Clone Sequence Records
BO09268.3prime Sequence
889 bp (758 high quality bases) assembled on 2006-01-18
> BO09268.3prime
ATGGTCTAGAAAGCTTGCAACGGAACGAGGCTGGACGAAGTGTGGTCGCT
GGGACTCTTCGGGGGCAGCAGCTCCTCCCTCCATGGCCTGCATCATGGGC
ACCGGGATGCGGACGGGCTGAGCGAGACTGCGTCCGTAGACCATGCGGCC
GAAGGGCAGCTGCTGCGGCTGGTCGGGCATCGGCGGGGTCATGGTGTCAC
GGGGCTGCTCAGGCAGGGGCTGCAGGATCAAACGCTGAATGCGCATCTGG
GGCACCTGCTGCTGCTGCTGCTCCTGTCGCTCCTGGCTGACTTCCTGGTG
CTGTTCCTCTGGATGCTGTTGCTCAGGCTGGACGGTCTGTTGCTGCTGCT
GCTGGGGCACCGTGGTCTGTGCCTCGGTGGTGGCCTGCTCGGCGGAGCTG
GAGACATCTTCGTCGCTGCCCTCACTGGATTCCGCACCCTCCTCGGCGGC
CAGACGACGCAGCTCGTCGGTGATGCGATCCTCGGCCATGCGCTGGATGT
TCCTCAGATCCTCGGCGGTGATGCCAACGCGCTGCAGGGCCATTCCGAAG
GGCATGGGCTGGATCTGAATCTGGGGGATCTCACGCTGCTCCTGGCGCTG
CTGCATCTCATGACGCTGCTGCATCTCCTGGCGCTGCTGCATCTCATGGC
GCTGCTGCATCTCCTGGCGCTGTTGCATCTCCTGACGTTGCTGCATCTCC
AGACGTTGCTGCTGGGCGGGGATCTGGACGGGCACATCGTCGGCCACATG
GATCTCACGGAAGGGGATCTGCTGCATGTGAATGCGCACGGTCTGGACCT
TGGGCATCTGCATTTCCTCGGAGGACTCCATGCGAGGCGCCTGCATCACC
TGTGGCGGCATGGGAGGACGCATGGGCAGGTGCTGGAAC
BO09268.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10596-PA | 1854 | Msr-110-RA | 981..1851 | 889..19 | 4355 | 100 | Minus |
| CG10596-PB | 1827 | Msr-110-RB | 954..1824 | 889..19 | 4355 | 100 | Minus |
| CG10596-PC | 1878 | Msr-110-RC | 1005..1875 | 889..19 | 4355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RD | 2686 | CG10596-RD | 1151..2021 | 889..19 | 4355 | 100 | Minus |
| Msr-110-RC | 2600 | CG10596-RC | 1065..1935 | 889..19 | 4355 | 100 | Minus |
| Msr-110-RB | 2695 | CG10596-RB | 1160..2030 | 889..19 | 4355 | 100 | Minus |
| Msr-110-RD | 2686 | CG10596-RD | 1376..1451 | 700..625 | 305 | 93.4 | Minus |
| Msr-110-RC | 2600 | CG10596-RC | 1290..1365 | 700..625 | 305 | 93.4 | Minus |
| Msr-110-RD | 2686 | CG10596-RD | 1382..1451 | 712..643 | 200 | 85.7 | Minus |
| Msr-110-RC | 2600 | CG10596-RC | 1296..1365 | 712..643 | 200 | 85.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5567732..5568582 | 39..889 | 4255 | 100 | Plus |
| 3L | 28110227 | 3L | 5568282..5568357 | 625..700 | 305 | 93.4 | Plus |
| 3L | 28110227 | 3L | 5568282..5568351 | 643..712 | 200 | 85.7 | Plus |
Blast to na_te.dros performed 2015-02-03 08:56:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6854 | 715..585 | 267 | 67.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6924 | 370..158 | 262 | 60.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6856 | 358..247 | 237 | 70.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6996 | 358..161 | 226 | 59.3 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6878 | 358..243 | 214 | 69 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2914 | 714..590 | 213 | 64.8 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2508 | 358..156 | 193 | 59 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 354..257 | 192 | 69.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2449 | 431..248 | 184 | 60.9 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6957 | 354..251 | 166 | 65.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2880 | 714..243 | 157 | 52.7 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6924 | 358..254 | 157 | 66.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2511 | 358..252 | 146 | 61.8 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1163 | 384..270 | 133 | 62.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2549 | 354..266 | 129 | 65.6 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1587 | 354..300 | 113 | 67.3 | Minus |
