGGCAAAAGTTTCAGCGAAAAATGGTGGTT
AAGAAAACACCTGCTATGCCACCAGAAATGTATGAATCCATACAGTTTGG
GCCCCTTTTTACCAACGAGATAAATTTCTATACGGAAATTCTGCCAGAGT
TTCAGAAGTTCACCGATGGCAAGTTTGCCGCACCCAAGTACTATTACGGC
GAGTTGAACCAGCATTCGGCTGTGGCCATTCTGGAGAATTTCGCGGAGCA
GGGATGGCGGGTCACCAAGGATCGTGTGGGTCTGAGTCTGCAGCACGCCA
TGATTGCCGTGAGTTACCTGGGAAGGTTCCATGGCTTTGCGTACGCCATG
AAGCACAAGAACCCGGAAAAGTTTGCCCAGCTGACTGACAATCTGAAGGA
ATCTCGCTATGCCAACGATAACATTCATCCGGAATGGAAGCTCACCATGA
AAACGAGCATCGATCGAGCGGCCAAGGCGGTGGCCACCTATCAGCCACAG
ATCGACGAGGAGTTTGTTAAGAAGTTCTGTTTCATGATCTCGGACTATTC
GCAATACGGTAGGCAACGGGTGGCGCCCAGGGAGCCACTGGCCACCCTGT
GCCACGGCGATTATGTGAGGAATAATGTGGCGTACAGGTACGATGACAAG
GAGGAGCCGCAGGAGATCATGATGTTCGACTACCAGACATTGCGAGTCTC
CTCTCCCATGGTCGATCTCAACGTCTTTCTAGCCGTGTCCATTTTTGCCG
AGGTACGCGATCCAAACTTCGAGGCCATCTTCTGTGAATACACCTTGGCG
CTTCATAATAGCTATAGGGAGCACGCCAAGGAGGAGGTTCCGGATTTCCT
AAGTCGCGGTGAGCTTCTGAAGGAGTACGTGCGTTTCCTGCCGTACAGCT
TATCCATATCGGCCAGTTTCCTCATGAGTTTGGTGGATCCCTTGGACATC
TCGCCCGAGGAGATGTTCGCCTTGCAACTGTCTGACGAGGAAATCATCGA
ACGGACCATGAATCGAGGTGGAGAAGTTGTGGACAGGGAGGTTGCTCACC
AGGTTAAGGAAATGCTGGAGCTGAGCCAGGCGACAGGGGTGTCCATTGAT
GACGGCATTGATCTTGACAAGTTGCCCAAGGAGGCAAGCTTTCTAGACCA
T
BO09262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1320 | CG3767-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-RA | 1495 | CG3767-RA | 49..1369 | 13..1333 | 6590 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16289950..16290751 | 252..1053 | 4010 | 100 | Plus |
2R | 25286936 | 2R | 16290926..16291207 | 1052..1333 | 1410 | 100 | Plus |
2R | 25286936 | 2R | 16289368..16289608 | 13..253 | 1190 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:16:38 has no hits.
BO09262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:05 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 1..1320 | 17..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:55 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 36..1367 | 3..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:24 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 53..1369 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:05 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 36..1367 | 3..1337 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:03 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
JhI-26-RA | 53..1369 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:03 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16289372..16289608 | 17..253 | 100 | -> | Plus |
2R | 16289952..16290751 | 254..1053 | 100 | -> | Plus |
2R | 16290928..16291207 | 1054..1335 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:24 Download gff for
BO09262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12176877..12177113 | 17..253 | 100 | -> | Plus |
arm_2R | 12177457..12178256 | 254..1053 | 100 | -> | Plus |
arm_2R | 12178433..12178712 | 1054..1335 | 99 | | Plus |
BO09262.pep Sequence
Translation from 16 to 1351
> BO09262.pep
MEKIEAERQWLRYTVLPSILRNGRLVDNYSESKVTTFHVGDIDIDVIGHS
EAFMLTFCYRTTINFEYDGQKFQRKMVVKKTPAMPPEMYESIQFGPLFTN
EINFYTEILPEFQKFTDGKFAAPKYYYGELNQHSAVAILENFAEQGWRVT
KDRVGLSLQHAMIAVSYLGRFHGFAYAMKHKNPEKFAQLTDNLKESRYAN
DNIHPEWKLTMKTSIDRAAKAVATYQPQIDEEFVKKFCFMISDYSQYGRQ
RVAPREPLATLCHGDYVRNNVAYRYDDKEEPQEIMMFDYQTLRVSSPMVD
LNVFLAVSIFAEVRDPNFEAIFCEYTLALHNSYREHAKEEVPDFLSRGEL
LKEYVRFLPYSLSISASFLMSLVDPLDISPEEMFALQLSDEEIIERTMNR
GGEVVDREVAHQVKEMLELSQATGVSIDDGIDLDKLPKEASFLDH
BO09262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
JhI-26-PA | 439 | CG3767-PA | 1..439 | 1..439 | 2292 | 100 | Plus |
CG14314-PA | 438 | CG14314-PA | 64..408 | 59..404 | 236 | 24.2 | Plus |
CG2004-PG | 425 | CG2004-PG | 66..362 | 68..357 | 221 | 26.1 | Plus |
CG2004-PF | 425 | CG2004-PF | 66..362 | 68..357 | 221 | 26.1 | Plus |
CG2004-PD | 425 | CG2004-PD | 66..362 | 68..357 | 221 | 26.1 | Plus |