Clone Sequence Records
BO09264.3prime Sequence
845 bp (839 high quality bases) assembled on 2006-01-18
> BO09264.3prime
ATGGTCTAGAAAGCTTGCTTGCTCTTCTGTCCACTCGGTGGATTTCTTGG
CCAACAACATGGCAGCCTCCTCGGTTTTTGCCCCGCCAATAAATCCTGTG
TGATGGATGAATTCGAGATCTTTGATGCTCGCCTTATCGCATAGTTCATC
GTCCATCAGTCCGCGCCAAGGAGTGGGCAGAAATTTGCGGCCCAGATAGC
TGCCAGGCGTCACTGGAACTCCGGCCACTCGCCAACTATTGCCGCTGTTG
AAGACGACCAGCTTGGGCACACCCTCCACCTTGTACTCCTTTTCAAGATC
GAACAGATGAGACTTCCAGGGGCAGAAATTCTTCAACACAAGAATCTCGC
CGGTGGGATGGACGTTCTTGGCATTTTTAAGAGCCTCTCGTACGTGATCC
CGGGCTGGAATCCAGGAACATGATACCTCCACAACGTTGTCCACAAACTC
ACGACCTGCAGTATCCATCGCCTGTCTGAATCGGTCTTCGATGTCTACGC
CAGTTTCCTGCCAGGACGGATTCAGTTTGGCAATGCGGGCAGATAGATGA
GTGGAGATTTTGTATATAGGCTCAACGCCCTCGAACATGGGCACTCCATT
ATCAATTGCGTCCAGTTCGTTGATAAAATTCCTATAGATCTGAATAAAGG
CCGTTTGCAGGTTTTCCGGTGAGAGTTTAATTCCCTTTTCGCGCTGCAGG
ATGCTCTGTATAACACGCTCGCCATAGTGACAGTAGACCAGTCCAGCACT
GCTTAGCCTGACAACGTTGTAGTCCTCGCTTACATCTGGGCGAACGGAAC
TAAAAGTCTCCTTGAAGGTTATTTGGTGGTGATCGTACAATTTCT
BO09264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 248..1074 | 845..19 | 4135 | 100 | Minus |
CG11980-PC | 1080 | CG11980-RC | 251..1077 | 845..19 | 4135 | 100 | Minus |
CG11980-PA | 1038 | CG11980-RA | 209..1035 | 845..19 | 4135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 14:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RA | 1179 | CG11980-RA | 269..1095 | 845..19 | 4135 | 100 | Minus |
CG11980-RC | 1195 | CG11980-RC | 285..1111 | 845..19 | 4135 | 100 | Minus |
CG11980-RB | 1192 | CG11980-RB | 282..1108 | 845..19 | 4135 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 14:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005247 | 760..19 | 3710 | 100 | Minus |
3R | 32079331 | 3R | 9004364..9004452 | 845..757 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 14:51:23 has no hits.
BO09264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:08 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 209..1038 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:17 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PA | 209..1038 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:10:07 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 282..1111 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:32:05 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 282..1111 | 15..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:32:05 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004364..9004451 | 758..845 | 100 | -> | Minus |
3R | 9004509..9005250 | 15..757 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:10:07 Download gff for
BO09264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4830086..4830173 | 758..845 | 100 | -> | Minus |
arm_3R | 4830231..4830972 | 15..757 | 99 | | Minus |
BO09264.5prime Sequence
882 bp (836 high quality bases) assembled on 2006-01-18
> BO09264.5prime
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCACAGCGGCAATAGTTGGCGAGTG
BO09264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 1077 | CG11980-RB | 1..844 | 17..860 | 4220 | 100 | Plus |
CG11980-PC | 1080 | CG11980-RC | 29..847 | 42..860 | 4095 | 100 | Plus |
CG11980-PA | 1038 | CG11980-RA | 1..805 | 56..860 | 4025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1192 | CG11980-RB | 35..901 | 17..882 | 4310 | 99.9 | Plus |
CG11980-RC | 1195 | CG11980-RC | 35..904 | 17..882 | 4270 | 99.5 | Plus |
CG11980-RA | 1179 | CG11980-RA | 47..888 | 42..882 | 4185 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:37:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005040 | 349..882 | 2625 | 99.8 | Plus |
3R | 32079331 | 3R | 9004142..9004452 | 42..352 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:37:36 has no hits.