BO09268.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:14 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10596-PA | 981..1854 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:25 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10596-PC | 1005..1878 | 15..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:56 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RA | 1187..2061 | 14..889 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:11 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 1160..2034 | 14..889 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:11 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5567580..5567603 | 14..38 | 92 | <- | Plus |
| 3L | 5567732..5568582 | 39..889 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:56 Download gff for
BO09268.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5560680..5560703 | 14..38 | 92 | <- | Plus |
| arm_3L | 5560832..5561682 | 39..889 | 100 | | Plus |
BO09268.5prime Sequence
878 bp (794 high quality bases) assembled on 2006-01-17
> BO09268.5prime
GAAGTTATCAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCG
TGCAAATGAAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGC
GAACCGCCACCGGCCTACAAGCGCCAGGCGAATTCGGTGAAAATCGCCAA
GATCACCGCCTTCACCATCATCGTGTCAGCCTTCATCCTGGGATCCTTCA
TCCTGGCCTCCTCCTACCTGCAGGCCAAGGCCTCGTGCGATCAGGTCCAG
GCCCTCGACTCGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCA
GGTGGGCAAGGAACTTCCCCGTGCTGAACCCCTGCTGGGAGGAGCTGCTG
GAGCTGCCGATGACTCCGAACTGCAGAGCTTGGAGCCGGAAAGTCGTAAG
ACTGAAGCCACCCAGGATGCCGAGGAGCACCCCGACAAGGACAACTCCTA
CTCCGACAGCGATGAGACCGATGAGCTGCAGAAGTTCCCCGGCAAGATGC
CACTCGAGCTGGACTTGAGTGACCTGGCTGCCGCCATTCTGCGCAACAAC
AAGAAATCCCGCATGAACTGTGTGGTGGAGCGCAAGCACGCCGAGGAGAT
TGTCGACTCGCCCTCGAAGACGGTAGCCCTGCCCTTCGGAGTCAACCTGA
CCACGGATCCCAAGAAGGCACGCATCACCGGCGAGCGGATCTCGATCTTC
TGCGACGGCGGCGACGACAAGGATAAGGAGGAGAAGGAGGCCAAGCGCCA
GCGGGAGCAGGAGGAGGAGGACTCCGATGAGGATGCCGAGCCGCTGAGGC
CCATGTTCATTCCCTTCCAGCGAGTGCCCATTCCCTTCGGACGCATTCCC
GACCAGATGCCGCTGACCCATATGCCCC
BO09268.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10596-PB | 1827 | Msr-110-RB | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG10596-PA | 1854 | Msr-110-RA | 123..889 | 112..878 | 3835 | 100 | Plus |
| CG10596-PC | 1878 | Msr-110-RC | 147..913 | 112..878 | 3835 | 100 | Plus |
| CG10596-PA | 1854 | Msr-110-RA | 1..96 | 17..112 | 480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RB | 2695 | CG10596-RB | 207..1068 | 17..878 | 4310 | 100 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 207..1059 | 17..878 | 4165 | 99 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 207..973 | 112..878 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5568674..5568996 | 878..556 | 1615 | 100 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 555..309 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573830 | 311..112 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 5576837..5576933 | 113..17 | 485 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:28:13 has no hits.
