Clone Sequence Records
BO09269.3prime Sequence
881 bp (837 high quality bases) assembled on 2006-01-18
> BO09269.3prime
ATGGTCTAGAAAGCTTGCATTAAGGGCTGCCACAGCCTTGTGGGCGGCAT
CATCCAAGTCACTGGCTGTCTGAATGGGCAGGCCCGAATTCTTCAGGATC
TCGCGAGCCTGATTTACATTGGTGCCCTCCAGTCGCACAACCAGTGGAAC
ATTCAGTTGCAGCTTTTTGGATGCAGCCACAATGCCATTGGCAATGGTGG
CACAATTGACAATGCCGCCAAAGACATTGACCAGGATTCCCTTGACTTTC
GGGTCAGCAGTGAGGATCTCGAAGGCTTTGGCCACCTGATCCTCCCTGAC
GCCACCGCCGACGTCCAAAAAGTTGGCGGGCTCGCCTCCATTCAGCTTGA
TGATGTCCATGGTGGCCATGGCCAGGCCGGCACCATTAACCAAGCAGCCA
ATGTTGCCATCCATGGCGACGTAGTTCAGATTGTACTTGGCCGCCTCCAC
TTCTCGGGGATCGGATTCCTCCTCGGTGACGTCCATGGAGAAAATATCCT
TCTGACGGAACTGGGCATTGTCGTCAAAGTTGAGCTTAGCATCAACGGAG
ATAACTTCTCCCTTATCCGTCTCCGCCAGCGGGTTGATCTCGATCTGTAC
GGCATCCACAGCTTTGAAGAGAGTATAGAGTTTTTGAATTTCCTCAGCAC
AACGCTTTACAGAGTCTCCCTTGAACTCCAAGAACTTGGCCACCTCCAAG
AGCGTCGACTCCGGTATGGGCTTGCCAATGTCTAGCGGAACAGTCTTAAT
TTTCTCAGGGGTTTCCTCGGCCACCGCCTCGATATCCATGCCACCGGCAG
GTGAGGCAATCAGCACGGGTCCATTGTGCTCGCGGTCCAGCAAGATGCAG
AGATAGGTCTCGCGGGTGATGTTGATACTGC
BO09269.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10622-PA | 1251 | Sucb-RA | 386..1248 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 534..1396 | 881..19 | 4315 | 100 | Minus |
Sucb-RA | 1600 | CG10622-RA | 534..1396 | 881..19 | 4315 | 100 | Minus |
skap-RH | 1914 | CG11963-RH | 931..1082 | 453..302 | 355 | 82.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5561905..5562767 | 19..881 | 4315 | 100 | Plus |
3R | 32079331 | 3R | 8941506..8941657 | 453..302 | 355 | 82.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 08:56:10 has no hits.
BO09269.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:16 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-PA | 386..1251 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:28 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10622-PA | 386..1251 | 18..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:52 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 534..1396 | 19..881 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:07 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 534..1396 | 19..881 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:07 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5561905..5562767 | 19..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:52 Download gff for
BO09269.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555005..5555867 | 19..881 | 100 | | Plus |
BO09269.5prime Sequence
899 bp (780 high quality bases) assembled on 2006-01-17
> BO09269.5prime
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATG
BO09269.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10622-PA | 1251 | Sucb-RA | 1..883 | 17..899 | 4415 | 100 | Plus |
CG10622-PB | 339 | Sucb-RB | 1..281 | 17..297 | 1405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 139..1031 | 7..899 | 4420 | 99.7 | Plus |
Sucb-RA | 1600 | CG10622-RA | 139..1031 | 7..899 | 4420 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5562270..5562875 | 899..294 | 3015 | 99.8 | Minus |
3L | 28110227 | 3L | 5563266..5563397 | 197..66 | 660 | 100 | Minus |
3L | 28110227 | 3L | 5563085..5563185 | 297..197 | 505 | 100 | Minus |
3L | 28110227 | 3L | 5563490..5563553 | 70..7 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:08:42 has no hits.
