Clone BO09269 Report

Search the DGRC for BO09269

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:92
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptSucb-RA
Protein status:BO09269.pep: validated full length
Sequenced Size:1282

Clone Sequence Records

BO09269.3prime Sequence

881 bp (837 high quality bases) assembled on 2006-01-18

> BO09269.3prime
ATGGTCTAGAAAGCTTGCATTAAGGGCTGCCACAGCCTTGTGGGCGGCAT
CATCCAAGTCACTGGCTGTCTGAATGGGCAGGCCCGAATTCTTCAGGATC
TCGCGAGCCTGATTTACATTGGTGCCCTCCAGTCGCACAACCAGTGGAAC
ATTCAGTTGCAGCTTTTTGGATGCAGCCACAATGCCATTGGCAATGGTGG
CACAATTGACAATGCCGCCAAAGACATTGACCAGGATTCCCTTGACTTTC
GGGTCAGCAGTGAGGATCTCGAAGGCTTTGGCCACCTGATCCTCCCTGAC
GCCACCGCCGACGTCCAAAAAGTTGGCGGGCTCGCCTCCATTCAGCTTGA
TGATGTCCATGGTGGCCATGGCCAGGCCGGCACCATTAACCAAGCAGCCA
ATGTTGCCATCCATGGCGACGTAGTTCAGATTGTACTTGGCCGCCTCCAC
TTCTCGGGGATCGGATTCCTCCTCGGTGACGTCCATGGAGAAAATATCCT
TCTGACGGAACTGGGCATTGTCGTCAAAGTTGAGCTTAGCATCAACGGAG
ATAACTTCTCCCTTATCCGTCTCCGCCAGCGGGTTGATCTCGATCTGTAC
GGCATCCACAGCTTTGAAGAGAGTATAGAGTTTTTGAATTTCCTCAGCAC
AACGCTTTACAGAGTCTCCCTTGAACTCCAAGAACTTGGCCACCTCCAAG
AGCGTCGACTCCGGTATGGGCTTGCCAATGTCTAGCGGAACAGTCTTAAT
TTTCTCAGGGGTTTCCTCGGCCACCGCCTCGATATCCATGCCACCGGCAG
GTGAGGCAATCAGCACGGGTCCATTGTGCTCGCGGTCCAGCAAGATGCAG
AGATAGGTCTCGCGGGTGATGTTGATACTGC

BO09269.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10622-PA 1251 Sucb-RA 386..1248 881..19 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 08:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 534..1396 881..19 4315 100 Minus
Sucb-RA 1600 CG10622-RA 534..1396 881..19 4315 100 Minus
skap-RH 1914 CG11963-RH 931..1082 453..302 355 82.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 08:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5561905..5562767 19..881 4315 100 Plus
3R 32079331 3R 8941506..8941657 453..302 355 82.2 Minus
Blast to na_te.dros performed on 2015-02-03 08:56:10 has no hits.

BO09269.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:16 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-PA 386..1251 18..881 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:28 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10622-PA 386..1251 18..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:52 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 534..1396 19..881 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:57:07 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 534..1396 19..881 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:57:07 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 5561905..5562767 19..881 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:52 Download gff for BO09269.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555005..5555867 19..881 100   Plus

BO09269.5prime Sequence

899 bp (780 high quality bases) assembled on 2006-01-17

> BO09269.5prime
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATG

BO09269.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG10622-PA 1251 Sucb-RA 1..883 17..899 4415 100 Plus
CG10622-PB 339 Sucb-RB 1..281 17..297 1405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 139..1031 7..899 4420 99.7 Plus
Sucb-RA 1600 CG10622-RA 139..1031 7..899 4420 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:08:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5562270..5562875 899..294 3015 99.8 Minus
3L 28110227 3L 5563266..5563397 197..66 660 100 Minus
3L 28110227 3L 5563085..5563185 297..197 505 100 Minus
3L 28110227 3L 5563490..5563553 70..7 275 95.3 Minus
Blast to na_te.dros performed on 2015-02-12 05:08:42 has no hits.

BO09269.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 04:06:17 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 03:08:29 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10622-PA 1..883 17..899 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:32 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 137..1031 3..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:23:29 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 137..1031 3..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:23:29 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 5562270..5562871 298..899 100 <- Minus
3L 5563085..5563184 198..297 100 <- Minus
3L 5563266..5563395 68..197 100 <- Minus
3L 5563493..5563555 3..67 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:32 Download gff for BO09269.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555370..5555971 298..899 100 <- Minus
arm_3L 5556185..5556284 198..297 100 <- Minus
arm_3L 5556366..5556495 68..197 100 <- Minus
arm_3L 5556593..5556655 3..67 92   Minus