BO09268.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:15 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10596-PB | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:27 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10596-PB | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:24:45 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..1068 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:48:31 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..1068 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:48:31 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5568674..5568996 | 556..878 | 100 | <- | Minus |
| 3L | 5569117..5569361 | 311..555 | 100 | <- | Minus |
| 3L | 5573632..5573829 | 113..310 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:24:45 Download gff for
BO09268.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5561774..5562096 | 556..878 | 100 | <- | Minus |
| arm_3L | 5562217..5562461 | 311..555 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 113..310 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 17..112 | 100 | | Minus |
BO09268.complete Sequence
1858 bp (1858 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631457
> BO09268.complete
GAAGTTATCAGTCGACATGACCGAGAAGGATACCGTCTCGATGGCTACCG
TGCAAATGAAGCCCGACTATGCGGCTAGCGAGGTCTACAGCACCGCCAGC
GAACCGCCACCGGCCTACAAGCGCCAGGCGAATTCGGTGAAAATCGCCAA
GATCACCGCCTTCACCATCATCGTGTCAGCCTTCATCCTGGGATCCTTCA
TCCTGGCCTCCTCCTACCTGCAGGCCAAGGCCTCGTGCGATCAGGTCCAG
GCCCTCGACTCGGTGCTGGAAAAGGAGCTAATGCTTGAGACTTTGCAGCA
GGTGGGCAAGGAACTTCCCCGTGCTGAACCCCTGCTGGGAGGAGCTGCTG
GAGCTGCCGATGACTCCGAACTGCAGAGCTTGGAGCCGGAAAGTCGTAAG
ACTGAAGCCACCCAGGATGCCGAGGAGCACCCCGACAAGGACAACTCCTA
CTCCGACAGCGATGAGACCGATGAGCTGCAGAAGTTCCCCGGCAAGATGC
CACTCGAGCTGGACTTGAGTGACCTGGCTGCCGCCATTCTGCGCAACAAC
AAGAAATCCCGCATGAACTGTGTGGTGGAGCGCAAGCACGCCGAGGAGAT
TGTCGACTCGCCCTCGAAGACGGTAGCCCTGCCCTTCGGAGTCAACCTGA
CCACGGATCCCAAGAAGGCACGCATCACCGGCGAGCGGATCTCGATCTTC
TGCGACGGCGGCGACGACAAGGATAAGGAGGAGAAGGAGGCCAAGCGCCA
GCGGGAGCAGGAGGAGGAGGACTCCGATGAGGATGCCGAGCCGCTGAGGC
CCATGTTCATTCCCTTCCAGCGAGTGCCCATTCCCTTCGGACGCATTCCC
GACCAGATGCCGCTGACCCATATGCCCCAGAGGATGATGCCACCAGCCAT
GCAGATGCAACAGCAATTGCCCCAGCAGCAACAGCAGGGACCCATCATCA
TCCGCCAGCTGCCACCTCCGTTCCAGCACCTGCCCATGCGTCCTCCCATG
CCGCCACAGGTGATGCAGGCGCCTCGCATGGAGTCCTCCGAGGAAATGCA
GATGCCCAAGGTCCAGACCGTGCGCATTCACATGCAGCAGATCCCCTTCC
GTGAGATCCATGTGGCCGACGATGTGCCCGTCCAGATCCCCGCCCAGCAG
CAACGTCTGGAGATGCAGCAACGTCAGGAGATGCAACAGCGCCAGGAGAT
GCAGCAGCGCCATGAGATGCAGCAGCGCCAGGAGATGCAGCAGCGTCATG
AGATGCAGCAGCGCCAGGAGCAGCGTGAGATCCCCCAGATTCAGATCCAG
CCCATGCCCTTCGGAATGGCCCTGCAGCGCGTTGGCATCACCGCCGAGGA
TCTGAGGAACATCCAGCGCATGGCCGAGGATCGCATCACCGACGAGCTGC
GTCGTCTGGCCGCCGAGGAGGGTGCGGAATCCAGTGAGGGCAGCGACGAA
GATGTCTCCAGCTCCGCCGAGCAGGCCACCACCGAGGCACAGACCACGGT
GCCCCAGCAGCAGCAGCAACAGACCGTCCAGCCTGAGCAACAGCATCCAG
AGGAACAGCACCAGGAAGTCAGCCAGGAGCGACAGGAGCAGCAGCAGCAG
CAGGTGCCCCAGATGCGCATTCAGCGTTTGATCCTGCAGCCCCTGCCTGA
GCAGCCCCGTGACACCATGACCCCGCCGATGCCCGACCAGCCGCAGCAGC
TGCCCTTCGGCCGCATGGTCTACGGACGCAGTCTCGCTCAGCCCGTCCGC
ATCCCGGTGCCCATGATGCAGGCCATGGAGGGAGGAGCTGCTGCCCCCGA
AGAGTCCCAGCGACCACACTTCGTCCAGCCTCGTTCCGTTGCAAGCTTTC
TAGACCAT