BO09269.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:17 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:29 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10622-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:32 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 137..1031 | 3..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:29 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 137..1031 | 3..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:29 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5562270..5562871 | 298..899 | 100 | <- | Minus |
3L | 5563085..5563184 | 198..297 | 100 | <- | Minus |
3L | 5563266..5563395 | 68..197 | 100 | <- | Minus |
3L | 5563493..5563555 | 3..67 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:32 Download gff for
BO09269.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555370..5555971 | 298..899 | 100 | <- | Minus |
arm_3L | 5556185..5556284 | 198..297 | 100 | <- | Minus |
arm_3L | 5556366..5556495 | 68..197 | 100 | <- | Minus |
arm_3L | 5556593..5556655 | 3..67 | 92 | | Minus |
BO09269.complete Sequence
1282 bp (1282 high quality bases) assembled on 2006-01-25
GenBank Submission: FJ631458
> BO09269.complete
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATGG
TGCCGGCCTGGCCATGGCCACCATGGACATCATCAAGCTGAATGGAGGCG
AGCCCGCCAACTTTTTGGACGTCGGCGGTGGCGTCAGGGAGGATCAGGTG
GCCAAAGCCTTCGAGATCCTCACTGCTGACCCGAAAGTCAAGGGAATCCT
GGTCAATGTCTTTGGCGGCATTGTCAATTGTGCCACCATTGCCAATGGCA
TTGTGGCTGCATCCAAAAAGCTGCAACTGAATGTTCCACTGGTTGTGCGA
CTGGAGGGCACCAATGTAAATCAGGCTCGCGAGATCCTGAAGAATTCGGG
CCTGCCCATTCAGACAGCCAGTGACTTGGATGATGCCGCCCACAAGGCTG
TGGCAGCCCTTAATGCAAGCTTTCTAGACCAT
BO09269.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1251 | CG10622-PC | 1..1248 | 17..1264 | 6240 | 100 | Plus |
Sucb-RA | 1251 | CG10622-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
skap-RH | 1356 | CG11963-PH | 856..1007 | 830..981 | 355 | 82.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-RC | 1518 | CG10622-RC | 139..1396 | 7..1264 | 6245 | 99.8 | Plus |
Sucb-RA | 1600 | CG10622-RA | 139..1396 | 7..1264 | 6245 | 99.8 | Plus |
skap-RH | 1914 | CG11963-RH | 931..1082 | 830..981 | 355 | 82.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5561905..5562875 | 1264..294 | 4840 | 99.9 | Minus |
3L | 28110227 | 3L | 5563266..5563397 | 197..66 | 660 | 100 | Minus |
3L | 28110227 | 3L | 5563085..5563185 | 297..197 | 505 | 100 | Minus |
3R | 32079331 | 3R | 8941506..8941657 | 830..981 | 355 | 82.2 | Plus |
3L | 28110227 | 3L | 5563490..5563553 | 70..7 | 275 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:04:24 has no hits.
BO09269.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:09 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 1..1251 | 17..1265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:01 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 130..1389 | 3..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:41 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 149..1396 | 17..1266 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:09 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 130..1389 | 3..1264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:44 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sucb-RA | 149..1396 | 17..1266 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:44 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5563493..5563543 | 17..67 | 100 | | Minus |
3L | 5561903..5562871 | 298..1266 | 99 | <- | Minus |
3L | 5563085..5563184 | 198..297 | 100 | <- | Minus |
3L | 5563266..5563395 | 68..197 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:41 Download gff for
BO09269.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5555003..5555971 | 298..1266 | 99 | <- | Minus |
arm_3L | 5556185..5556284 | 198..297 | 100 | <- | Minus |
arm_3L | 5556366..5556495 | 68..197 | 100 | <- | Minus |
arm_3L | 5556593..5556643 | 17..67 | 100 | | Minus |
BO09269.pep Sequence
Translation from 16 to 1282
> BO09269.pep
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALNASFLDH
BO09269.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sucb-PC | 416 | CG10622-PC | 1..416 | 1..416 | 2086 | 100 | Plus |
Sucb-PA | 416 | CG10622-PA | 1..416 | 1..416 | 2086 | 100 | Plus |
skap-PH | 451 | CG11963-PH | 35..426 | 20..412 | 962 | 50.8 | Plus |
skap-PG | 451 | CG11963-PG | 35..426 | 20..412 | 962 | 50.8 | Plus |
skap-PB | 502 | CG11963-PB | 35..426 | 20..412 | 962 | 50.8 | Plus |