BO09264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:09 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PB | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:18 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-PB | 1..867 | 17..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:25:27 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 29..901 | 8..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:31 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 29..901 | 8..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:31 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004142..9004451 | 42..351 | 100 | -> | Plus |
3R | 9004509..9005040 | 352..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:25:27 Download gff for
BO09264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829864..4830173 | 42..351 | 100 | -> | Plus |
arm_3R | 4830231..4830762 | 352..882 | 99 | | Plus |
BO09264.complete Sequence
1108 bp (1108 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631455
> BO09264.complete
GAAGTTATCAGTCGACATGTTCCGATTGTTACCTCGTTTTCGAAAACTAT
CTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGGATCGGC
ACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTTTATGCT
CAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTCGGGACA
ACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGCGGCGTT
TATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTTCAAGGA
GACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACGTTGTCA
GGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGTGTTATA
CAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGAAAACCT
GCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAACTGGACG
CAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATATACAAA
ATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTCCTGGCA
GGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGGATACTG
CAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCCTGGATT
CCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAACGTCCA
TCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGAAGTCTC
ATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCCAAGCTG
GTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCCAGTGAC
GCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGCGCGGAC
TGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTCGAATTC
ATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGCTGCCAT
GTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAAGCAAGCTTTC
TAGACCAT
BO09264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1077 | CG11980-PB | 1..1074 | 17..1090 | 5370 | 100 | Plus |
CG11980-RC | 1080 | CG11980-PC | 1..1077 | 17..1090 | 5305 | 99.7 | Plus |
CG11980-RA | 1038 | CG11980-PA | 1..1035 | 56..1090 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-RB | 1192 | CG11980-RB | 35..1108 | 17..1090 | 5370 | 100 | Plus |
CG11980-RC | 1195 | CG11980-RC | 35..1111 | 17..1090 | 5305 | 99.7 | Plus |
CG11980-RA | 1179 | CG11980-RA | 47..1095 | 42..1090 | 5245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:03:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9004506..9005247 | 349..1090 | 3710 | 100 | Plus |
3R | 32079331 | 3R | 9004142..9004452 | 42..352 | 1555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:03:49 has no hits.
BO09264.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:06 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 1..1077 | 17..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:26:57 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 28..1110 | 8..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:45:26 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 40..1108 | 22..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:06 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 28..1110 | 8..1094 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:50:07 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11980-RB | 40..1108 | 22..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:50:07 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9004056..9004075 | 22..41 | 100 | -> | Plus |
3R | 9004142..9004451 | 42..351 | 100 | -> | Plus |
3R | 9004509..9005247 | 352..1092 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:45:26 Download gff for
BO09264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4829778..4829797 | 22..41 | 100 | -> | Plus |
arm_3R | 4829864..4830173 | 42..351 | 100 | -> | Plus |
arm_3R | 4830231..4830969 | 352..1092 | 99 | | Plus |
BO09264.pep Sequence
Translation from 16 to 1108
> BO09264.pep
MFRLLPRFRKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLDE
YKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSSV
RPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAFI
QIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGVD
IEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGEI
LVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSYL
GRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAKK
STEWTEEQASFLDH
BO09264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11980-PB | 358 | CG11980-PB | 1..358 | 1..358 | 1903 | 100 | Plus |
CG11980-PC | 359 | CG11980-PC | 1..359 | 1..358 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 14..358 | 1839 | 100 | Plus |