BO09268.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RB | 1827 | CG10596-PB | 1..1824 | 17..1840 | 9120 | 100 | Plus |
| Msr-110-RD | 1818 | CG10596-PD | 1..1815 | 17..1840 | 8950 | 99.5 | Plus |
| Msr-110-RC | 1878 | CG10596-PC | 147..1875 | 112..1840 | 8645 | 100 | Plus |
| Msr-110-RB | 1827 | CG10596-PB | 1179..1254 | 1159..1234 | 305 | 93.4 | Plus |
| Msr-110-RD | 1818 | CG10596-PD | 1170..1245 | 1159..1234 | 305 | 93.4 | Plus |
| Msr-110-RB | 1827 | CG10596-PB | 1185..1254 | 1147..1216 | 200 | 85.7 | Plus |
| Msr-110-RD | 1818 | CG10596-PD | 1176..1245 | 1147..1216 | 200 | 85.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-RB | 2695 | CG10596-RB | 207..2030 | 17..1840 | 9120 | 100 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 207..2021 | 17..1840 | 8950 | 99.5 | Plus |
| Msr-110-RC | 2600 | CG10596-RC | 207..1935 | 112..1840 | 8645 | 100 | Plus |
| Msr-110-RB | 2695 | CG10596-RB | 1385..1460 | 1159..1234 | 305 | 93.4 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 1376..1451 | 1159..1234 | 305 | 93.4 | Plus |
| Msr-110-RB | 2695 | CG10596-RB | 1391..1460 | 1147..1216 | 200 | 85.7 | Plus |
| Msr-110-RD | 2686 | CG10596-RD | 1382..1451 | 1147..1216 | 200 | 85.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5567732..5568996 | 1820..556 | 6325 | 100 | Minus |
| 3L | 28110227 | 3L | 5569117..5569363 | 555..309 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 5573631..5573830 | 311..112 | 1000 | 100 | Minus |
| 3L | 28110227 | 3L | 5576837..5576933 | 113..17 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 5568282..5568357 | 1234..1159 | 305 | 93.4 | Minus |
| 3L | 28110227 | 3L | 5568282..5568351 | 1216..1147 | 200 | 85.7 | Minus |
Blast to na_te.dros performed 2014-11-27 13:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6854 | 1144..1274 | 267 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6924 | 1489..1701 | 262 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6856 | 1501..1612 | 237 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6802..6996 | 1501..1698 | 226 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6878 | 1501..1616 | 214 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2914 | 1145..1269 | 213 | 64.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2315..2508 | 1501..1703 | 193 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6858 | 1505..1602 | 192 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2280..2449 | 1428..1611 | 184 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2844..2970 | 1145..1274 | 183 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6845..6957 | 1505..1608 | 166 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2880 | 1145..1616 | 157 | 52.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6924 | 1501..1605 | 157 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2402..2511 | 1501..1607 | 146 | 61.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6857 | 901..980 | 138 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6821 | 901..965 | 135 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1163 | 1475..1589 | 133 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2549 | 1505..1593 | 129 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6818 | 901..983 | 126 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6800..6893 | 891..980 | 126 | 63.