BO09269.complete Sequence

1282 bp (1282 high quality bases) assembled on 2006-01-25

GenBank Submission: FJ631458

> BO09269.complete
GAAGTTATCAGTCGACATGTCGTTCCTACTGAAAGCAGTTACCACAGCCC
GTCACATCGTTCATAAGGTTCCCGTGCGCAACCTGAATCTGCTGGAGTTC
CAGAGCAAGGATCTCCTCCAGAAGTATGGAGTGGCCATACAGCAATTCAA
GGTCTTGAATAACTCCAAGGCAGATGCCGAGGTCGTCAAGACTTTTGAGT
GCCCGGAATACGTGGTGAAGGCGCAGATTCTCGCCGGTGGGCGTGGCAAG
GGAACTTTCGACAACGGATTCAAAGGCGGCGTCCATATCACCACCAACAA
GAGCGAGGTGCTTTCGCTTACCCAGCAGATGATTGGAAACCGACTGATAA
CGAAACAAACGCCCAAATCGGGAATTTTGGTCAACAAGGTCATGGTGGCA
CGCAGTATCAACATCACCCGCGAGACCTATCTCTGCATCTTGCTGGACCG
CGAGCACAATGGACCCGTGCTGATTGCCTCACCTGCCGGTGGCATGGATA
TCGAGGCGGTGGCCGAGGAAACCCCTGAGAAAATTAAGACTGTTCCGCTA
GACATTGGCAAGCCCATACCGGAGTCGACGCTCTTGGAGGTGGCCAAGTT
CTTGGAGTTCAAGGGAGACTCTGTAAAGCGTTGTGCTGAGGAAATTCAAA
AACTCTATACTCTCTTCAAAGCTGTGGATGCCGTACAGATCGAGATCAAC
CCGCTGGCGGAGACGGATAAGGGAGAAGTTATCTCCGTTGATGCTAAGCT
CAACTTTGACGACAATGCCCAGTTCCGTCAGAAGGATATTTTCTCCATGG
ACGTCACCGAGGAGGAATCCGATCCCCGAGAAGTGGAGGCGGCCAAGTAC
AATCTGAACTACGTCGCCATGGATGGCAACATTGGCTGCTTGGTTAATGG
TGCCGGCCTGGCCATGGCCACCATGGACATCATCAAGCTGAATGGAGGCG
AGCCCGCCAACTTTTTGGACGTCGGCGGTGGCGTCAGGGAGGATCAGGTG
GCCAAAGCCTTCGAGATCCTCACTGCTGACCCGAAAGTCAAGGGAATCCT
GGTCAATGTCTTTGGCGGCATTGTCAATTGTGCCACCATTGCCAATGGCA
TTGTGGCTGCATCCAAAAAGCTGCAACTGAATGTTCCACTGGTTGTGCGA
CTGGAGGGCACCAATGTAAATCAGGCTCGCGAGATCCTGAAGAATTCGGG
CCTGCCCATTCAGACAGCCAGTGACTTGGATGATGCCGCCCACAAGGCTG
TGGCAGCCCTTAATGCAAGCTTTCTAGACCAT

BO09269.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:04:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1251 CG10622-PC 1..1248 17..1264 6240 100 Plus
Sucb-RA 1251 CG10622-PA 1..1248 17..1264 6240 100 Plus
skap-RH 1356 CG11963-PH 856..1007 830..981 355 82.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-RC 1518 CG10622-RC 139..1396 7..1264 6245 99.8 Plus
Sucb-RA 1600 CG10622-RA 139..1396 7..1264 6245 99.8 Plus
skap-RH 1914 CG11963-RH 931..1082 830..981 355 82.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5561905..5562875 1264..294 4840 99.9 Minus
3L 28110227 3L 5563266..5563397 197..66 660 100 Minus
3L 28110227 3L 5563085..5563185 297..197 505 100 Minus
3R 32079331 3R 8941506..8941657 830..981 355 82.2 Plus
3L 28110227 3L 5563490..5563553 70..7 275 95.3 Minus
Blast to na_te.dros performed on 2014-11-27 16:04:24 has no hits.

BO09269.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:07:09 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 1..1251 17..1265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:27:01 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 130..1389 3..1264 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:41 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 149..1396 17..1266 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:07:09 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 130..1389 3..1264 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:44 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
Sucb-RA 149..1396 17..1266 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:44 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5563493..5563543 17..67 100   Minus
3L 5561903..5562871 298..1266 99 <- Minus
3L 5563085..5563184 198..297 100 <- Minus
3L 5563266..5563395 68..197 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:41 Download gff for BO09269.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5555003..5555971 298..1266 99 <- Minus
arm_3L 5556185..5556284 198..297 100 <- Minus
arm_3L 5556366..5556495 68..197 100 <- Minus
arm_3L 5556593..5556643 17..67 100   Minus

BO09269.pep Sequence

Translation from 16 to 1282

> BO09269.pep
MSFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNS
KADAEVVKTFECPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLS
LTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNGP
VLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKG
DSVKRCAEEIQKLYTLFKAVDAVQIEINPLAETDKGEVISVDAKLNFDDN
AQFRQKDIFSMDVTEEESDPREVEAAKYNLNYVAMDGNIGCLVNGAGLAM
ATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPKVKGILVNVFG
GIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQT
ASDLDDAAHKAVAALNASFLDH

BO09269.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:41:22
Subject Length Description Subject Range Query Range Score Percent Strand
Sucb-PC 416 CG10622-PC 1..416 1..416 2086 100 Plus
Sucb-PA 416 CG10622-PA 1..416 1..416 2086 100 Plus
skap-PH 451 CG11963-PH 35..426 20..412 962 50.8 Plus
skap-PG 451 CG11963-PG 35..426 20..412 962 50.8 Plus
skap-PB 502 CG11963-PB 35..426 20..412 962 50.8 Plus