Clone BO09264 Report

Search the DGRC for BO09264

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG11980-RB
Protein status:BO09264.pep: validated full length
Sequenced Size:1108

Clone Sequence Records

BO09264.3prime Sequence

845 bp (839 high quality bases) assembled on 2006-01-18

> BO09264.3prime
ATGGTCTAGAAAGCTTGCTTGCTCTTCTGTCCACTCGGTGGATTTCTTGG
CCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGTG
TGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCATC
GTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAGC
TGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTTG
AAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGATC
GAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCGC
CGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATCC
CGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACTC
ACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACGC
CAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATGA
GTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCATT
ATCAATTGCGTCCAGTTCGTTGATAAAATTCCTATAGATCTGAATAAAGG
CCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAGG
ATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCACT
GCTTAGCCTGACAACGTTGTAGTCCTCGCTTACATCTGGGCGAACGGAAC
TAAAAGTCTCCTTGAAGGTTATTTGGTGGTGATCGTACAATTTCT

BO09264.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 248..1074 845..19 4135 100 Minus
CG11980-PC 1080 CG11980-RC 251..1077 845..19 4135 100 Minus
CG11980-PA 1038 CG11980-RA 209..1035 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RA 1179 CG11980-RA 269..1095 845..19 4135 100 Minus
CG11980-RC 1195 CG11980-RC 285..1111 845..19 4135 100 Minus
CG11980-RB 1192 CG11980-RB 282..1108 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005247 760..19 3710 100 Minus
3R 32079331 3R 9004364..9004452 845..757 445 100 Minus
Blast to na_te.dros performed on 2015-01-31 14:51:23 has no hits.

BO09264.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:08 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 209..1038 15..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:17 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PA 209..1038 15..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:07 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 282..1111 15..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:05 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 282..1111 15..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:05 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004364..9004451 758..845 100 -> Minus
3R 9004509..9005250 15..757 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:07 Download gff for BO09264.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4830086..4830173 758..845 100 -> Minus
arm_3R 4830231..4830972 15..757 99   Minus

BO09264.5prime Sequence

882 bp (836 high quality bases) assembled on 2006-01-18

> BO09264.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCACAGCGGCAATAGTTGGCGAGTG

BO09264.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 1077 CG11980-RB 1..844 17..860 4220 100 Plus
CG11980-PC 1080 CG11980-RC 29..847 42..860 4095 100 Plus
CG11980-PA 1038 CG11980-RA 1..805 56..860 4025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1192 CG11980-RB 35..901 17..882 4310 99.9 Plus
CG11980-RC 1195 CG11980-RC 35..904 17..882 4270 99.5 Plus
CG11980-RA 1179 CG11980-RA 47..888 42..882 4185 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005040 349..882 2625 99.8 Plus
3R 32079331 3R 9004142..9004452 42..352 1555 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:37:36 has no hits.

BO09264.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:09 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PB 1..867 17..882 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:18 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-PB 1..867 17..882 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:27 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..901 8..882 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:31 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 29..901 8..882 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:31 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9004142..9004451 42..351 100 -> Plus
3R 9004509..9005040 352..882 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:27 Download gff for BO09264.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829864..4830173 42..351 100 -> Plus
arm_3R 4830231..4830762 352..882 99   Plus

BO09264.complete Sequence

1108 bp (1108 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631455

> BO09264.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGAC
GCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCGGAC
TGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAATTC
ATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGCCAT
GTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAAGCAAGCTTTC
TAGACCAT

BO09264.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1077 CG11980-PB 1..1074 17..1090 5370 100 Plus
CG11980-RC 1080 CG11980-PC 1..1077 17..1090 5305 99.7 Plus
CG11980-RA 1038 CG11980-PA 1..1035 56..1090 5175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RB 1192 CG11980-RB 35..1108 17..1090 5370 100 Plus
CG11980-RC 1195 CG11980-RC 35..1111 17..1090 5305 99.7 Plus
CG11980-RA 1179 CG11980-RA 47..1095 42..1090 5245 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005247 349..1090 3710 100 Plus
3R 32079331 3R 9004142..9004452 42..352 1555 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:03:49 has no hits.

BO09264.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:06 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 1..1077 17..1094 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:57 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1110 8..1094 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:26 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 40..1108 22..1092 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:06 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 28..1110 8..1094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:07 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RB 40..1108 22..1092 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:07 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004056..9004075 22..41 100 -> Plus
3R 9004142..9004451 42..351 100 -> Plus
3R 9004509..9005247 352..1092 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:26 Download gff for BO09264.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829778..4829797 22..41 100 -> Plus
arm_3R 4829864..4830173 42..351 100 -> Plus
arm_3R 4830231..4830969 352..1092 99   Plus

BO09264.pep Sequence

Translation from 16 to 1108

> BO09264.pep
MFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDE
YKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSV
RPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFI
QIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVD
IEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEI
LVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYL
GRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKK
STEWTEEQASFLDH

BO09264.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PB 358 CG11980-PB 1..358 1..358 1903 100 Plus
CG11980-PC 359 CG11980-PC 1..359 1..358 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 14..358 1839 100 Plus