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1058..1151 | 888..980 | 124 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2415 | 891..983 | 119 | 63.5 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3283..3347 | 900..964 | 117 | 68.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1141 | 892..937 | 115 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1533..1587 | 1505..1559 | 113 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6878..6922 | 891..937 | 113 | 74.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1093..1129 | 901..937 | 113 | 78.4 | Plus |
BO09268.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:59:15 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 1..1827 | 17..1844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:17:13 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..2034 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:13 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..2030 | 17..1842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:59:15 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..2034 | 17..1845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:46 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Msr-110-RB | 207..2030 | 17..1842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:46 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5567732..5568996 | 556..1820 | 100 | <- | Minus |
| 3L | 5569117..5569361 | 311..555 | 100 | <- | Minus |
| 3L | 5573632..5573829 | 113..310 | 100 | <- | Minus |
| 3L | 5576838..5576933 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:13 Download gff for
BO09268.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5560832..5562096 | 556..1820 | 100 | <- | Minus |
| arm_3L | 5562217..5562461 | 311..555 | 100 | <- | Minus |
| arm_3L | 5566732..5566929 | 113..310 | 100 | <- | Minus |
| arm_3L | 5569938..5570033 | 17..112 | 100 | | Minus |
BO09268.pep Sequence
Translation from 16 to 1858
> BO09268.pep
MTEKDTVSMATVQMKPDYAASEVYSTASEPPPAYKRQANSVKIAKITAFT
IIVSAFILGSFILASSYLQAKASCDQVQALDSVLEKELMLETLQQVGKEL
PRAEPLLGGAAGAADDSELQSLEPESRKTEATQDAEEHPDKDNSYSDSDE
TDELQKFPGKMPLELDLSDLAAAILRNNKKSRMNCVVERKHAEEIVDSPS
KTVALPFGVNLTTDPKKARITGERISIFCDGGDDKDKEEKEAKRQREQEE
EDSDEDAEPLRPMFIPFQRVPIPFGRIPDQMPLTHMPQRMMPPAMQMQQQ
LPQQQQQGPIIIRQLPPPFQHLPMRPPMPPQVMQAPRMESSEEMQMPKVQ
TVRIHMQQIPFREIHVADDVPVQIPAQQQRLEMQQRQEMQQRQEMQQRHE
MQQRQEMQQRHEMQQRQEQREIPQIQIQPMPFGMALQRVGITAEDLRNIQ
RMAEDRITDELRRLAAEEGAESSEGSDEDVSSSAEQATTEAQTTVPQQQQ
QQTVQPEQQHPEEQHQEVSQERQEQQQQQVPQMRIQRLILQPLPEQPRDT
MTPPMPDQPQQLPFGRMVYGRSLAQPVRIPVPMMQAMEGGAAAPEESQRP
HFVQPRSVASFLDH
BO09268.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:00:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Msr-110-PB | 608 | CG10596-PB | 1..608 | 1..608 | 3111 | 100 | Plus |
| Msr-110-PA | 617 | CG10596-PA | 1..617 | 1..608 | 3091 | 98.5 | Plus |
| Msr-110-PD | 605 | CG10596-PD | 1..605 | 1..608 | 3082 | 99.5 | Plus |
| Msr-110-PC | 625 | CG10596-PC | 50..625 | 33..608 | 2948 | 100 | Plus |
| CG44085-PH | 756 | CG44085-PH | 273..616 | 248..608 | 245 | 25 | Plus |
